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on page 1 showing 20 out of 95 results

Cite this (Academia.edu, RRID:SCR_000080)

URL: http://www.academia.edu/

Resource Type: Resource, portal, community building portal, data or information resource

Social networking site for academic researchers that allows researchers to share papers, find people working in a field and see analytics on papers etc

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Cite this (Acumen Consortium, RRID:SCR_006599)

URL: http://research-acumen.eu/

Resource Type: Resource, organization portal, portal, data or information resource

European research collaboration aimed at understanding the ways in which researchers are evaluated by their peers and by institutions, and at assessing how the science system can be improved and enhanced. This FP7 project is a cooperation among nine European research institutes with Professor Paul Wouters (CWTS ?????? Leiden University) as principal investigator.

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Cite this (Adobe FormsCentral, RRID:SCR_001729)

URL: https://www.acrobat.com/formscentral/en/

Resource Type: Resource, service resource, commercial organization

Service to create PDF and web forms.

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Cite this (Altmetric API, RRID:SCR_001736)

URL: http://www.altmetric.com/api.php

Resource Type: Resource, software resource, application programming interface, data access protocol

Application programming interface that gives one programmatic access to the article level metrics data associated with articles and datasets collected by Altmetric. It extracts, disambiguates and collates mentions of scholarly works online, allowing one to focus on one's core product.

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Cite this (Altmetric Badges, RRID:SCR_002558)

URL: http://www.altmetric.com/badges.php

Resource Type: Resource, commercial organization

A single line of code to add your article pages to include the Altmetric score and donut graphic on your own site with minimal technical effort. Choose from an array of different badge styles, including the colourful and iconic Altmetric donut. Implement article level metrics into your pages in minutes. Their pricing is based on the number of journals you want covered, with significant discounts for larger portfolios. You can try out the badges for free and without any commitment - however, your visitors will only see a subset of activity for each article when they click through. See the technical documentation for details.

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Cite this (A modular structure for scientific articles in an electronic environment, RRID:SCR_002451)

URL: http://www.science.uva.nl/projects/commphys/papers/thesisfh/Front.html

Resource Type: Resource, narrative resource, thesis, data or information resource

This thesis proposes a modular form for Physics papers: by investigating a collection of papers, a more fine-grained structure for science papers and an extensive relationships taxonomy is proposed. Examples of modular articles are included.

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Cite this (A.nnotate, RRID:SCR_002839)

URL: http://a.nnotate.com/

Resource Type: Resource, software resource, service resource, commercial organization, storage service resource

An online annotation, collaboration and indexing system for documents and images, supporting PDF and MS Office formats. Instead of emailing different versions of a document back and forth you can all comment on a single read-only copy online. Unlike online word processors, the document is displayed in high quality with fonts and layout just like the printed version. It is easy to use and runs in all common web browsers, with no software or plugins to install. Hosted solutions are available for individuals and workgroups. For enterprise users the full system is available for local installation. Special discounts apply for educational use. The FREE hosted solution offers single-user accounts for uploading up to 30 pages per month. Documents can be shared with any number of annotators.

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Cite this (Annotation Ontology, RRID:SCR_002862)

URL: http://code.google.com/p/annotation-ontology/

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

A vocabulary for performing several types of annotation - comment, entities annotation (or semantic tags), textual annotation (classic tags), notes, examples, erratum... - on any kind of electronic document (text, images, audio, tables...) and document parts. AO is not providing any domain ontology but it is fostering the reuse of the existing ones for not breaking the principle of scalability of the Semantic Web.

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Cite this (Argumentative Zoning: Information Extraction from Scientific Articles, RRID:SCR_006303)

URL: http://www.cl.cam.ac.uk/~sht25/az.html

Resource Type: Resource, narrative resource, thesis, data or information resource

Simone Teufel''s thesis introducing a rhetorical-level analysis of scientific research articles called Argumentative Zoning that aims to provide an intelligent library search tool for researchers. This could include the summarization of single or multiple articles, and also improved citation indexes. A construct called a citation maps could help people grasp relationships between papers. The definition of the argumentative Zones is given by the sentential-rhetorical speech act of single, important sentences (landmark sentences, e.g. in the paper they develop a method for or in contrast to REFERENCE, their approach uses ...). That means, she is particularly interested in the rhetorical status of that sentence with respect to the communicative function of the whole paper. The zones, each associated with one or more sentences, are the following: * BKG: General scientific background (yellow) * OTH: Neutral descriptions of other people''s work (orange) * OWN: Neutral descriptions of the own, new work (blue) * AIM: Statements of the particular aim of the current paper (pink) * TXT: Statements of textual organization of the current paper (in chapter 1, we introduce...) (red) * CTR: Contrastive or comparative statements about other work; explicit mention of weaknesses of other work (green) * BAS: Statements that own work is based on other work (purple) The thesis looks at how humans perform the analysis, how much they agree or disagree (they agree pretty much!) and how an automatic, rather shallow process can apply the analysis, based on machine learning and sentential features.

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Cite this (Bamboo DiRT, RRID:SCR_002556)

URL: http://dirt.projectbamboo.org/

Resource Type: Resource, data or information resource, database

Registry of digital research tools for scholarly use that makes it easy for digital humanists and others conducting digital research to find and compare resources ranging from content management systems to music OCR, statistical analysis packages to mindmapping software.

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Cite this (BioCreative, RRID:SCR_006311)

URL: http://biocreative.sourceforge.net/

Resource Type: Resource, topical portal, challenge, benchmark, data set, portal, data or information resource

Community-wide effort (Challenge) for evaluating text mining and information extraction systems applied to the biological domain. It is focused on the comparison of methods and the community assessment of scientific progress, rather than on the purely competitive aspects. There is a considerable difficulty in constructing suitable gold standard data for training and testing new information extraction systems which handle life science literature. Thus the data sets derived from the BioCreAtIvE challenge - because they have been examined by biological database curators and domain experts - serve as useful resources for the development of new applications as well as helping to improve existing ones. Two main issues are addressed at BioCreAtIvE, both concerned with the extraction of biologically relevant and useful information from the literature. The first one is concerned with the detection of biologically significant entities (names) such as gene and protein names and their association to existing database entries. The second one is concerned with the detection of entity-fact associations (e.g. protein - functional term associations ).

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Cite this (Bio-Formats, RRID:SCR_000450)

URL: https://www.openmicroscopy.org/site/products/bio-formats

Resource Type: Resource, data processing software, software library, software application, software resource, software toolkit, image processing software

A standalone Java library for reading microscopy image data files in any format and writing image data using standardized, open formats. It currently reads and converts more than 120 file formats to the OME-TIFF data standard. (Dec. 2013)

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Cite this (BioLexicon, RRID:SCR_000589)

URL: http://www.nactem.ac.uk/biolexicon/

Resource Type: Resource, data or information resource, database

A large-scale English terminological database that contains over 2.2.M lexical entries (3.3M semantic relations), terminological variants and rich linguistic information (subcategorization frames) which supports text mining systems. It is primarily intended to support text mining and information retrieval in the biomedical domain. The BioLexicon provides specific information to help determine the relevant facts to be extracted. BioLexicon is available in a relational database format (MySQL dump format) and it adheres to the EAGLES/ISO standards for lexical resources.

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Cite this (Brainspell, RRID:SCR_001639)

URL: http://brainspell.org/

Resource Type: Resource, crowdsourcing site, annotation tool

Crowdsourcing site for annotating neuroimaging literature. Brainspell also allows for search across the literature.

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    CERMINE

Cite this (CERMINE, RRID:SCR_008993)

URL: http://services.ceon.pl/cermine/index.html

Resource Type: Resource, data analysis service, software library, production service resource, analysis service resource, software application, service resource, software resource, software toolkit, text extraction software

Java library and a web service for extracting metadata and content from scientific articles in born-digital form. The system analyses the entire content of a PDF file containing a publication and attempts to extract information such as: the title of the article, journal information (title, etc.), bibliographic information (volume, issue, page numbers, etc.), authors and affiliations, keywords, abstract, bibliographic references and structured sections hierarchy.

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Cite this (Citation Style Language, RRID:SCR_003234)

URL: http://citationstyles.org/

Resource Type: Resource, narrative resource, interchange format, markup language, standard specification, data or information resource

An open XML-based language used to describe the formatting of citations and bibliographies. CSL has become the standard way to add citation support to software.

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    CiteAb

Cite this (CiteAb, RRID:SCR_009653)

URL: http://www.citeab.com/

Resource Type: Resource, data or information resource, database

Citation-ranked antibody search engine that provides a simple way to find antibodies that work. They use the number of citations as a transparent method to rank antibodies. Nobody can pay to be ranked higher. They are always looking for more commercial and academic antibodies to make CiteAb better. There is no charge to list.

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    CKAN

Cite this (CKAN, RRID:SCR_002622)

URL: http://ckan.org/

Resource Type: Resource, software resource, software application, data management software

A complete out-of-the-box data management software solution that makes data accessible by providing tools to streamline publishing, sharing, finding and using data. CKAN is aimed at data publishers (national and regional governments, companies and organizations) wanting to make their data open and available. It uses its internal model to store metadata about the different records, and presents it on a web interface that allows users to browse and search this metadata. It also offers a powerful API that allows third-party applications and services to be built around it. CKAN is built with Python on the backend and Javascript on the frontend, and uses the Pylons web framework and SQLAlchemy as its ORM. Its database engine is PostgreSQL and its search is powered by SOLR. It has a modular architecture that allows extensions to be developed to provide additional features such as harvesting or data upload. CKAN is currently used by governments and user groups worldwide to power both official and community data portals.

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Cite this (Code4Lib Journal WordPress Customizations, RRID:SCR_004798)

URL: http://wiki.code4lib.org/index.php/Code4Lib_Journal_WordPress_Customizations

Resource Type: Resource, software resource, software application, authoring tool

WordPress plugins for Anti-Spam, Metadata, Presentation, URLs, and Workflow from the Code4Lib community, a group of computer programmers and library technologists who largely work for and with libraries. Anti-Spam *Akimset - Filters out spam-link comments based on their content *reCAPTCHA - Requires users to copy a distorted word before they can comment Metadata *COinS Quicktags Button - In the non-WYSIWYG editor, can be used to build a basic COinS tag. This has been abandoned in favor of the generator at http://generator.ocoins.info/. *unAPI Server - Provides information about articles. Useful for Zotero users. Presentation *SyntaxHighlighter - Makes code pretty. *C4LJ Custom the_author()- Replaces the text returned by the_author() with the value of the author custom field. Necessary since articles are entered by their editors, but we want author information to appear on the articles and in the syndication feeds. URLs *C4LJ Remove Parents - A customization of http://wordpress.org/extend/plugins/remove-parents/. Prettifies category URLs so that issues appear at http://journal.code4lib.org/issues/issue1 instead of http://journal.code4lib.org/issues/issues/issue1. *FeedBurner FeedSmith - Redirects the main feed and the general comments feed to FeedBurner Workflow *Issue Manager - Enables one-click publishing of new issues, and prevents articles from being published until their associated issue is published. *Role Manager - Allows creation of custom roles and editing of roles' permissions. Used to create the Reviewer role, which can read Private articles, so that authors can see their articles before publication, and to prevent editors from publishing articles on accident.

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Cite this (Commons In A Box, RRID:SCR_002620)

URL: http://commonsinabox.org/

Resource Type: Resource, software resource, source code

A free, distributable, easy-to-install software package of customizable, WordPress-based commons spaces for communities. This software project aimed at turning the infrastructure that successfully powers the CUNY (City University of New York) Academic Commons takes the complexity out of creating a Commons site, helping organizations create a space where their members can discuss issues, collaborate on projects, and share their work. CBOX also provides: * Out-of-the-box functionality with an intuitive set-up that guides site administrators through each step of installation. * A powerful, responsive, highly customizable theme developed for community engagement, based on PressCrew's Infinity Theming Engine. * Responsive design for easy viewing on many devices, including tablets and smartphones. * Collaborative document creation and file sharing. * Reply-By-Email functionality for quick, on-the-go communication. * Compatibility with many other WordPress and BuddyPress themes and plug-ins. * Expansive wiki options. CBOX will be useful to any organization that is looking for a shared space in which to build an engaged community of users and developers. Download their code, peruse their documentation, check out their project demo website, and join their community to find others using CBOX.

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