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on page 1 showing 20 out of 2,554 results from 1 sources

    (at)Note

Cite this ((at)Note, RRID:SCR_005342)

URL: http://darwin.di.uminho.pt/anote2/wiki/index.php/Main_Page

Resource Type: Resource, software resource, software application, text-mining software

THIS RESOURCE IS NO LONGER AVAILABLE. Documented September 18, 2017

Text Mining platform that copes with major Information Retrieval and Information Extraction tasks and promotes multi-disciplinary research. It aims to provide support to three different usage roles: biologists, text miners and application developers. The workbench supports the retrieval, processing and annotation of documents as well as their analysis at different levels.

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Cite this (2100 Expert Software, RRID:SCR_014466)

URL: http://www.genomics.agilent.com/en/product.jsp?cid=AG-PT-106&tabId=AG-PR-1002&_requestid=815672

Resource Type: Resource, data analytics software, software application, software resource

A software for analyzing digital assay data. The software performs RNA quality control, comparison between multiple chips, smear analysis, and data export in multiple formats.

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    2DMAP

Cite this (2DMAP, RRID:SCR_009036)

URL: http://www.genlink.wustl.edu/software

Resource Type: Resource, software resource, software application

THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application for constructing 2-d crossover-based map.

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    2LD

Cite this (2LD, RRID:SCR_000826)

URL: https://github.com/gaow/genetic-analysis-software/blob/master/pages/2LD.md

Resource Type: Resource, software resource, software application

THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software program for calculating linkage disequilibrium (LD) measures between two polymorphic markers.

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    2SNP

Cite this (2SNP, RRID:SCR_009038)

URL: https://github.com/gaow/genetic-analysis-software/blob/master/pages/2SNP.md

Resource Type: Resource, software resource, software application

THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. An algorithm resource for scalable phasing method for trios and unrelated individuals.

  • From Current Category

    3D Brain

Cite this (3D Brain, RRID:SCR_013138)

URL: https://itunes.apple.com/be/app/3d-brain/id331399332?mt=8

Resource Type: Resource, software application, narrative resource, training material, software resource, mobile app, data or information resource

iPhone and iPad app that provides a good overview of the brain and its structures allowing you to rotate and zoom around 29 interactive structures with your touch screen. Discover how each brain region functions, what happens when it is injured, and how it is involved in mental illness. Each detailed structure comes with information on functions, disorders, brain damage, case studies, and links to modern research. Compatible with iPhone, iPod touch and iPad. Requires iOS 3.0 or later.

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Cite this (3D Interactive Chemical Shift Imaging, RRID:SCR_002581)

URL: https://www.nitrc.org/projects/threedicsi/

Resource Type: Resource, software resource, software application, data processing software

A user-friendly and comprehensive software program for multi-dimensional CSI data visualization, spectral processing, localization, quantification and multi-variate analysis.

  • From Current Category

Cite this (3DMeshMetric, RRID:SCR_000043)

URL: http://www.nitrc.org/projects/meshmetric3d/

Resource Type: Resource, data visualization software, software application, data processing software, software resource

A visualization tool based on the VTK library. Its main feature is to measure and display surface-to-surface distance between two triangle meshes using user-specified uniform sampling ( based on the source code of MeshValmet ). 3dMeshMetric also offers all the basic tools to visualize meshes such as color, opacity, smoothing, down sampling or type of representation.

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Cite this (3DSlicerLupusLesionModule, RRID:SCR_000853)

URL: http://www.nitrc.org/projects/lupuslesion/

Resource Type: Resource, software resource, software application, data processing software

Slicer3 module to provide a capability for performing white matter lesion classification and summary.

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Cite this (3D Slicer, RRID:SCR_005619)

URL: http://slicer.org/

Resource Type: Resource, data visualization software, software application, data processing software, image analysis software, software resource

A free, open source software package for visualization and image analysis including registration, segmentation, and quantification of medical image data. Slicer provides a graphical user interface to a powerful set of tools so they can be used by end-user clinicians and researchers alike. 3D Slicer is natively designed to be available on multiple platforms, including Windows, Linux and Mac Os X. Slicer is based on VTK (http://public.kitware.com/vtk) and has a modular architecture for easy addition of new functionality. It uses an XML-based file format called MRML - Medical Reality Markup Language which can be used as an interchange format among medical imaging applications. Slicer is primarily written in C++ and Tcl.

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    3ds Max

Cite this (3ds Max, RRID:SCR_014251)

URL: http://www.autodesk.com/store/3ds-max/what-s-new#

Resource Type: Resource, software resource, software application, authoring tool

3D modeling, animation, and rendering software which allows users to create custom tools and share design projects. 3ds Max contains various tools and templates for rendering and and editing, including tools for graph construction, project collaboration, and complex topography creation.

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    3dsvm

Cite this (3dsvm, RRID:SCR_014083)

URL: http://www.nitrc.org/projects/afni_3dsvm/

Resource Type: Resource, software resource, image analysis software, data processing software, software application

A command-line program and plugin for AFNI built around SVM-Light. It performs support vector machine (SVM) analysis on fMRI data and runs on Unix+X11+Motif systems, including SGI, Solaris, Linux, and Mac OS X.

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Cite this (3DViewnix, RRID:SCR_007351)

URL: http://mipgsun.mipg.upenn.edu/~Vnews/

Resource Type: Resource, software resource, software application, data processing software, d visualization software

Data-, machine-, and application- independent software system for the visualization and analysis of multidimensional images. This transportable, very inexpensive software system, has capabilities for visualizing, manipulating, and analyzing multidimensional, multimodality image information. It is designed to run on Unix machines under X-windows. It uses a data protocol that is a multidimensional generalization of the ACR-NEMA standards. We have tested it extensively on SGI and Sun workstations and PCs. Other recipients of 3DVIEWNIX have installed it on a variety of platforms including IBM RS6000s, HP700s, and Stardent, all from a single source code version. UNIQUE FEATURES OF 3DVIEWNIX * Transportable - based on UNIX, X-window, and C * Based on multidimensional generalization of ACR-NEMA standards of data representation * Application-independent * Image dimensionality independent * Can handle rigid, non-rigid, static, and dynamic objects and object assemblies * Can handle object information from multiple modalities and longitudinal acquisitions * Multitudes of visualization, manipulation, and analysis methods incorporated * Open software system distributed with source code

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Cite this (4D-PARSeR Pathological Anatomy Regression via Segmentation and Registration, RRID:SCR_002480)

URL: http://www.nitrc.org/projects/parser_4d/

Resource Type: Resource, segmentation software, image analysis software, data processing software, software application, software resource, registration software

A tool for analyzing 4D images with pathology. Originally developed for processing longitudinal images of patients with traumatic brain injury, the tool contains new image analysis algorithms that combine registration and segmentation in a coherent framework, accounting for extreme changes due to extensive tissue damage.

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    4Peaks

Cite this (4Peaks, RRID:SCR_000015)

URL: http://nucleobytes.com/index.php/4peaks

Resource Type: Resource, software resource, software application, commercial organization

Software application for viewing and editing sequence trace files.

  • From Current Category

Cite this (7500 Real-Time PCR Software, RRID:SCR_014596)

URL: https://www.thermofisher.com/us/en/home/technical-resources/software-downloads/applied-biosystems-7500-real-time-pcr-system.html

Resource Type: Resource, software resource, data acquisition software, data processing software, software application

A software used to control and operate the Applied Biosystems 7500 Real-Time PCR system.

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    AAL

Cite this (AAL, RRID:SCR_003550)

URL: http://www.gin.cnrs.fr/spip.php?article216

Resource Type: Resource, software resource, image analysis software, data processing software, software application

Software for automated anatomical labeling of activations in SPM (Statistical Parametric Mapping) using a macroscopic anatomical parcellation of the MNI MRI single-subject brain. The software was used for an automated anatomical parcellation of the spatially normalized single-subject high-resolution T1 volume provided by the Montreal Neurological Institute (MNI) (D. L. Collins et al., 1998, Trans. Med. Imag. 17, 463468, PubMed). Using this parcellation method, three procedures to perform the automated anatomical labeling of functional studies were proposed: (1) labeling of an extremum defined by a set of coordinates, (2) percentage of voxels belonging to each of the anatomical volumes of interest (AVOI) intersected by a sphere centered by a set of coordinates, and (3) percentage of voxels belonging to each of the AVOI intersected by an activated cluster. An interface with the Statistical Parametric Mapping package is provided as a freeware to researchers of the neuroimaging community.

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    ABACAS

Cite this (ABACAS, RRID:SCR_015852)

URL: http://abacas.sourceforge.net

Resource Type: Resource, software resource, software application

Software that contiguates (align, order, orientate), visualizes and designs primers to close gaps on shotgun assembled contigs based on a reference sequence. ABACAS finds alignment positions and identifies syntenies of assembled contigs against the reference, then generates a pseudomolecule taking overlapping contigs and gaps into account.

  • From Current Category

Cite this (ABC (Atlas Based Classification), RRID:SCR_005981)

URL: http://www.nitrc.org/projects/abc

Resource Type: Resource, software resource, image analysis software, workflow software, data processing software, software application

A comprehensive processing pipeline developed and used at University of North Carolina and University of Utah for brain MRIs. The processing pipeline includes image registration, filtering, segmentation and inhomogeneity correction. The tool is cross-platform and can be run within 3D Slicer or as a stand-alone program. The image segmentation algorithm is based on the EMS software developed by Koen van Leemput.

  • From Current Category

Cite this (ABCDE Format, RRID:SCR_002428)

URL: http://www.w3.org/wiki/images/5/51/HCLSIG$$SWANSIOC$$Actions$$RhetoricalStructure$$models$$abcde$abcde_example.htm

Resource Type: Resource, software resource, software application, text-mining software

Proposed format for papers to be machine-readable for computers and wikis. The goal is to make mining, integration, and consumption of published information by semantic browsers and wikis easier.

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