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on page 1 showing 20 out of 1,310 results from 1 sources

Cite this (3D Interactive Chemical Shift Imaging, RRID:SCR_002581)

URL: https://www.nitrc.org/projects/threedicsi/

Resource Type: Resource, software resource, software application, data processing software

A user-friendly and comprehensive software program for multi-dimensional CSI data visualization, spectral processing, localization, quantification and multi-variate analysis.

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Cite this (3DMeshMetric, RRID:SCR_000043)

URL: http://www.nitrc.org/projects/meshmetric3d/

Resource Type: Resource, data visualization software, software application, data processing software, software resource

A visualization tool based on the VTK library. Its main feature is to measure and display surface-to-surface distance between two triangle meshes using user-specified uniform sampling ( based on the source code of MeshValmet ). 3dMeshMetric also offers all the basic tools to visualize meshes such as color, opacity, smoothing, down sampling or type of representation.

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Cite this (3DSlicerLupusLesionModule, RRID:SCR_000853)

URL: http://www.nitrc.org/projects/lupuslesion/

Resource Type: Resource, software resource, software application, data processing software

Slicer3 module to provide a capability for performing white matter lesion classification and summary.

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Cite this (3D Slicer, RRID:SCR_005619)

URL: http://slicer.org/

Resource Type: Resource, data visualization software, software application, data processing software, image analysis software, software resource

A free, open source software package for visualization and image analysis including registration, segmentation, and quantification of medical image data. Slicer provides a graphical user interface to a powerful set of tools so they can be used by end-user clinicians and researchers alike. 3D Slicer is natively designed to be available on multiple platforms, including Windows, Linux and Mac Os X. Slicer is based on VTK (http://public.kitware.com/vtk) and has a modular architecture for easy addition of new functionality. It uses an XML-based file format called MRML - Medical Reality Markup Language which can be used as an interchange format among medical imaging applications. Slicer is primarily written in C++ and Tcl.

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    3dsvm

Cite this (3dsvm, RRID:SCR_014083)

URL: http://www.nitrc.org/projects/afni_3dsvm/

Resource Type: Resource, software resource, image analysis software, data processing software, software application

A command-line program and plugin for AFNI built around SVM-Light. It performs support vector machine (SVM) analysis on fMRI data and runs on Unix+X11+Motif systems, including SGI, Solaris, Linux, and Mac OS X.

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Cite this (3DViewnix, RRID:SCR_007351)

URL: http://mipgsun.mipg.upenn.edu/~Vnews/

Resource Type: Resource, software resource, software application, data processing software, d visualization software

Data-, machine-, and application- independent software system for the visualization and analysis of multidimensional images. This transportable, very inexpensive software system, has capabilities for visualizing, manipulating, and analyzing multidimensional, multimodality image information. It is designed to run on Unix machines under X-windows. It uses a data protocol that is a multidimensional generalization of the ACR-NEMA standards. We have tested it extensively on SGI and Sun workstations and PCs. Other recipients of 3DVIEWNIX have installed it on a variety of platforms including IBM RS6000s, HP700s, and Stardent, all from a single source code version. UNIQUE FEATURES OF 3DVIEWNIX * Transportable - based on UNIX, X-window, and C * Based on multidimensional generalization of ACR-NEMA standards of data representation * Application-independent * Image dimensionality independent * Can handle rigid, non-rigid, static, and dynamic objects and object assemblies * Can handle object information from multiple modalities and longitudinal acquisitions * Multitudes of visualization, manipulation, and analysis methods incorporated * Open software system distributed with source code

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Cite this (4D-PARSeR Pathological Anatomy Regression via Segmentation and Registration, RRID:SCR_002480)

URL: http://www.nitrc.org/projects/parser_4d/

Resource Type: Resource, segmentation software, image analysis software, data processing software, software application, software resource, registration software

A tool for analyzing 4D images with pathology. Originally developed for processing longitudinal images of patients with traumatic brain injury, the tool contains new image analysis algorithms that combine registration and segmentation in a coherent framework, accounting for extreme changes due to extensive tissue damage.

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Cite this (7500 Real-Time PCR Software, RRID:SCR_014596)

URL: https://www.thermofisher.com/us/en/home/technical-resources/software-downloads/applied-biosystems-7500-real-time-pcr-system.html

Resource Type: Resource, software resource, data acquisition software, data processing software, software application

A software used to control and operate the Applied Biosystems 7500 Real-Time PCR system.

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    AAL

Cite this (AAL, RRID:SCR_003550)

URL: http://www.gin.cnrs.fr/spip.php?article216

Resource Type: Resource, software resource, image analysis software, data processing software, software application

Software for automated anatomical labeling of activations in SPM (Statistical Parametric Mapping) using a macroscopic anatomical parcellation of the MNI MRI single-subject brain. The software was used for an automated anatomical parcellation of the spatially normalized single-subject high-resolution T1 volume provided by the Montreal Neurological Institute (MNI) (D. L. Collins et al., 1998, Trans. Med. Imag. 17, 463468, PubMed). Using this parcellation method, three procedures to perform the automated anatomical labeling of functional studies were proposed: (1) labeling of an extremum defined by a set of coordinates, (2) percentage of voxels belonging to each of the anatomical volumes of interest (AVOI) intersected by a sphere centered by a set of coordinates, and (3) percentage of voxels belonging to each of the AVOI intersected by an activated cluster. An interface with the Statistical Parametric Mapping package is provided as a freeware to researchers of the neuroimaging community.

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Cite this (ABC (Atlas Based Classification), RRID:SCR_005981)

URL: http://www.nitrc.org/projects/abc

Resource Type: Resource, software resource, image analysis software, workflow software, data processing software, software application

A comprehensive processing pipeline developed and used at University of North Carolina and University of Utah for brain MRIs. The processing pipeline includes image registration, filtering, segmentation and inhomogeneity correction. The tool is cross-platform and can be run within 3D Slicer or as a stand-alone program. The image segmentation algorithm is based on the EMS software developed by Koen van Leemput.

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    aBEAT

Cite this (aBEAT, RRID:SCR_002238)

URL: http://www.med.unc.edu/bric/ideagroup/free-softwares/abeat-a-toolbox-for-consistent-analysis-of-longitudinal-adult-brain-mri

Resource Type: Resource, image analysis software, data processing software, software application, software resource, software toolkit, image processing software

A 4D adult brain extraction and analysis toolbox with graphical user interfaces to consistently analyze 4D adult brain MR images. Single-time-point images can also be analyzed. Main functions of the software include image preprocessing, 4D brain extraction, 4D tissue segmentation, 4D brain labeling, ROI analysis. Linux operating system (64 bit) is required. A computer with 8G memory (or more) is recommended for processing many images simultaneously. The graphical user interfaces and overall framework of the software are implemented in MATLAB. The image processing functions are implemented with the combination of C/C++, MATLAB, Perl and Shell languages. Parallelization technologies are used in the software to speed up image processing.

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Cite this (ABSORB: Atlas Building by Self-Organized Registration and Bundling, RRID:SCR_007018)

URL: http://bric.unc.edu/ideagroup/free-softwares/ABSORB/

Resource Type: Resource, image analysis software, data processing software, source code, software application, software resource, registration software

This software package implements an algorithm for effective groupwise registration. The required input is a set of 3D MR intensity images (in Analyze format with paired .hdr and .img files) with a text file (.txt) listing all header file (.hdr) names. The output is the set of registered images together with the corresponding dense deformation fields. This software has been tested on Windows XP (32-bit) and Linux (64-bit, kernel version 2.6.18-194.el5). The images should be pre-processed before applying ABSORB: * All brain MR images used as inputs to ABSORB should be in the same situation (e.g., skull-stripped or not, cerebellum removed or not, etc.). * The input images should be in Analyze format with paired header and image files. This software was developed in IDEA group in UNC-Chapel Hill.

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Cite this (ACCESSPOINT, RRID:SCR_015792)

URL: http://freelandsystems.com/accesspoint-suite/accesspoint/

Resource Type: Resource, software resource, software application, image processing software, data processing software, software toolkit

Software for viewing and analyzing medical DICOM images. The software suite includes a viewer, a report generating feature, and a DICOM network connection.

  • From Current Category

Cite this (AcqKnowledge Software, RRID:SCR_014279)

URL: http://www.biopac.com/product/acqknowledge-software/

Resource Type: Resource, data analysis software, data processing software, software application, software resource, data acquisition software, simulation software

A software program that allows the user to perform data acquistion, stimulation and analyses. Users do not need to know the programming language or a new protocol view. AcqKnowledge Software is compatible with MP150 Research Systems, MP36R Research Systems, and MRI and fMRI Setups. A variety of offline and online analysis tools allows users to customize data recordings and targeted analyses. The software can perform automated analysis routines, output a range of stimulus paradigms, and allows users to record from multiple hardware devices simultaneously.

  • From Current Category

Cite this (Activ 2000, RRID:SCR_007352)

URL: http://www.fmritools.org/Activ2000/activ2000.htm

Resource Type: Resource, software resource, software application, data analysis software, data processing software

Data analysis software with the following main features: fMRI spatial and temporal pre-processing (gaussian filtering) with motion correction, time slicing and template co-registration ; fMRI multithreaded bloc processing with one or more conditions (up to 999), lateralization index, paradigm design (box-car style with HRF convolution), anatomic coregistration, multiplanar reconstructions, opengl 3D surfacic rendering. DPTools and Activ 2000 are now one single software: DPTools v 3.0 and above. All the features already included in DPTools are available for the fMRI processings (statistics, motion correction, time slicing, aso). DPTools 3.0 can read Siemens Mosaic and Philips REC/PAR files for diffusion / dynamic series, and can export files to SPM99 format. Features: * Images Conversion * Paradigm Creation * Images Pre-Processing * Images Processing * Statistics * Co-registration * 3D * Filming * Loading / Saving * Batch Script * PACS Integration * and more... Activ 2000 is freely downloadable (46 MB)

  • From Current Category

Cite this (AdapterRemoval, RRID:SCR_011834)

URL: https://github.com/MikkelSchubert/adapterremoval

Resource Type: Resource, software resource, data processing software, data analysis software, sequence analysis software, software application

Software program to remove residual adapter sequences from next generation sequencing reads.

  • From Current Category

Cite this (AdaptiveCrawler, RRID:SCR_000573)

URL: http://bsec.ornl.gov/AdaptiveCrawler.shtml

Resource Type: Resource, software resource, data acquisition software, data processing software, software application

A web crawler that can intelligently acquire social media content on the Internet to meet the specific online data source acquisition needs of cancer researchers.

  • From Current Category

    ADAPT

Cite this (ADAPT, RRID:SCR_006769)

URL: http://bmsr.usc.edu/software/adapt/

Resource Type: Resource, software resource, software application, simulation software, data processing software, data analysis software

Computational modeling platform developed for pharmacokinetic and pharmacodynamic applications. It is intended for basic and clinical research scientists and is designed to facilitate the discovery, exploration and application of the underlying pharmacokinetic and pharmacodynamic properties of drugs. Features in ADAPT 5
*Individual Analysis ** Estimation module (ID) includes weighted least squares, maximum likelihood (ML), generalized least squares (GLS), maximum a posterior Bayesian estimation (MAP) ** Simulation module (SIM) includes capabilities for single and multisubject simulations ** Sample schedule design module (SAMPLE) provides the ability to calculate D- and C-optimal designs * Population Analysis ** Parametric population PK/PD modeling using maximum likelihood estimation via the EM algorithm with sampling (MLEM), as introduced by Schumitzky (1995) and by Walker (1996), with extensions and enhancements by Bauer & Guzy (2004). ** Iterated two-stage (ITS) analysis as proposed by Prevost (1977) and Steimer, Mallet and colleagues (1984). ** Convenient standard two-stage (STS) and naive pooled data (NPD) modeling, each with WLS, ML, and MAP estimators. System Requirements * Operating System: Windows XP/Vista/7 * Other Software REQUIRED: Intel Visual Fortran 10.x XE2013

  • From Current Category

Cite this (Adobe Audition, RRID:SCR_015796)

URL: http://www.adobe.com/products/audition.html

Resource Type: Resource, data analysis software, data processing software, software application, software resource, software toolkit, authoring tool

Software for sound analysis, audio editing, and audio recording. It features multitrack, waveform, and spectral display for creating, mixing, editing, and restoring audio content for research or non-research purposes.

  • From Current Category

Cite this (Adobe Photoshop, RRID:SCR_014199)

URL: https://www.adobe.com/products/photoshop.html

Resource Type: Resource, software resource, software application, image processing software, data processing software, image analysis software

Software for image processing, analysis, and editing. The software includes features such as touch capabilities, a customizable toolbar, 2D and 3D image merging, and Cloud access and options.

  • From Current Category

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