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on page 1 showing 20 out of 369 results from 1 sources

Cite this (2100 Expert Software, RRID:SCR_014466)

URL: http://www.genomics.agilent.com/en/product.jsp?cid=AG-PT-106&tabId=AG-PR-1002&_requestid=815672

Resource Type: Resource, data analytics software, software application, software resource

A software for analyzing digital assay data. The software performs RNA quality control, comparison between multiple chips, smear analysis, and data export in multiple formats.

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Cite this (ACCESSPOINT, RRID:SCR_015792)

URL: http://freelandsystems.com/accesspoint-suite/accesspoint/

Resource Type: Resource, software resource, software application, image processing software, data processing software, software toolkit

Software for viewing and analyzing medical DICOM images. The software suite includes a viewer, a report generating feature, and a DICOM network connection.

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Cite this (AFQ: Automated Fiber Quatification, RRID:SCR_014546)

URL: https://github.com/jyeatman/AFQ

Resource Type: Resource, data analytics software, software application, software resource

A framework for generating Tract Profiles of tissue properties for major fiber tracts in healthy and diseased brains. Online documentation can be found at: https://github.com/yeatmanlab/AFQ/wiki. AFQ has been tested for MATLAB r2009b through MATLAB r2014b. It requires functions from the MATLAB stats toolbox, vistasoft and SPM.

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Cite this (Agilent ChemStation Software, RRID:SCR_015742)

URL: https://www.agilent.com/cs/library/usermanuals/Public/G2070-91126_Understanding.pdf

Resource Type: Resource, software resource, software application, data analysis software, data processing software, data acquisition software

THIS RESOURCE HAS BEEN DISCONTINUED. Documented October 3, 2017.

Operational software created by Agilent Technologies to operate with its ChemStation hardware. The software can manage all parameters for instrument control, data acquisition
and evaluation, including integration, quantification and reporting.

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Cite this (Agilent Feature Extraction Software, RRID:SCR_014963)

URL: http://www.genomics.agilent.com/en/Microarray-Scanner-Processing-Hardware/Feature-Extraction-Software/?cid=AG-PT-144&tabId=AG-PR-1050

Resource Type: Resource, software resource, image analysis software, data processing software, software application

Software that automatically reads and processes up to 100 raw microarray image files. The software finds and places microarray grids, rejects outlier pixels, accurately determines feature intensities and ratios, flags outlier pixels, and calculates statistical confidences.

  • From Current Category

Cite this (Agilent Masshunter Quantitative Analysis software, RRID:SCR_015040)

URL: http://www.agilent.com/en-us/products/software-informatics/masshunter-suite/masshunter/masshunter-software

Resource Type: Resource, software resource, software application, data analysis software, data processing software

Software for the analysis of mass spectrometry data. MassHunter also works with software-specific packages to do more specialized analysis tasks.

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    AIMLESS

Cite this (AIMLESS, RRID:SCR_015747)

URL: http://www.ccp4.ac.uk/html/aimless.html

Resource Type: Resource, software resource, software application, data processing software

Data processing software for x-ray diffraction data. AIMLESS scales together multiple observations of reflections, and merges multiple observations into an average intensity.

  • From Current Category

    AlleleID

Cite this (AlleleID, RRID:SCR_014790)

URL: http://www.premierbiosoft.com/bacterial-identification/index.html

Resource Type: Resource, software resource, software application

Desktop software application for bacterial identification, pathogen detection, or species identification. It can be used for cross-species identification for microarrays and real time PCR primers. It uses ClustalW to align sequences then analyzes conserved and species specific regions within those sequences.

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Cite this (Allen Cell Types Database, RRID:SCR_014806)

URL: http://celltypes.brain-map.org

Resource Type: Resource, data or information resource, database

Database of neuronal cell types based on multimodal characterization of single cells to enable data-driven approaches to classification. It includes data such as electrophysiology recordings, imaging data, morphological reconstructions, and RNA and DNA sequencing data.

  • From Current Category

Cite this (Allen Cell Types Database, RRID:SCR_015719)

URL: http://celltypes.brain-map.org/

Resource Type: Resource, data or information resource, database

Database of neuronal cell types based on multimodal characterization of single cells to enable data-driven approaches to classification.

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    AmplifX

Cite this (AmplifX, RRID:SCR_014465)

URL: http://crn2m.univ-mrs.fr/pub/recherche/equipe-t-brue/jullien-nicolas/programmation/amplifx/?lang=fr

Resource Type: Resource, software resource, software application, data analysis software, data processing software

A software for managing, testing, and drawing primers. The software can locate primers for target sequences, calculate the quality score, predict amplified fragments and dimers, and create graphic representations of the primers.

  • From Current Category

Cite this (Analysis and Annotation Tool (AAT) Package, RRID:SCR_014658)

URL: http://aatpackage.sourceforge.net/

Resource Type: Resource, software resource, software application, data analysis software, data processing software

Genome tool for analyzing and annotating large genomic sequences containing introns. It includes a program for comparing the query sequence with a protein database and another for comparing the query with a cDNA database. The database search program identifies regions of the query sequence that are similar to a database sequence. Then the alignment program constructs an optimal alignment for each region and the database sequence, as well as reports the coordinates of exons in the query sequence. Pairwise alignments of the query sequence with protein and cDNA database sequences are combined into multiple sequence alignments, which provide a view of all protein and cDNA sequences matching a query region.

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Cite this ( AnaMorph, RRID:SCR_015012)

URL: https://github.com/NeuroBox3D/AnaMorph

Resource Type: Resource, software resource, source code

Framework for creating 3D neuronal morphologies from point/diameter descriptions.

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    Andor iQ

Cite this (Andor iQ, RRID:SCR_014461)

URL: http://www.andor.com/scientific-software/iq-live-cell-imaging-software

Resource Type: Resource, software resource, image analysis software, image processing software, data processing software, software application

A live cell imaging software that allows for control of iXon EMCCD and sCMOS cameras in synchronized combination with a number of additional imaging hardware devices. iQ can be used to run experiments to investigate dynamic processes in both single cells and multicellular systems, image fixed samples, and generate 3 dimensional image volumes for analysis.

  • From Current Category

Cite this (AnimalTracker, RRID:SCR_014397)

URL: http://animaltracker.elte.hu/

Resource Type: Resource, software resource, software application, data analysis software, data processing software

A universal tracking application specifically designed to support animal behavioral analysis. AnimalTracker consists of three main modules which can be used independently: Tracker is responsible for image processing and providing the coordinates of the identified object; Zone Designer provides tools to create custom-made investigation areas in order to design a maze-setup; and Tracking Analyzer module serves to define and obtain the parameters needed for the evaluation.

  • From Current Category

    Antha

Cite this (Antha, RRID:SCR_015761)

URL: https://synbiobeta.com/antha-code-experiments-biology/

Resource Type: Resource, software resource

Software language for methods to simplify protocols into reusable components that can be exchanged or removed to produce simple, reproducible, and scalable workflows. It allows users to develop, execute, and analyse biological experiments faster, while also introducing standardization and modularity to bioengineering.

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    AQUARIUM

Cite this (AQUARIUM, RRID:SCR_015760)

URL: http://klavinslab.org/aquarium.html

Resource Type: Resource, software resource, project portal, data or information resource, portal, programming language

Workflow software and methods language to improve the reproducibility of research results in the scientific community. The Aquarium Project aims to provide the means to specify, as precisely as possible, how to obtain a result using a combination of formal statements, informal descriptions, and photographs.

  • From Current Category

    ASHLAR

Cite this (ASHLAR, RRID:SCR_016266)

URL: https://github.com/sorgerlab/ashlar

Resource Type: Resource, software resource, software application, image processing software, data processing software

Software for image processing of cyclic immunofluorescence data. It performs alignment by simultaneous harmonization of layer/adjacency registration.

  • From Current Category

    AspireDB

Cite this (AspireDB, RRID:SCR_016272)

URL: http://aspiredb.msl.ubc.ca/

Resource Type: Resource, software resource, software application, data analysis software, data processing software, web application

Web-based software for analyzing genomic variants (CNVs, SNVs, and Indels) and phenotypes. It aims to represent the relationships between discovered variants and phenotypes.

  • From Current Category

Cite this (Assessment and Accreditation of Laboratory Animal Care International, RRID:SCR_015496)

URL: https://www.aaalac.org/

Resource Type: Organization

Private, nonprofit organization that promotes the humane treatment of animals in science through voluntary accreditation and assessment programs.

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