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on page 1 showing 20 out of 25 results from 1 sources

    APERTURE

Cite this (APERTURE, RRID:SCR_014082)

URL: http://www.nitrc.org/projects/aperture/

Resource Type: Resource, workflow software, data processing software, software application, data analysis software, software resource, software toolkit

A MATLAB-based toolbox for analysis of EEG, MEG, and ECoG data. APERTURE allows flexible multivariate analysis of ERPs and oscillatory activity and supports mass-univariate analysis with advanced statistical tests. Computations are accelerated using parallel computing supported through the MATLAB distributed computing toolbox. Examination of large, high-dimensional datasets is made simple through data visualization tools, including advanced plotting routines and generation of PDF reports with many figures.

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    BABAM

Cite this (BABAM, RRID:SCR_015632)

URL: https://github.com/kristinbranson/BABAM

Resource Type: Resource, software resource, data visualization software, data analysis resource, data processing software, software application

Graphical user interface for exploring hypotheses of correlations between neural activity in regions of the brain and behavior for Drosophila melanogaster. These correlation hypotheses are the result of our thermogenetic neural activation screen from the Janelia GAL4 collection.

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    CHIPS

Cite this (CHIPS, RRID:SCR_015741)

URL: https://github.com/EIN-lab/CHIPS

Resource Type: Resource, software resource, software application, image processing software, data processing software

Image processing software designed to analyse functional images of cells and blood vessels, primarily from two-photon microscopy. CHIPS is a set of classes and functions for MATLAB that integrates a number of algorithms, both novel and existing, into a complete image processing pipeline.

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Cite this (Efficient Permutation Testing, RRID:SCR_014104)

URL: http://www.nitrc.org/projects/efficient_pt

Resource Type: Resource, software resource, source code

A Matlab implementation for efficient permutation testing by using matrix completion.

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Cite this (FMAToolbox, RRID:SCR_015533)

URL: http://fmatoolbox.sourceforge.net

Resource Type: Resource, software resource, software application, data analysis software, data processing software

Matlab toolbox used to help analyze electrophysiological and behavioral data recorded from freely moving animals.

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Cite this (GazeReader, RRID:SCR_014112)

URL: http://www.nitrc.org/projects/gazereader/

Resource Type: Resource, software resource, software toolkit, software application, data processing software, data acquisition software

A toolbox for a point-process derived GLM analysis of eye tracking data in Matlab. Data loading, model specification, fitting and review are organized into a sequence of events, each of which is handled by a separate module in the toolbox. The graphical interface was created using the Matlab graphical user interface development environment.

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Cite this (GIMME (Group Iterative Multiple Model Estimation), RRID:SCR_014115)

URL: http://www.nitrc.org/projects/gimme/

Resource Type: Resource, software resource, software toolkit, data analysis software, data processing software, software application

A free Matlab toolbox for directed functional connectivity analysis of the fMRI BOLD signal from predefined regions of interest. It recovers the true structure of connections and estimates the weights attributed to each connection. GIMME obtains patterns at both the group and individual levels.

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Cite this (GraphVar: A toolbox for comprehensive graph analyses of functional brain connectivity, RRID:SCR_014117)

URL: http://www.nitrc.org/projects/graphvar/

Resource Type: Resource, software resource, software toolkit, data analysis software, data processing software, software application

A user-friendly graphical-user-interface (GUI)-based toolbox (MATLAB) for comprehensive graph-theoretical analyses of brain connectivity, including network construction and characterization, statistical analysis on network topological measures, and interactive exploration of results.

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Cite this (GrowthToolbox, RRID:SCR_015754)

URL: https://sourceforge.net/projects/gftbox/

Resource Type: Resource, software resource, software application, simulation software, data processing software, data analysis software

Analysis software for analysis of finite elements and simulations of 3D shape changes in a tissue that result from patterns of growth. It works with Matlab to model biological growth of leaves, petals, and similar organs.

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Cite this (MicrobeTracker, RRID:SCR_015939)

URL: http://microbetracker.org/

Resource Type: Resource, software resource, image analysis software, software toolkit, data processing software, software application

Software for bacterial microscopy image analysis. It is designed to detect and outline bacterial cells in microscopy images and to analyze fluorescence signal inside them.

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Cite this (Mixed Effect Model of Genetic-Set and Environment Interaction, RRID:SCR_015514)

URL: http://www.nitrc.org/projects/mixge/

Resource Type: Resource, software resource, software toolkit, model, data or information resource

MATLAB Toolbox which provides a mixed effect model for gene-environment interaction (MixGE) on neuroimaging phenotypes, such as structural volumes and tensor-based morphometry (TBM). This model incorporates both fixed and random effects of genetic-set and environment interaction in order to investigate homogeneous and heterogeneous contributions of sets of genetic variants and their interactions with environmental risks to phenotypes.

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    MRIcroS

Cite this (MRIcroS, RRID:SCR_014142)

URL: http://www.nitrc.org/projects/mricros

Resource Type: Resource, data visualization software, software application, data analysis software, data processing software, software resource

A Matlab-based tool for computational neuroscience-based analysis and data visualization. Its features include: surface mesh visualization in PLY, PIAL, NV, STL,VTK, and GIFTI formats; conversion of NIfTI voxel images to surface meshes and saving as PLY or VTK; track (TRK files) visualization; connectome data (BrainNet Viewer .node and .edge files) visualization; intuitive GUI; that availability of all functions available in the GUI through scripting (automated scripts can be created); and exporting of rendered image as bitmap.

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    NeuroElf

Cite this (NeuroElf, RRID:SCR_014147)

URL: http://www.nitrc.org/projects/bvqxtools

Resource Type: Resource, software resource, software toolkit, workflow software, data processing software, software application

A Matlab-based toolbox initially created for reading, writing, and processing of BrainVoyager (QX) files in Matlab.

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    NiiStat

Cite this (NiiStat, RRID:SCR_014152)

URL: http://www.nitrc.org/projects/niistat/

Resource Type: Resource, software resource, source code, data analysis software, data processing software, software application

A set of Matlab scripts for analyzing neuroimaging data from clinical populations. The NiiStat tools are designed to correlate behavioral data (task performance) with brain imaging data.

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Cite this (Orientation Distribution Function in Constant Solid Angle (CSA-ODF), RRID:SCR_014158)

URL: http://www.nitrc.org/projects/csa-odf

Resource Type: Resource, software resource, software toolkit, data visualization software, data processing software, software application

A Matlab toolbox that computes the Q-Ball Imaging Orientation Distribution Function in Constant Solid Angle (CSA-ODF) for diffusion-weighted MRI.

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Cite this (PreSurgMapp, RRID:SCR_014427)

URL: https://github.com/missy139/PreSurgMapp

Resource Type: Resource, software resource, software toolkit

A MATLAB toolbox for processing the functional areas of the brain using multi-modal fMRI data for pre-surgical mapping.
It is composed of three types of individual-level ICA analyses for user use. Traditional ICA (task) can be used for task fMRI. Either Traditional ICA (rest) or ICA with DICI (rest) can be used for rs-fMRI. Traditional ICA (rest) is designed for users who already have a hypothesis of the pattern of the target component and want to have manually set components by themselves. ICA with DICI (rest) is completely automatic, given that the user provides a template (provided). The software utilizes an automatic component identification method that is based on the discriminatory-index. All the components from multiple ICA runs with multiple component settings are ranked and compiled.

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Cite this (RNAcompete, RRID:SCR_015900)

URL: https://omictools.com/rnacompete-tool

Resource Type: Resource, software resource, software application, data analysis software, data processing software

Method for the systematic analysis of RNA binding specificities that uses a single binding reaction to determine the relative preferences of RBPs for short RNAs that contain a complete range of k-mers in structured and unstructured RNA contexts. RNAcompete identifies expected and previously unknown RNA binding preferences.

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Cite this (SimTracker, RRID:SCR_014735)

URL: http://mariannebezaire.com/simtracker/

Resource Type: Resource, software resource, software application, standalone software

MATLAB-based tool for use with NEURON network models. It supports the modeler with model design, organization, execution (including on supercomputers), analysis, and reproducibility.

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Cite this (Soma-Segmentation, RRID:SCR_015649)

URL: https://github.com/keepersecond/Soma-Segmentation

Resource Type: Resource, software resource, source code, algorithm resource

Source code for a soma segmentation method suitable for datasets with touching soma distributions. The method contains three main parts: soma detection based on DT and local maximum searching and refining; an improved Rayburst sampling algorithm for isolated and touching soma surface detection; and ellipsoid fitting to generate the segmentation results.

  • From Current Category

Cite this (Sound Analysis Pro, RRID:SCR_016003)

URL: http://soundanalysispro.com/

Resource Type: Resource, software resource, software application, data analysis software, data processing software

Software for birdsong analysis that performs automated recording and analysis of animal vocalization. It can record, analyze and manage sound data over prolonged periods.

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