Searching across hundreds of databases

Our searching services are busy right now. Your search will reload in five seconds.

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes
on page 1 showing 20 out of 50 results from 1 sources

Cite this (499 fROI atlas, RRID:SCR_014756)

URL: http://findlab.stanford.edu/functional_ROIs.html

Resource Type: Resource, atlas, data or information resource

Atlas of functional ROIs (fROIs) containing 499 regions, with extensive gray matter coverage. Atlases are available for download directly from the website.

  • From Current Category

Cite this (90 fROI atlas, RRID:SCR_014757)

URL: http://findlab.stanford.edu/functional_ROIs.html

Resource Type: Resource, atlas, data or information resource

Atlas of functional ROI's, including individual networks (auditory network, sensorimotor network, etc.). Atlases of individual networks and combined networks are available for download directly from the website.

  • From Current Category

Cite this (Atomify LAMMPS, RRID:SCR_015240)

URL: https://play.google.com/store/apps/details?id=com.compphys.atomify&hl=no

Resource Type: Resource, software resource, software application, simulation software, mobile app

Mobile simulation app for visualizing molecular interactions in liquids, solids and gases. The simulations are performed with the molecular dynamics code LAMMPS.

  • From Current Category

Cite this (BCBtoolkit, RRID:SCR_015519)

URL: http://toolkit.bcblab.com/

Resource Type: Resource, software resource, software toolkit, data analysis software, data processing software, software application

Software toolkit that provides several multi-modal tools to assess brain disconnections and remote effects of lesions. All modules are designed to process brain lesion data with a normalization algorithm, a module to estimate the probability and the severity of white matter disconnections, and a tool to build a map of the disconnected areas.

  • From Current Category

Cite this (BluePyOpt, RRID:SCR_014753)

URL: https://github.com/BlueBrain/BluePyOpt

Resource Type: Resource, software resource, software application, simulation software

An extensible framework for data-driven model parameter optimization that wraps and standardizes several existing open-source tools. BluePyOpt abstracts the optimization and evaluation tasks into various reusable and flexible discrete elements according to established best-practices. It also provides methods for setting up both small- and large-scale optimizations on a variety of platforms.

  • From Current Category

Cite this (Bodybuilder, RRID:SCR_015002)

URL: https://www.vicon.com/downloads/software/bodybuilder

Resource Type: Resource, software resource, software application, simulation software

Software package for modeling body biomechanics for use with the Vicon motion capture system. Bodybuilder allows users to, among other things, edit and modify trajectories and interpolate broken trajectories, model body segments and joints, create kinematic and kinetic models, and output results to text or file.

  • From Current Category

    BrainBox

Cite this (BrainBox, RRID:SCR_014750)

URL: http://brainbox.pasteur.fr/

Resource Type: Resource, data processing software, software application, web application, data visualization software, collaboration tool, software resource

Web application which allows users to visualise and collaboratively segment and annotate any brain MRI dataset available online via URL. A list of brains are available for use on the main site. Segmentations are automatically saved and can be downloaded as Nifti files or triangular meshes. Users can point BrainBox to their own Nifti data, or try data catalogues created by the community.

  • From Current Category

    Braineac

Cite this (Braineac, RRID:SCR_015888)

URL: http://caprica.genetics.kcl.ac.uk/BRAINEAC/

Resource Type: Resource, software resource, web application, data or information resource, database

Database for the UK Brain Expression Consortium (UKBEC) dataset that comprises of brains from individuals free of neurodegenerative disorders. The aim of Braineac is to release to the scientific community a valid instrument to investigate the genes and SNPs associated with neurological disorders.

  • From Current Category

Cite this (Brain Networks Toolbox, RRID:SCR_014788)

URL: https://github.com/srkesler/bnets

Resource Type: Resource, software resource, source code, software repository

Software repository containing code for measuring brain networks from structural and functional MRI data. Several programs require MATLAB to run.

  • From Current Category

Cite this (Challenge Competitions Collection, RRID:SCR_015650)

URL: http://www.nitrc.org/projects/challenges/

Resource Type: Resource, project portal, organization portal, portal, data or information resource

Portal for platforms available to conduct and compete in challenges aiming to improve scientific progress. Challenges allow researchers to share their research and problems with other subject matter experts for collaborative progress.

  • From Current Category

Cite this (Digimizer, RRID:SCR_014783)

URL: https://www.digimizer.com/

Resource Type: Resource, software resource, image analysis software, data processing software, software application

Image analysis software package that allows precise manual measurements and automatic object detection with measurements of object characteristics. Pictures may be X-rays, micrographs, and the like. Supported file formats include JPG, GIF, TIFF, BMP, PNG, WMF, EMF and DICOM files. Image rotation and light can be edited.

  • From Current Category

Cite this (ENIGMA-DTI Pipeline, RRID:SCR_014649)

URL: http://enigma.ini.usc.edu/protocols/dti-protocols/

Resource Type: Resource, protocol

Pipeline which provides tools to extract whole-brain average and regional measurements from DTI images including FA, AD, RD and MD. Protocols for preprocessing, ENIGMA-DTI processing (skeletonization and ROI extraction), and GWAS analysis are available. Software tools used for each process are listed within the protocols.

  • From Current Category

Cite this (Epilepsy T1 and Hippocampal Segmentation Datasets, RRID:SCR_014926)

URL: http://www.nitrc.org/projects/hfh_t1_hp_seg1/

Resource Type: Resource, data set, data or information resource

Shared dataset which consists of skull-stripped T1 MRI images and segmented hippocampi of 163 Temporal Lobe Epilepsy (TLE) patients. The T1 and hippocampal segmentation data of TLE patients are uploaded in three separate datasets which can be accessed from the main site.

  • From Current Category

Cite this (Functional Network Connectivity (FNC), RRID:SCR_015731)

URL: http://mialab.mrn.org/software/fnc/index.html

Resource Type: Resource, software resource, software toolkit, data analysis software, data processing software, software application

MATLAB software toolbox which finds and displays temporal relations amongst components. This can help determine causal relations in the brain.

  • From Current Category

Cite this (GingerALE, RRID:SCR_014921)

URL: http://brainmap.org/software.html#GingerALE

Resource Type: Resource, software resource, software application, algorithm resource, data processing software, data analysis software

Software available from brainmap.org to perform meta-analyses via the activation likelihood estimation (ALE) method. It also includes the transforms for icbm2tal conversions.

  • From Current Category

Cite this (Group Sparse Canonical Correlation Analysis, RRID:SCR_014977)

URL: http://www.nitrc.org/projects/gscca_2013/

Resource Type: Resource, software resource, software application, data analysis software, data processing software

Group Sparse Canonical Correlation Analysis is a method designed to study the mutual relationship between two different types of data.

  • From Current Category

    ICASSO

Cite this (ICASSO, RRID:SCR_014981)

URL: http://research.ics.aalto.fi/ica/icasso/

Resource Type: Resource, data visualization software, software application, algorithm resource, data processing software, software resource

Software implementing a method for assessing both the algorithmic and statistical reliability of estimated independent components developed by Himburg et al in their 2004 paper. The method is based on running the ICA algorithm many times with slightly different conditions and visualizing the clustering structure of the obtained components in the signal space. In experiments with magnetoencephalographic (MEG) and functional magnetic resonance imaging (fMRI) data, the method was able to show that expected components are reliable; furthermore, it pointed out components whose interpretation was not obvious but whose reliability should incite the experimenter to investigate the underlying technical or physical phenomena.

  • From Current Category

Cite this (ICN_Atlas, RRID:SCR_015890)

URL: http://www.nitrc.org/projects/icn_atlas/

Resource Type: Resource, software resource, software toolkit

Software toolbox for SPM that is aimed at facilitating the interpretation of fMRI data in the context of intrinsic connectivity networks (ICNs) by describing fMRI maps in function-oriented, objective and quantitative way using a set of 15 metrics conceived to quantify the degree of ‘engagement’ of ICNs for any given statistical map of interest. Besides the functionally-derived atlasing capabilities (based on the BrainMap ICN data) the toolbox provides anatomy-based atlasing (based on the JHU and Brainnetome Atlas data), as well.

  • From Current Category

    Ilastik

Cite this (Ilastik, RRID:SCR_015246)

URL: http://ilastik.org/

Resource Type: Resource, segmentation software, image analysis software, data processing software, software application, software resource, image processing software

Tool for interactive image classification, segmentation and analysis, built as a modular software framework, which currently has workflows for automated (supervised) pixel- and object-level classification, automated and semi-automated object tracking, semi-automated segmentation and object counting without detection.

  • From Current Category

Cite this (KnowledgeSpace, RRID:SCR_014539)

URL: http://knowledge-space.org/

Resource Type: Resource, data or information resource, portal, knowledge environment resource

A community encyclopaedia that links brain research concepts with data, models and literature from around the world. It is an open project where users can participate and contribute to the global research community.

  • From Current Category

  1. Resource Identification Portal Resources

    Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Save Your Search

    You can save any searches you perform for quick access to later from here.

  6. Query Expansion

    We recognized your search term and included synonyms and inferred terms along side your term to help get the data you are looking for.

  7. Collections

    If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  8. Sources

    Here are the sources that were queried against in your search that you can investigate further.

  9. Categories

    Here are the categories present within RRID that you can filter your data on

  10. Subcategories

    Here are the subcategories present within this category that you can filter your data on

  11. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.

X