Searching across hundreds of databases

Our searching services are busy right now. Your search will reload in five seconds.

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

Search

Type in a keyword to search

on page 1 showing 20 out of 2,487 results

    (at)Note

Cite this ((at)Note, RRID:SCR_005342)

URL: http://darwin.di.uminho.pt/anote2/wiki/index.php/Main_Page

Resource Type: Resource, software resource, software application, text-mining software

THIS RESOURCE IS NO LONGER AVAILABLE. Documented September 18, 2017. Text Mining platform that copes with major Information Retrieval and Information Extraction tasks and promotes multi-disciplinary research. It aims to provide support to three different usage roles: biologists, text miners and application developers. The workbench supports the retrieval, processing and annotation of documents as well as their analysis at different levels.

  • From Current Category

    4Peaks

Cite this (4Peaks, RRID:SCR_000015)

URL: http://nucleobytes.com/index.php/4peaks

Resource Type: Resource, software resource, software application

Software application for viewing and editing sequence trace files.

  • From Current Category

    A5-miseq

Cite this (A5-miseq, RRID:SCR_012148)

URL: http://sourceforge.net/projects/ngopt/

Resource Type: Resource, software resource

Software that produces high quality microbial genome assemblies on a laptop computer without any parameter tuning. A5-miseq does this by automating the process of adapter trimming, quality filtering, error correction, contig and scaffold generation, and detection of misassemblies. Unlike the original A5 pipeline, A5-miseq can use long reads from the Illumina MiSeq, use read pairing information during contig generation, and includes several improvements to read trimming.

  • From Current Category

    A5

Cite this (A5, RRID:SCR_013068)

URL: http://code.google.com/p/ngopt/wiki/A5PipelineREADME

Resource Type: Resource, software resource

A pipeline for assembling DNA sequence data generated on the Illumina sequencing platform.

  • From Current Category

    AACC

Cite this (AACC, RRID:SCR_011999)

URL: http://www.aacc.org/Pages/default.aspx

Resource Type: Resource, portal, community building portal, data or information resource

An international society comprised of medical professionals with an interest in clinical chemistry, clinical laboratory science, and laboratory medicine.

  • From Current Category

    ABACUS

Cite this (ABACUS, RRID:SCR_013039)

URL: http://www.dei.unipd.it/~sambofra/abacus.html

Resource Type: Resource, software resource

An Algorithm based on a BivAriate CUmulative Statistic to identify SNPs significantly associated with a disease within predefined sets of SNPs such as pathways or genomic regions.

  • From Current Category

    ABMapper

Cite this (ABMapper, RRID:SCR_010242)

URL: http://hkbic.cuhk.edu.hk/software/abmapper

Resource Type: Resource, software resource

A portable, easy-to-use package for spliced alignment, junction site detection, and reads mapping. The core module was written in C++ and wrapped in PERL scripts.

  • From Current Category

Cite this (AbMining ToolBox, RRID:SCR_000090)

URL: http://sourceforge.net/projects/abmining/

Resource Type: Resource, software resource

Python scripts to analyze antibody libraries sequenced by next generation sequencing methods (454, Ion Torrent, MiSeq).

  • From Current Category

    ABNER

Cite this (ABNER, RRID:SCR_011868)

URL: http://pages.cs.wisc.edu/~bsettles/abner/

Resource Type: Resource, software resource

A software tool for molecular biology text analysis. At ABNER''s core is a statistical machine learning system using linear-chain conditional random fields (CRFs) with a variety of orthographic and contextual features.

  • From Current Category

    ABrowse

Cite this (ABrowse, RRID:SCR_000345)

URL: http://www.abrowse.org/

Resource Type: Resource, software resource

A genome browser framework which gives an open browsing experience, open data access, collaborative work support, and a framework to import annotations. Multiple data access approaches are supported for external platforms to retrieve data from ABrowse. This resource also contains an online user-space in which users can create, store and share comments, annotations and landmarks.

  • From Current Category

Cite this (AbsCN-seq, RRID:SCR_006409)

URL: http://bioinformatics.oxfordjournals.org/content/early/2014/01/02/bioinformatics.btt759.abstract?sid=e62f3c2b-26dc-428b-ba24-99e92a277d77

Resource Type: Resource, software resource

Statistical software to estimate tumor purity, ploidy and absolute copy numbers from next generation sequencing data.

  • From Current Category

Cite this (ABS filter, RRID:SCR_005328)

URL: http://updepla1srv1.epfl.ch/waszaks/absfilter/

Resource Type: Resource, software resource

R package for identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data.

  • From Current Category

    ABSOLUTE

Cite this (ABSOLUTE, RRID:SCR_005198)

URL: http://www.broadinstitute.org/cancer/cga/absolute

Resource Type: Resource, software resource

Software to estimate purity / ploidy, and from that compute absolute copy-number and mutation multiplicities. When DNA is extracted from an admixed population of cancer and normal cells, the information on absolute copy number per cancer cell is lost in the mixing. The purpose of ABSOLUTE is to re-extract these data from the mixed DNA population. This process begins by generation of segmented copy number data, which is input to the ABSOLUTE algorithm together with pre-computed models of recurrent cancer karyotypes and, optionally, allelic fraction values for somatic point mutations. The output of ABSOLUTE then provides re-extracted information on the absolute cellular copy number of local DNA segments and, for point mutations, the number of mutated alleles.

  • From Current Category

Cite this (AbundanceBin, RRID:SCR_004648)

URL: http://omics.informatics.indiana.edu/AbundanceBin/

Resource Type: Resource, software resource

An abundance-based software tool for binning metagenomic sequences, such that the reads classified in a bin belong to species of identical or very similar abundances. AbundanceBin also gives estimations of species abundances and their genome sizes -two important characteristic parameters for a microbial community.

  • From Current Category

Cite this (AbundantOTU+, RRID:SCR_016527)

URL: http://omics.informatics.indiana.edu/AbundantOTU/

Resource Type: Resource, software resource, data processing software, data analysis software, sequence analysis software, software application

Software tool for analysis of large 16S rRNA pyrosequences by using a consensus alignment algorithm, utilizing the sequence redundancy of abundant species in the pyrosequence dataset.

  • From Current Category

Cite this (ABySS-Explorer, RRID:SCR_010980)

URL: http://www.bcgsc.ca/platform/bioinfo/software/abyss-explorer

Resource Type: Resource, software resource

An interactive Java application that employs a novel graph-based representation to display a sequence assembly and associated meta data.

  • From Current Category

    ABySS

Cite this (ABySS, RRID:SCR_010709)

URL: http://www.bcgsc.ca/platform/bioinfo/software/abyss

Resource Type: Resource, software resource

Software providing a de novo, parallel, paired-end sequence assembler that is designed for short reads.

  • From Current Category

    Acacia

Cite this (Acacia, RRID:SCR_012896)

URL: http://sourceforge.net/projects/acaciaerrorcorr/?source=navbar

Resource Type: Resource, software resource

Accurate error-correction of amplicon pyrosequences.

  • From Current Category

    ACCUSA2

Cite this (ACCUSA2, RRID:SCR_000558)

URL: http://bbc.mdc-berlin.de/software

Resource Type: Resource, software resource

Multi-purpose SNV calling software enhanced by probabilistic integration of quality scores.

  • From Current Category

    aCGH

Cite this (aCGH, RRID:SCR_013232)

URL: http://www.bioconductor.org/packages//2.10/bioc/html/aCGH.html

Resource Type: Resource, software resource

Software functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

  • From Current Category

  1. Resource Identification Portal Resources

    Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Save Your Search

    You can save any searches you perform for quick access to later from here.

  6. Query Expansion

    We recognized your search term and included synonyms and inferred terms along side your term to help get the data you are looking for.

  7. Collections

    If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  8. Sources

    Here are the sources that were queried against in your search that you can investigate further.

  9. Categories

    Here are the categories present within RRID that you can filter your data on

  10. Subcategories

    Here are the subcategories present within this category that you can filter your data on

  11. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.

X