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on page 1 showing 20 out of 69 results

Cite this (ABCDreport, RRID:SCR_016030)

URL: https://github.com/ABCD-STUDY/ABCDreport

Resource Type: Resource, software resource, software application, data analysis software, data processing software

Software application as a simple system to review study progress. Used in ABCD study.

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Cite this (ABX Guide, RRID:SCR_008214)

URL: http://www.hopkins-abxguide.org/

Resource Type: Resource, continuing medical education, data or information resource, training resource, database

Concise, clinically useful information for diagnosing, managing and treating infectious diseases in adults; however it does cover some pediatric topics including vaccines. It is designed for primary care providers and other non-infectious disease specialists as a tool that can be used at the point of care to assist in prescribing antibiotics.

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Cite this (Ascidian Stock Center (ASC), RRID:SCR_014949)

URL: http://www.ascidiancenter.ucsb.edu/index.html

Resource Type: Resource, biomaterial supply resource, material resource, organism supplier

Supplier of Ciona (C. robusta and C. savignyi) adults and stable transgenic animals expressing tissue-specific fluorescent proteins for research laboratories. This ascidian culturing facility is located at the marine laboratory of the University of California at Santa Barbara (UCSB).

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Cite this (auto-scoring, RRID:SCR_016015)

URL: https://github.com/ABCD-STUDY/auto-scoring

Resource Type: Resource, data visualization software, software application, data processing software, software resource

Visualization software that calculates derived scores for the electronic record system REDCap (Research Electronic Data Capture) to build and manage online surveys and databases. Used in the ABCD-STUDY (Adolescent Brain Cognitive Development - STUDY) report framework.

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Cite this (aux-file-upload, RRID:SCR_016026)

URL: https://github.com/ABCD-STUDY/aux-file-upload

Resource Type: Resource, software resource, software application, data transfer software, data management software, data processing software

Software application to upload functional MR imaging runs produce auxilary data that can be collected centrally. Connects to a subject database research electronic data capture (REDCap).

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Cite this (Bacillus Genetic Stock Center (BGSC), RRID:SCR_014950)

URL: http://bgsc.org/

Resource Type: Resource, biomaterial supply resource, material resource

Supplier of genetically characterized strains, cloning vectors, and bacteriophages for the genus Bacillus and related organisms. The BGSC can distribute these materials to qualified scientists and educators throughout the world.

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Cite this (Big Ten Cancer Research Consortium, RRID:SCR_004025)

URL: https://www.bigtencrc.org/

Resource Type: Resource

A consortium that aims to transform cancer research through collaborative oncology trials that leverage the scientific and clinical expertise of the Big Ten universities. The goal is to align the conduct of cancer research through collaborative, hypothesis-driven, highly translational oncology trials that leverage the scientific and clinical expertise. The clinical trials that will be developed will be linked to molecular diagnostics, enabling researchers to understand what drives the cancers to grow and what might be done to stop them from growing. The consortium also leverages geographical locations and existing relationships among the cancer centers. One of the consortium's goals is to harmonize contracts and scientific review processes to expedite clinical trials. The consortium will only focus on phase 0 to II trials because larger trials - even a randomized phase II trial - are difficult to conduct at a single cancer center.

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Cite this (BioJupies, RRID:SCR_016346)

URL: https://amp.pharm.mssm.edu/biojupies/

Resource Type: Resource, software resource, web application

Software as an open source web server that automatically generates RNA-seq data analysis of jupyter notebooks. It allows creation and containment of documents that have live code, visualizations and narrative text.

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Cite this (Biospecimen Repository and Processing Core, RRID:SCR_013792)

URL: http://biobank.duke.edu/brpc/

Resource Type: Resource, information resource

A biomaterial supply and access service resource which provides a shared resource for coordinated tissue processing and biorepository services. Services include patient identification and informed consent, specimen collection, processing and banking, and annotation of banked specimens and specimen distribution. They provide biospecimen inventory management, services, and equipment. It is a shared resource of Duke University.

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Cite this (Brain Architecture Project, RRID:SCR_004283)

URL: http://brainarchitecture.org/

Resource Type: Resource, topical portal, portal, data or information resource

Evolving portal that will provide interactive tools and resources to allow researchers, clinicians, and students to discover, analyze, and visualize what is known about the brain's organization, and what the evidence is for that knowledge. This project has a current experimental focus: creating the first brainwide mesoscopic connectivity diagram in the mouse. Related efforts for the human brain currently focus on literature mining and an Online Brain Atlas Reconciliation Tool. The primary goal of the Brain Architecture Project is to assemble available knowledge about the structure of the nervous system, with an ultimate emphasis on the human CNS. Such information is currently scattered in research articles, textbooks, electronic databases and datasets, and even as samples on laboratory shelves. Pooling the knowledge across these heterogeneous materials - even simply getting to know what we know - is a complex challenge that requires an interdisciplinary approach and the contributions and support of the greater community. Their approach can be divided into 4 major thrusts: * Literature Curation and Text Mining * Computational Analysis * Resource Development * Experimental Efforts

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    CalR

Cite this (CalR, RRID:SCR_015849)

URL: https://CalRapp.org

Resource Type: Resource, data analysis software, data processing software, software application, web application, data visualization software, software resource

A Web-based Analysis Tool for Indirect Calorimetry Experiments which measure physiological energy balance. It is a web application for indirect calorimetry analysis which generates customizable time, bar and regression plots for calorimetry data using two-, three-, and four-group templates.

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Cite this (Charles Stark Draper Laboratory, RRID:SCR_003736)

URL: http://www.draper.com/

Resource Type: Resource, organization portal, portal, data or information resource

A not-for-profit research and development laboratory focused on the design, development, and deployment of advanced technological solutions for the nation's most challenging and important problems in security, space exploration, healthcare, and energy. Their expertise includes the areas of guidance, navigation, and control systems; fault-tolerant computing; advanced algorithms and software solutions; modeling and simulation; and MEMS and multichip module technology. With a strong commitment to delivering working solutions to their sponsors, they apply their expertise to a variety of domains, including autonomous air, land, sea, and space systems; information integration; distributed sensors and networks; precision-guided munitions; and biomedical engineering; chemical/biological defense; and energy system modeling and management. When appropriate for the needs of their sponsors, they will work with commercial partners to transition their technology to commercial production.

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    Clearcut

Cite this (Clearcut, RRID:SCR_016059)

URL: http://bioinformatics.hungry.com/clearcut/

Resource Type: Resource, software resource, software application, standalone software, data processing software, data visualization software

Software as a stand-alone reference implementation for the Relaxed Neighbor Joining (RNJ) algorithm. Used in distance-based phylogenetic tree reconstruction method to process large sequence datasets.

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Cite this (Clinical and Translational Science Awards Consortium, RRID:SCR_008339)

URL: https://www.ctsacentral.org/

Resource Type: Resource, knowledge environment

National consortium of medical research institutions working together to transform the local, regional, and national environment to increase the efficiency and speed of clinical and translational research across the country. Consortium members share a common vision to reduce the time it takes for laboratory discoveries to become treatments for patients, to engage communities in clinical research efforts and to train clinical and translational researchers. This consortium includes 60 medical research institutions located throughout the nation, linking them together to energize the discipline of clinical and translational science. The CTSA consortium has five Strategic Goals: * National Clinical and Translational Research Capability * The Training and Career Development of Clinical and Translational Scientists * Consortium-Wide Collaborations * The Health of our Communities and the Nation * T1 Translational Research

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Cite this (Collaboratory of AIDS Researchers for Eradciation (CARE), RRID:SCR_013681)

URL: https://www.delaneycare.org/index.php

Resource Type: Resource, organization portal, portal, consortium, data or information resource

The Collaboratory of AIDS Researchers for Eradication (CARE) is a consortium of scientific experts in the field of HIV latency from several U.S. and European academic research institutions as well as Merck Research Laboratories working together to find a cure for HIV.

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Cite this (Concavity, RRID:SCR_016063)

URL: http://compbio.cs.princeton.edu/concavity/

Resource Type: Resource, software resource, software toolkit, software application

Software for predicting protein ligand binding sites that integrate evolutionary sequence conservation estimates with structure-based methods for identifying protein surface cavities. Used in predicting catalytic sites and drug binding pockets.

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Cite this (Conservation, RRID:SCR_016064)

URL: http://compbio.cs.princeton.edu/conservation/

Resource Type: Resource, software resource, software toolkit, software application

Software for scoring protein sequence conservation using the Jensen-Shannon divergence. It can be used to predict catalytic sites and residues near bound ligands.

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Cite this (Cooperative Human Tissue Network, RRID:SCR_004446)

URL: http://chtn.nci.nih.gov

Resource Type: Resource, biomaterial supply resource, material resource, tissue bank

The Cancer Diagnosis Program of the National Cancer Institute (NCI) initiated the Cooperative Human Tissue Network (CHTN) in 1987 to provide increased access to human tissue for basic and applied scientists from academia and industry to accelerate the advancement of discoveries in cancer diagnosis and treatment. This unique resource provides remnant human tissues and fluids from routine procedures to investigators who utilize human biospecimens in their research. Unlike tissue banks, the CHTN works prospectively with each investigator to tailor specimen acquisition and processing to meet their specific project requirements. Because the CHTN is funded by the NCI, the CHTN is able to maintain nominal processing fees for its services. The CHTN is comprised of five adult divisions and one pediatric division. Each of the adult divisions coordinates investigator applications/requests based upon the investigator's geographic location within North America. The Pediatric Division manages all investigators who request pediatric specimens only. The CHTN divisions share coordination for requests from outside North America. The CHTN divisions work both independently with individual investigators and together as a seamless unit to fulfill requests that are difficult to serve by any single division. The CHTN's unique informatics system allows each division to effectively communicate and network the needs of its investigators to all CHTN divisions. The Network as a whole can then help fulfill an investigator's request. Biospecimens from surgeries, autopsies and other routine procedures: Malignant, Benign, Diseased, Normal, Biofluids (urine, serum, plasma, buffy coat) High quality specimens at LOW processing fees: Fresh, Frozen, Floating in fixative, RNAlater, Paraffin embedded or and/or unstained slides

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Cite this (Cooperative Human Tissue Network Western Division at Vanderbilt University Medical Center, RRID:SCR_006661)

URL: http://www.mc.vanderbilt.edu/root/vumc.php?site=chtn%20western%20division

Resource Type: Resource, biomaterial supply resource, material resource, tissue bank

The Cooperative Human Tissue Network- Western Division at Vanderbilt University Medical Center is one of six institutions throughout the country funded by the National Cancer Institutes to procure and distribute remnant human tissues to biomedical researchers throughout the United States and Canada. CHTN operates through a shared networking system which allows investigators greater access to available research specimens. CHTN offers a variety of preparation and preservation techniques to ensure investigators are receiving the quality specimens needed for research. Remnant tissues are obtained from surgical resections and autopsies and are procured to the specifications of the investigator.

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Cite this (delay-discounting, RRID:SCR_016031)

URL: https://github.com/ABCD-STUDY/delay-discounting

Resource Type: Resource, software resource, software application

Software that performs a delay-discounting task measuring impulsivity. Used in ABCD study.

  • From Current Category

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