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on page 1 showing 20 out of 43 results from 1 sources

Cite this (ABCDreport, RRID:SCR_016030)

URL: https://github.com/ABCD-STUDY/ABCDreport

Resource Type: Resource, software resource, software application, data analysis software, data processing software

Software application as a simple system to review study progress. Used in ABCD study.

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Cite this (Alzheimers Disease Genetics Consortium, RRID:SCR_004004)

URL: http://www.adgenetics.org/

Resource Type: Resource, data set, organization portal, portal, consortium, data or information resource

Consortium to conduct genome-wide association studies (GWAS) to identify genes associated with an increased risk of developing late-onset Alzheimer''''s disease (LOAD). The goal of the ADGC is to identify genetic variants associated with risk for AD. It plans to do this through the following collaborative goals: # Identify genes responsible for AD susceptibility # Identify AD sub-phenotype genes rate-of-progression plaque / tangle load / distribution biomarker variability # Generate a genetic data resource for the AD research community Data generated by ADGC is available at the following website: https://www.niagads.org/content/alzheimers-disease-genetics-consortium-adgc-collection

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Cite this (Ascidian Stock Center (ASC), RRID:SCR_014949)

URL: http://www.ascidiancenter.ucsb.edu/index.html

Resource Type: Resource, biomaterial supply resource, material resource, organism supplier

Supplier of Ciona (C. robusta and C. savignyi) adults and stable transgenic animals expressing tissue-specific fluorescent proteins for research laboratories. This ascidian culturing facility is located at the marine laboratory of the University of California at Santa Barbara (UCSB).

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Cite this (auto-scoring, RRID:SCR_016015)

URL: https://github.com/ABCD-STUDY/auto-scoring

Resource Type: Resource, data visualization software, software application, data processing software, software resource

Visualization software that calculates derived scores for the electronic record system REDCap (Research Electronic Data Capture) to build and manage online surveys and databases. Used in the ABCD-STUDY (Adolescent Brain Cognitive Development - STUDY) report framework.

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Cite this (aux-file-upload, RRID:SCR_016026)

URL: https://github.com/ABCD-STUDY/aux-file-upload

Resource Type: Resource, software resource, software application, data transfer software, data management software, data processing software

Software application to upload functional MR imaging runs produce auxilary data that can be collected centrally. Connects to a subject database research electronic data capture (REDCap).

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Cite this (Benchling, RRID:SCR_013955)

URL: https://benchling.com

Resource Type: Resource, software resource, service resource, computational hosting, web application

An online resource which helps researchers manage and organize labs and experimental results by supplying molecular biology software tools for experimental design and data analysis. Benchling provides tools for functions such as primer design and colony counting as well as CRISPR guide design and automated Gibson and Golden Gate cloning. Users can take notes in line with data, link data across entries, keep files and data in one place, and manage and keep track of team progress. An enterprise version of Benchling is available for scientists working within an organization with additional administrative, compliance, and security protocols.

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Cite this (Beta Cell Biology Consortium, RRID:SCR_005136)

URL: http://www.betacell.org/

Resource Type: Resource, organization portal, organism supplier, antibody supplier, database, biomaterial supply resource, biospecimen repository, experimental protocol, consortium, narrative resource, material resource, service resource, portal, storage service resource, cell repository, reagent supplier, data repository, material storage repository, data or information resource

THIS RESOURCE IS NO LONGER IN SERVICE, documented on August 1, 2015. However, its information is still hosted on SciCrunch in our Data section.

Consortium that aims to facilitate interdisciplinary collaborations to advance the understanding of pancreatic islet development and function. Its goal is to develop innovative therapies to correct the loss of beta cell mass in diabetes, including cell reprogramming, regeneration and replacement. They are responsible for collaboratively generating the necessary reagents, mouse strains, antibodies, assays, protocols, technologies and validation assays that are beyond the scope of any single research effort.

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Cite this (Brain Architecture Project, RRID:SCR_004283)

URL: http://brainarchitecture.org/

Resource Type: Resource, topical portal, portal, data or information resource

Evolving portal that will provide interactive tools and resources to allow researchers, clinicians, and students to discover, analyze, and visualize what is known about the brain's organization, and what the evidence is for that knowledge. This project has a current experimental focus: creating the first brainwide mesoscopic connectivity diagram in the mouse. Related efforts for the human brain currently focus on literature mining and an Online Brain Atlas Reconciliation Tool. The primary goal of the Brain Architecture Project is to assemble available knowledge about the structure of the nervous system, with an ultimate emphasis on the human CNS. Such information is currently scattered in research articles, textbooks, electronic databases and datasets, and even as samples on laboratory shelves. Pooling the knowledge across these heterogeneous materials - even simply getting to know what we know - is a complex challenge that requires an interdisciplinary approach and the contributions and support of the greater community. Their approach can be divided into 4 major thrusts: * Literature Curation and Text Mining * Computational Analysis * Resource Development * Experimental Efforts

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Cite this (Clinical and Translational Science Awards Consortium, RRID:SCR_008339)

URL: https://www.ctsacentral.org/

Resource Type: Resource, knowledge environment

National consortium of medical research institutions working together to transform the local, regional, and national environment to increase the efficiency and speed of clinical and translational research across the country. Consortium members share a common vision to reduce the time it takes for laboratory discoveries to become treatments for patients, to engage communities in clinical research efforts and to train clinical and translational researchers. This consortium includes 60 medical research institutions located throughout the nation, linking them together to energize the discipline of clinical and translational science. The CTSA consortium has five Strategic Goals: * National Clinical and Translational Research Capability * The Training and Career Development of Clinical and Translational Scientists * Consortium-Wide Collaborations * The Health of our Communities and the Nation * T1 Translational Research

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Cite this (Collaboratory of AIDS Researchers for Eradciation (CARE), RRID:SCR_013681)

URL: https://www.delaneycare.org/index.php

Resource Type: Resource, organization portal, portal, consortium, data or information resource

The Collaboratory of AIDS Researchers for Eradication (CARE) is a consortium of scientific experts in the field of HIV latency from several U.S. and European academic research institutions as well as Merck Research Laboratories working together to find a cure for HIV.

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Cite this (delay-discounting, RRID:SCR_016031)

URL: https://github.com/ABCD-STUDY/delay-discounting

Resource Type: Resource, software resource, software application

Software that performs a delay-discounting task measuring impulsivity. Used in ABCD study.

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Cite this (Diabetes Research Centers, RRID:SCR_014535)

URL: https://diabetescenters.org/centers

Resource Type: Resource, disease-related portal, topical portal, portal, organization portal, data or information resource

Integrated program of diabetes, endocrinology and metabolism research.

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Cite this (eprime-data-clean, RRID:SCR_016020)

URL: https://github.com/ABCD-STUDY/eprime-data-clean

Resource Type: Resource, software resource, software application, data processing software, data management software

Software to convert E-Prime (software tool for psychology computerized experiment design, data collection, and analysis) generated files to CSV files without errors during conversion. The ABCD project is using E-Prime to run behavioral tests.

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Cite this (Fast-Track-Image-Sharing, RRID:SCR_016021)

URL: https://github.com/ABCD-STUDY/Fast-Track-Image-Sharing

Resource Type: Resource, software resource, software application, data transfer software, data management software, data processing software

Software for sharing the ABCD (Adolescent Brain Cognitive Development) study data on the National Data Archive (NDA).

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Cite this (FIONA-protocol-compliance, RRID:SCR_016027)

URL: https://github.com/ABCD-STUDY/FIONA-protocol-compliance

Resource Type: Resource, software resource, software application, data analysis software, data processing software

Software that contains multiple sequential lines of MATLAB commands and function calls for numerical computing for ABCD study protocol compliance.

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Cite this (FIONA-QC-PHANTOM, RRID:SCR_016024)

URL: https://github.com/ABCD-STUDY/FIONA-QC-PHANTOM

Resource Type: Resource, software resource, software application, data analysis software, data processing software

Software for online quality control operations performed on Phantom MRI data. It checks the accuracy and reproducibility of data.

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Cite this (FIONASITE, RRID:SCR_016012)

URL: https://github.com/ABCD-STUDY/FIONASITE

Resource Type: Resource, data processing software, software application, data transfer software, data management software, software resource, data acquisition software

Software for uploading data to FIONA and capturing MR images and k-space data from medical image systems. It provides a web-interface to automate the data review (image viewer), integrate with the centralized electronic data record for assigning anonymized id's, and forward the data to the central archive.

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Cite this (GenomeCompiler, RRID:SCR_013988)

URL: http://www.genomecompiler.com

Resource Type: Resource, data processing software, software application, data management software, data visualization software, collaboration tool, software resource

A software platform which enables users to conduct genetic engineering with genomic manipulation tools (provided in the platform). Genome Compiler includes multiple DNA synthesis providers, lab facility services, and advanced bioinformatics tools and genetic repositories. Data can be imported from VectorNTI, SnapGene, ApE, Clone Manager, and others. The Gibson Assembly and Restriction Ligation methods are supported by Genome Compiler.

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    GitLab

Cite this (GitLab, RRID:SCR_013983)

URL: https://about.gitlab.com

Resource Type: Resource, software resource, software application, data management software

A software application which provides Git repository management with fine grained access controls, code reviews, issue tracking, activity feeds, wikis, and continuous integration. Four different versions are available, each with different packaging pricing: Community edition, Enterprise edition, Continuous integration, and GitLab.com.

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Cite this (Integrative Human Microbiome Project, RRID:SCR_015586)

URL: http://ihmpdcc.org/

Resource Type: Resource, organization portal, portal, data or information resource

Portal that serves as a common repository for diverse human microbiome datasets and minimum reporting standards. The overall mission of the HMP is to generate resources to facilitate characterization of the human microbiota to further the understanding of how the microbiome impacts human health and disease.

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