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on page 1 showing 20 out of 311 results

Cite this (HIV ontology, RRID:SCR_000908)

URL: http://purl.bioontology.org/ontology/HIV

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

Ontology that encompasses all knowledge about HIV

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Cite this (Nursing Interventions Classification, RRID:SCR_000911)

URL: http://purl.bioontology.org/ontology/NIC

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

Ontology of nursing interventions classification.

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Cite this (Bioassay Ontology, RRID:SCR_002638)

URL: http://bioassayontology.org/

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

Ontology to describe and categorize chemical biology and drug screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis. BAO is an extensible, knowledge-based, highly expressive (currently SHOIQ(D)) description of biological assays making use of descriptive logic based features of the Web Ontology Language (OWL). BAO currently has over 700 classes and also makes use of several other ontologies. It describes several concepts related to biological screening, including Perturbagen, Format, Meta Target, Design, Detection Technology, and Endpoint. Perturbagens are perturbing agents that are screened in an assay; they are mostly small molecules. Assay Meta Target describes what is known about the biological system and / or its components interrogated in the assay (and influenced by the Perturbagen). Meta target can be directly described as a molecular entity (e.g. a purified protein or a protein complex), or indirectly by a biological process or event (e.g. phosphorylation). Format describes the biological or chemical features common to each test condition in the assay and includes biochemical, cell-based, organism-based, and variations thereof. The assay Design describes the assay methodology and implementation of how the perturbation of the biological system is translated into a detectable signal. Detection Technology relates to the physical method and technical details to detect and record a signal. Endpoints are the final HTS results as they are usually published (such as IC50, percent inhibition, etc). BAO has been designed to accommodate multiplexed assays. All main BAO components include multiple levels of sub-categories and specification classes, which are linked via object property relationships forming an expressive knowledge-based representation.

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Cite this (Ontology for Genetic Susceptibility Factor, RRID:SCR_010386)

URL: http://purl.bioontology.org/ontology/OGSF

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

Application ontology to model / represent the notion of genetic susceptibility to a specific disease or an adverse event or a pathological biological process. It is developed using BFO2.0''s framwork. The ontology is under the domain of genetic epidemiology.

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Cite this (Systematized Nomenclature of Medicine - Clinical Terms, RRID:SCR_003915)

URL: http://purl.bioontology.org/ontology/SNOMEDCT

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

Ontology of SNOMED (Systematized Nomenclature of Medicine) clinical terms.

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Cite this (NHS Quality Indicators, RRID:SCR_004005)

URL: http://purl.bioontology.org/ontology/NHSQI2009

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

Ontology to organise a 2009 set of over 200 NHS quality indicators from different sources. Relationships between indicators, a basic set of inclusion / exclusion criteria, clinical pathway, clinical code and purpose (per 1992 Institute of Medicine, originally intended to categorise clinical guidelines) are identifies and made searchable.

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Cite this (Mosquito Insecticide Resistance Ontology, RRID:SCR_003864)

URL: http://purl.bioontology.org/ontology/MIRO

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

Application ontology for entities related to insecticide resistance in mosquitos

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    BFO

Cite this (BFO, RRID:SCR_004818)

URL: http://www.ifomis.org/bfo

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

A small, upper level ontology that is designed for use in supporting information retrieval, analysis and integration in scientific and other domains. BFO is a genuine upper integration in scientific and other domains. Thus it does not contain physical, chemical, biological or other terms which would properly fall within the coverage domains of the special sciences.

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    PATO

Cite this (PATO, RRID:SCR_004782)

URL: http://www.obofoundry.org/ontology/pato.html

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

Ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype annotation. The new PATO differs from the old in that the system of attributes and values has been abandoned in favor of a single hierarchy of qualities. PATO is designed to be used in conjunction with ontologies of quality-bearing entities. An example of such an entity is an insect eye (taken from the fly_anatomy ontology), which could be the bearer of the quality ''red'' (PATO:0000322). This combination is the red eye phenotype. We say that the phenotype term is ''post-coordinated'', as it is formed by coordinating two terms together. This is in contrast to ontologies of pre-coordinated phenotypes, such as the Mammalian Phenotype (MP) ontology. PATO is independent of any exchange format or database schema. One way of expressing phenotype annotation using PATO is pheno-syntax, or pheno-xml. They will also post recommendations for representing phenotypes using OWL. All representations share the same basic formal underpinnings, a combination of quality-bearing entity and a quality (the EQ model).

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Cite this (PhenomeBLAST Ontology, RRID:SCR_005139)

URL: http://purl.bioontology.org/ontology/PHENOMEBLAST

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

A cross-species phenotype and anatomy ontology resulting from combining available anatomy and phenotype ontologies and their definitions. The ontology includes phenotype definitions for yeast, mouse, fish, worm, fly and human phenotypes and diseases.

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Cite this (Loggerhead Nesting Ontology, RRID:SCR_010318)

URL: http://purl.bioontology.org/ontology/LHN

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

An ontology for Loggerhead sea turtle (Caretta caretta) nesting behavior, based on the published ethogram of Hailman and Elowson. A demonstration of ontology construction as a general technique for coding ethograms and other descriptions of behavior into machine understandable forms.

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Cite this (Regulation of Gene Expression Ontolology, RRID:SCR_006124)

URL: http://purl.bioontology.org/ontology/REXO

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

An application ontology for the domain of gene expression regulation. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI, KEGG and orthology relations.

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Cite this (Regulation of Transcription Ontology, RRID:SCR_006238)

URL: http://purl.bioontology.org/ontology/RETO

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

An application ontology for the domain of gene transcription regulation. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI, KEGG and orthology relations.

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Cite this (Enzyme Reaction Ontology for partial chemical perspectives, RRID:SCR_010316)

URL: http://purl.bioontology.org/ontology/PIERO

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

An enzyme ontology that deals with partial reactions (transformations)

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Cite this (Brucellosis Ontology, RRID:SCR_006795)

URL: http://purl.bioontology.org/ontology/IDOBRU

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

A biomedical ontology in the domain of zoonotic disease brucellosis that is caused by Brucella, a facultative intracellular baterium.

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Cite this (Physician Data Query, RRID:SCR_006833)

URL: http://cancer.gov/cancertopics/pdq/cancerdatabase

Resource Type: Resource, ontology, database, people resource, registry, controlled vocabulary, clinical trial, data or information resource

NCI''s comprehensive cancer database that contains summaries on a wide range of cancer topics; a registry of 8,000+ open and 19,000+ closed cancer clinical trials from around the world; a directory of professionals who provide genetics services; the NCI Dictionary of Cancer Terms, with definitions for 6,800+ cancer and medical terms; and the NCI Drug Dictionary, which has information on 2,300+ agents used in the treatment of cancer or cancer-related conditions. The PDQ cancer information summaries are peer reviewed and updated monthly by six editorial boards comprised of specialists in adult treatment, pediatric treatment, supportive care, screening and prevention, genetics, and complementary and alternative medicine. The Boards review current literature from more than 70 biomedical journals, evaluate its relevance, and synthesize it into clear summaries. Many of the summaries are also available in Spanish.

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Cite this (C. elegans Development Vocabulary, RRID:SCR_006811)

URL: http://purl.bioontology.org/ontology/WB-LS

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

A structured controlled vocabulary of the development of Caenorhabditis elegans.

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    BIRNLex

Cite this (BIRNLex, RRID:SCR_007326)

URL: http://fireball.drexelmed.edu/birnlex/OWLdocs/

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 26, 2011. Lexicon that provides entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design. These sources may include complex image databases, such as data from structural and functional magnetic resonance imaging (MRI) on human subjects involved in studies on Alzheimer''s disease or schizophrenia. The BIRNLex is a specialized vocabulary utilized by BIRN scientists in the context of their research, including common terms for neuroanatomy, molecular species, subject information, behavioral and cognitive processes, experimental practice and design, and the associated elements of primary data provenance required for large-scale data integration across disparate experimental studies.The BIRNLex offers well defined terms from several domains of importance to neuroimaging across scales.

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Cite this (Portfolio Management Application, RRID:SCR_010411)

URL: http://purl.bioontology.org/ontology/PMA

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

Ontology of a system for tracking grants and producing reports - Users can access grant data through a query interface and a variety of pre-defined forms and reports.

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Cite this (BioPAX Ontology of Biological Pathways, RRID:SCR_009881)

URL: http://www.biopax.org/

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

Ontology that is a standard language for formally representing biological pathways. BioPAX Level 3 supports the representation of metabolic pathways, signal transduction pathways, protein-protein interaction networks, gene regulatory networks and genetic interactions.

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