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Cite this (Expression Profiler, RRID:SCR_005821)


Resource Type: Resource, analysis service resource, data analysis service, service resource, production service resource

THIS RESOURCE IS NO LONGER IN SERVCE, documented September 2, 2016. The EP:GO browser is built into EBI's Expression Profiler, a set of tools for clustering, analysis and visualization of gene expression and other genomic data. With it, you can search for GO terms and identify gene associations for a node, with or without associated subnodes, for the organism of your choice.

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Cite this (GeneMerge, RRID:SCR_005744)


Resource Type: Resource, data analysis service, production service resource, analysis service resource, software application, service resource, software resource

THIS RESOURCE IS NO LONGER IN SERVCE, documented September 2, 2016. Web-based and standalone application that returns a wide range of functional genomic data for a given set of study genes and provides rank scores for over-representation of particular functions or categories in the data. It uses the hypergeometric test statistic which returns statistically correct results for samples of all sizes and is the #2 fastest GO tool available (Khatri and Draghici, 2005). GeneMerge can be used with any discrete, locus-based annotation data, including, literature references, genetic interactions, mutant phenotypes as well as traditional Gene Ontology queries. GeneMerge is particularly useful for the analysis of microarray data and other large biological datasets. The big advantage of GeneMerge over other similar programs is that you are not limited to analyzing your data from the perspective of a pre-packaged set of gene-association data. You can download or create gene-association files to analyze your data from an unlimited number of perspectives. Platform: Online tool, Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible

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Cite this (GUMC Department of Biostatistics Bioinformatics and Biomathematics - Liu Lab, RRID:SCR_005708)


Resource Type: Resource, laboratory portal, portal, organization portal, data or information resource

THIS RESOURCE IS NO LONGER IN SERVCE, documented September 2, 2016.

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Cite this (National Brain Databank, RRID:SCR_003606)


Resource Type: Resource, data set, data or information resource, database

THIS RESOURCE IS NO LONGER IN SERVCE, documented September 6, 2016. A publicly accessible data repository to provide neuroscience investigators with secure access to cohort collections. The Databank collects and disseminates gene expression data from microarray experiments on brain tissue samples, along with diagnostic results from postmortem studies of neurological and psychiatric disorders. All of the data that is derived from studies of the HBTRC collection is being incorporated into the National Brain Databank. This data is available to the general public, although strict precautions are undertaken to maintain the confidentiality of the brain donors and their family members. The system is designed to incorporate MIAME and MAGE-ML based microarray data sharing standards. Data from various types of studies conducted on brain tissue in the HBTRC collection will be available from studies using different technologies, such as gene expression profiling, quantitative RT-PCR, situ hybridization, and immunocytochemistry and will have the potential for providing powerful insights into the subregional and cellular distribution of genes and/or proteins in different brain regions and eventually in specific subregions and cellular subtypes.

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Cite this (Vanderbilt University Center for Human Genetics Research Computational Genomics Core, RRID:SCR_010173)


Resource Type: Resource, service resource, core facility, access service resource

Core provides software and hardware support for computing activities related to genetics and biology, as well as statistical analysis for human genetics data generated from both microsatellite markers and SNPs. Bioinformatics support, resources, and expertise are available in storing and managing demographic, clinical, genotypic, microarray, proteomic and biospecimen data.THIS RESOURCE IS NO LONGER IN SERVCE, documented January 25, 2019.

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