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Cite this (DDBJ - DNA Data Bank of Japan, RRID:SCR_002359)

URL: http://www.ddbj.nig.ac.jp

Resource Type: Resource, service resource, data or information resource, data repository, storage service resource, database

The sole nucleotide sequence data bank in Asia, which is officially certified to collect nucleotide sequences from researchers and to issue the internationally recognized accession number to data submitters. It is one of 3 summit databanks that construct the DDBJ/EMBL/GenBank International Nucleotide Sequence Database, which was established through cooperative work with EBI in Europe and NCBI in USA. Since the collected data is exchanged with EMBL-Bank/EBI; European Bioinformatics Institute and GenBank/NCBI; National Center for Biotechnology Information on a daily basis, the three data banks share virtually the same data at any given time. The virtually unified database is called INSD; International Nucleotide Sequence Database. DDBJ collects sequence data mainly from Japanese researchers, but accepts data and issues accession numbers to researchers in other countries.

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Cite this (Entrez Gene, RRID:SCR_002473)

URL: http://www.ncbi.nlm.nih.gov/gene

Resource Type: Resource, data or information resource, database

Database of compiled data on a variety of species of genes. An entry may include nomenclature, reference sequences (RefSeqs), maps, pathways, variations, phenotypes, and/or locus-specific resources worldwide. All entries follow the NCBI's format for data collections. The content of Entrez Gene represents the result of curation and automated integration of data from NCBI's Reference Sequence project (RefSeq), from collaborating model organism databases, and from many other databases available from NCBI. Records are assigned unique, stable and tracked integers as identifiers. The content (nomenclature, map location, gene products and their attributes, markers, phenotypes, and links to citations, sequences, variation details, maps, expression, homologs, protein domains and external databases) is updated as new information becomes available. Entrez Gene is a step forward from NCBI's LocusLink, with both a major increase in taxonomic scope and improved access through the many tools associated with NCBI Entrez.

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    RefSeq

Cite this (RefSeq, RRID:SCR_003496)

URL: http://www.ncbi.nlm.nih.gov/RefSeq/

Resource Type: Resource, data or information resource, database

Database that provides a comprehensive, integrated, non-redundant, well-annotated set of sequences, including genomic DNA, transcripts, and proteins. It provides a stable reference for genome annotation, gene identification and characterization, mutation and polymorphism analysis (especially RefSeqGene records), expression studies, and comparative analyses. Included are sequences from plasmids, organelles, viruses, archaea, bacteria, and eukaryotes. Each RefSeq is constructed wholly from sequence data submitted to the International Nucleotide Sequence Database Collaboration (INSDC). It is a unique resource because it provides a large, multi-species, curated sequence database representing separate but explicitly linked records from genomes to transcripts and translation products, as appropriate. Unlike the sequence redundancy found in the public sequence repositories that comprise the INSDC, (i.e., NCBI's GenBank, the European Nucleotide Archive, and the DNA Data Bank of Japan), the RefSeq collection aims to provide, for each included species, a complete set of non-redundant, extensively cross-linked, and richly annotated nucleic acid and protein records. It is recognized, however, that the coverage and finishing of public sequence data varies from organism to organism so intermediate genomic records are provided in some circumstances. The RefSeq collection is available without restriction and can be retrieved in several different ways, such as by searching or by available links in NCBI resources, including PubMed, Nucleotide, Protein, Gene, and Map Viewer, searching with a sequence via BLAST, and downloading from the RefSeq FTP site.

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