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on page 1 showing 20 out of 90 results

Cite this (Academic Seismic Portal at UTIG, RRID:SCR_000403)

URL: http://www.ig.utexas.edu/sdc/

Resource Type: Resource, service resource, data or information resource, data repository, storage service resource, database

Database of processed seismic reflection / refraction data providing access to metadata, SEG-Y files, navigation files, seismic profile images, processing histories and more. The main features of the web site include a geographic search engine using Google Plugins, a metadata search engine, and metadata pages for the various seismic programs. Metadata are uploaded into mySQL, a public-domain SQL server, and then PHP scripts query the metadata and directories, creating web pages, displaying images, and providing ftp links. The minimum requirements for data submission are: * unrestricted access to the navigation and small raster image (about 300 x 600 pixels) * file format is SEG-Y (they can help with this) * information relating geographic location to the traces in the file (this is often a big part of what they create) They also need basic descriptive information (metadata) about acquisition, navigation geometry, processing sequence and provenance (and pass some of our consistency tests). The submitted metadata is naturally highly variable but could include cruise reports, processing reports, important citations, etc.

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Cite this (Altmetric API, RRID:SCR_001736)

URL: http://www.altmetric.com/api.php

Resource Type: Resource, software resource, application programming interface, data access protocol

Application programming interface that gives one programmatic access to the article level metrics data associated with articles and datasets collected by Altmetric. It extracts, disambiguates and collates mentions of scholarly works online, allowing one to focus on one's core product.

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Cite this (Anchored Assembly, RRID:SCR_001188)

URL: http://www.spiralgenetics.com/products/

Resource Type: Resource, software resource, commercial organization

Analysis pipeline that accurately detects and maps variations that are often missed by standard analysis algorithms. It uses direct de novo read overlap assembly to accurately detect and characterize SNPs (single nucleotide polymorphisms), indels, and SVs (structural variations). The pipeline uses existing Illumina HiSeq data and does not require additional library preparation. The algorithm is optimized for projects with at least 20x coverage per chromosome set (i.e. 40x for diploid).

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Cite this (Array Studio, RRID:SCR_010970)

URL: http://www.omicsoft.com/array-studio.php

Resource Type: Resource, software resource, commercial organization

A software package which provides state of the art statistics and visualization for the analysis of high dimensional quantification data (e.g. NGS, Microarray or Taqman data), genotype data (e.g. SNP data, Copy Number data).

  • From Current Category

Cite this (ASA - Advanced Source Analysis, RRID:SCR_012867)

URL: http://www.ant-neuro.com/products/asa

Resource Type: Resource, software resource, image analysis software, image processing software, data processing software, software application

A highly flexible EEG/ERP and MEG analysis package with a variety of source reconstruction, signal analysis and MRI processing features. ASA combines functional brain imaging with the visualization and incorporation of morphological information obtained from MRI or CT. ASA is a highly interactive and flexible software tool that can be applied to neuro-physiological and clinical brain research. ASA gives a realistic impression of your experimental configuration together with topographical mapping of EEG and MEG and the results of your analysis. ASA is developed for and by people dedicated to brain research. The concept of flexibility and openness covers even most complex analysis demands. The ASA environment is particularly attractive for those that wish to develop their own methods in third party packages like Matlab and use ASA for pre-processing and visualization purposes.

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    Avadis

Cite this (Avadis, RRID:SCR_000644)

URL: http://www.avadis-ngs.com

Resource Type: Resource, data analysis software, data processing software, software library, software application, data management software, data visualization software, software resource, software toolkit, commercial organization

An integrated platform that provides analysis, management and visualization tools for next-generation sequencing data. It supports workflows for RNA-Seq, DNA-Seq, ChIP-Seq and small RNA-Seq experiments. Avadis has a built-in Gene Ontology browser to view ontology hierarchies. There are common ontology paths for multiple genes. Genes can be clustered based on ontology terms to identify functional signatures in gene expression clusters. AVADIS platform has a rich collection of data / text mining algorithms, data visualization libraries, workflow/application automation layers, and enterprise data organization functions. These functions are available as libraries that allow developers to rapidly build software prototypes, applications and off-the-shelf products. The collection of algorithms and visualizations in AVADIS grows as new applications using the platform are developed. Currently, the algorithms that AVADIS platform contains range from general purpose statistical mining and modelling algorithms, to text mining algorithms, to very application-specific algorithms for microarray / NGS data analysis, QSAR modelling and biological networks analysis. AVADIS has a collection of powerful mining algorithms like PCA, ANOVA, T-test, clustering, classification and regression methods. The range of visualizations includes most statistical and data modelling related graphing views, and very application-specific visualizations. Some of the statistical views include 2D/3D scatter plots, profile plots, heat maps, histograms and matrix plot; data modelling relevant views include dendrograms, cluster profiles, similarity images and SOM U-matrices. Application-specific views in AVADIS include pathway network views, genome browsers, chemical structure views and pipe-line views. Platform: Windows compatible, Mac OS X compatible, Linux compatible,

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Cite this (BD FACSCalibur Flow Cytometry System, RRID:SCR_000401)

URL: https://www.bdbiosciences.com/documents/FACSCalibur_FlowCytometry_TechSpec.pdf

Resource Type: Resource, material resource, resource

Automated benchtop flow cytometry system. It allows measuring four fluorochrome-conjugates, forward and side scatter.

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Cite this (Beck Hopelessness Scale, RRID:SCR_003683)

URL: http://www.pearsonclinical.com/education/products/100000105/beck-hopelessness-scale-bhs.html

Resource Type: Resource, material resource, commercial organization, assessment test provider

20-item clinical assessment to measure key aspects of hopelessness: feelings about the future, loss of motivation, and expectations. It takes 5 to 10 minutes is self-administered or verbally administered by a trained administrator.

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    BESA

Cite this (BESA, RRID:SCR_009530)

URL: http://besa.de

Resource Type: Resource, software resource, software application

Software for source analysis and dipole localization in EEG and MEG research. BESA Research has been developed on the basis of 20 years experience in human brain research by Michael Scherg, University of Heidelberg, and Patrick Berg, University of Konstanz. BESA Research is a highly versatile and user-friendly Windows program with optimized tools and scripts to preprocess raw or averaged data for source analysis. All important aspects of source analysis are displayed in one window for immediate selection of a wide range of tools. BESA Research provides a variety of source analysis algorithms, a standardized realistic head model (FEM), and allows for fast and easy hypothesis testing and integration with MRI and fMRI.

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Cite this (BioDiscovery, RRID:SCR_004557)

URL: http://www.biodiscovery.com/software/nexus-expression/

Resource Type: Resource, software resource, commercial organization

Advanced software solutions for individuals through enterprises?

  • From Current Category

Cite this (Brain Products EEG/fMRI Hardware, RRID:SCR_009443)

URL: http://www.nitrc.org/projects/eeg-fmri/

Resource Type: Resource, material resource, instrument supplier

Brain Products, manufacturers for hardware and software for neurophysiological research worldwide, is offering a whole range of products for EEG/fMRI co-registrations. Within recent years more and more researchers have been realizing the power of the combined EEG/fMRI approach and have been getting involved in this application field. Amplifiers for EEG & fMRI * BrainAmp MR * BrainAmp MR plus * BrainAmp ExG MR Electrode Cap for EEG & fMRI * BrainCap MR Accessories for EEG & fMRI * PowerPack (rechargeable battery for amplifiers) * SyncBox (to synchronize the clocks of the EEG amplifier and the MR Scanner) Sensors to be used in the MR environment * GSR MR (Galvanic Skin Response) * 3D Acceleration MR Software for EEG/fMRI recordings, artifact correction and data analysis: - BrainVision Recorder (recording) - BrainVision RecView (online artifact correction & data analysis) - BrainVision Analyzer (offline artifact correction & data analysis)

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    BxArrays

Cite this (BxArrays, RRID:SCR_010971)

URL: http://bioinforx.com/lims/online-microarray-gene-expression-data-analysis-software/bxarrays

Resource Type: Resource, software resource, commercial organization

A web-based microarray data management and microarray analysis system for researchers who need to organize microarray data efficiently and get microarray data analyzed instantly.

  • From Current Category

    CEQer

Cite this (CEQer, RRID:SCR_010813)

URL: http://www.ngsbicocca.org/html/ceqer.html

Resource Type: Resource, software resource

A graphical, event-driven tool for CNA/AI-coupled analysis of exome sequencing reads.

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Cite this (CERAD - Consortium to Establish a Registry for Alzheimer's Disease, RRID:SCR_003016)

URL: http://cerad.mc.duke.edu/

Resource Type: Resource, organization portal, assessment test provider, database, consortium, portal, material resource, data or information resource

Consortium that developed brief, standardized and reliable procedures for the evaluation and diagnosis of patients with Alzheimer's disease (AD) and other dementias of the elderly. These procedures included data forms, flipbooks, guidebooks, brochures, instruction manuals and demonstration tapes, which are now available for purchase. The CERAD assessment material can be used for research purposes as well as for patient care. CERAD has developed several basic standardized instruments, each consisting of brief forms designed to gather data on normal persons as well as on cognitively impaired or behaviorally disturbed individuals. Such data permit the identification of dementia based on clinical, neuropsychological, behavioral or neuropathological criteria. Staff at participating CERAD sites were trained and certified to administer the assessment instruments and to evaluate the subjects enrolled in the study. Cases and controls were evaluated at entry and annually thereafter including (when possible) autopsy examination of the brain to track the natural progression of AD and to obtain neuropathological confirmation of the clinical diagnosis. The CERAD database has become a major resource for research in Alzheimer's disease. It contains longitudinal data for periods as long as seven years on the natural progression of the disorder as well as information on clinical and neuropsychological changes and neuropathological manifestations.

  • From Current Category

Cite this (Cerner Millenium, RRID:SCR_013581)

URL: http://www.cerner.com/

Resource Type: Resource, narrative resource, portal, standard specification, data or information resource

A global health company contributing to the systemic improvement of health care delivery and the health of communities. We are transforming health care by eliminating error, variance and waste for health care providers and consumers around the world. Our solutions optimize processes for health care organizations ranging from single-doctor practices to entire countries, for the pharmaceutical and medical device industries, and for the field of health care as a whole. Our solutions are licensed by more than 9,000 facilities worldwide. We invite you to join us in our quest to make health care become all it should be. Since our company began, we have been committed to transformational change in the vital task of keeping people well. Now more than ever, our focus is on developing the innovations that will help improve the entire health care system. Ultimately, as our CEO Neal Patterson has said, health care is personal. Because in the end, nothing matters more than our health and our families. We''re changing the way people: * Use and share information ** We empower providers to base decisions on best clinical evidence. ** We coordinate care across traditionally fragmented health care systems. ** We provide clinical organizations with the reliability, flexibility and continuous innovation available through cloud-based intelligence. ** We provide contextually relevant information to the right people at the right time. * Pay for health and care ** We believe IT investment must be matched with innovative payment models that are much easier to navigate. ** We are replacing the current, claims-based system with streamlined electronic payments. ** We develop ways to reward people and their providers for proactively achieving positive health goals. * Think about health ** We empower people to actively engage in their health by providing them with a standards-based, lifetime Personal Health Record. ** We are replacing the reactive sick care model with a proactive, personalized plan for health.

  • From Current Category

Cite this (CGH Fusion, RRID:SCR_000295)

URL: https://www.infoquant.com/cghfusion

Resource Type: Resource, software resource, commercial organization

Software for DNA Copy Number and loss of heterozygosity (LOH) analysis designed with high-throughput diagnostic laboratories in mind.

  • From Current Category

Cite this (ChromasPro, RRID:SCR_000229)

URL: http://technelysium.com.au/?page_id=27

Resource Type: Resource, software resource, data acquisition software, data processing software, software application

A software which is able to assemble data from 454 and Illumina next-generation sequencers, with up to 100,000 sequences if 2 Gb RAM is available.

  • From Current Category

    Chromas

Cite this (Chromas, RRID:SCR_000598)

URL: http://technelysium.com.au/?page_id=13

Resource Type: Resource, software resource, commercial organization

Software ideal for the most basic of sequencing projects, where assembly of multiple sequences is not required.

  • From Current Category

Cite this (CLC Genomics Workbench, RRID:SCR_011853)

URL: http://www.clcbio.com/products/clc-genomics-workbench/

Resource Type: Resource, software resource, commercial organization

A comprehensive and user-friendly analysis package for analyzing, comparing, and visualizing next generation sequencing data.

  • From Current Category

Cite this (CLC Main Workbench, RRID:SCR_000354)

URL: http://www.clcbio.com/products/clc-main-workbench/

Resource Type: Resource, software resource, software toolkit

A suite of software for DNA, RNA and protein sequence data analysis. The software allows for the analysis and visualization of Sanger sequencing data as well as gene expression analysis, molecular cloning, primer design, phylogenetic analyses, and sequence data management.

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