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on page 1 showing 20 out of 855 results

Cite this (Digimizer, RRID:SCR_014783)

URL: https://www.digimizer.com/

Resource Type: Resource, software resource, image analysis software, data processing software, software application

Image analysis software package that allows precise manual measurements and automatic object detection with measurements of object characteristics. Pictures may be X-rays, micrographs, and the like. Supported file formats include JPG, GIF, TIFF, BMP, PNG, WMF, EMF and DICOM files. Image rotation and light can be edited.

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    RSRef

Cite this (RSRef, RRID:SCR_017211)

URL: https://biochem.missouri.edu/chapman/software.htm

Resource Type: Resource, software resource, software application, data processing software

Software for fitting of atomic models into density maps derived from x-ray crystallography or electron microscopy.

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    NVM

Cite this (NVM, RRID:SCR_000600)

URL: http://neuromorphometrics.org:8080/nvm/index.html

Resource Type: Resource, software resource, software application, data analysis software, data processing software, data visualization software

Software tool for quantitative neuroanatomical measurements in volumetric image data. Used to draw regions of interest for subsequent fMRI analysis.

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Cite this (NIDDK Information Network, RRID:SCR_001606)

URL: http://dknet.org/

Resource Type: Resource, resource, database, service resource, portal, storage service resource, data repository, community building portal, data or information resource

Community-based network to serve needs of basic and clinical investigators that includes large pools of data and research resources relevant to mission of National Institute of Diabetes and Digestive and Kidney Disease.

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    Shiny

Cite this (Shiny, RRID:SCR_001626)

URL: http://www.rstudio.com/shiny/

Resource Type: Resource, software resource, software toolkit

Open source R package that provides web framework for building web applications using R. Used to create interactive web apps in native R, without needing to use HTML, CSS, or JavaScript.

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Cite this (NextGen Sequence Databases, RRID:SCR_002152)

URL: http://mpss.danforthcenter.org/

Resource Type: Resource, topical portal, portal, data or information resource

Informational portal that aggregates information about databases for next gen sequencing.

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Cite this (Tree of Life, RRID:SCR_002436)

URL: http://phylogenomics.blogspot.fr/

Resource Type: Resource, blog, narrative resource, data or information resource

Blog by evolutionary biologist and UC Davis professor Jonathan Eisen. Topics of his posts include microbiology, phylogenomics, product reviews, and a variety of miscellaneous topics.

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    NUTMEG

Cite this (NUTMEG, RRID:SCR_002748)

URL: http://www.radiology.ucsf.edu/research/labs/biomagnetic-imaging/nutmeg

Resource Type: Resource, 1d time-series analysis software, signal processing software, data analysis software, data processing software, image analysis software, software application, time-series analysis software, software resource

Software MEG/EEG analysis toolbox for reconstructing neural activation and overlaying it onto structural MR images. Toolbox runs under MATLAB in conjunction with SPM2 and can be used with Linux/UNIX, Mac OS X, and Windows platforms.

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Cite this (Neuroscience Information Framework, RRID:SCR_002894)

URL: http://neuinfo.org

Resource Type: Resource, database, software application, software development tool, portal, storage service resource, service resource, software resource, data repository, systems interoperability software, data or information resource

Framework for identifying, locating, relating, accessing, integrating, and analyzing information from neuroscience research. Users can search for and add neuroscience-related resources at NIF portal and receive and RRID to track and cite resources within scientific manuscripts.

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Cite this (LIPID MAPS Proteome Database, RRID:SCR_003062)

URL: http://www.lipidmaps.org/data/proteome/LMPD.php

Resource Type: Resource, data or information resource, database

Database of lipid related proteins representing human and mouse proteins involved in lipid metabolism. Collection of lipid related genes and proteins contains data for genes and proteins from Homo sapiens, Mus musculus, Rattus norvegicus, Saccharomyces cerevisiae, Caenorhabditis elegans, Escherichia coli, Macaca mulata, Drosophila melanogaster, Arabidopsis thaliana and Danio rerio.

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Cite this (Knockout Mouse Project, RRID:SCR_005571)

URL: https://www.jax.org/research-and-faculty/resources/knockout-mouse-project/high-throughput-production

Resource Type: Resource, project portal, portal, data or information resource

Project is providing critical tools for understanding gene function and genetic causes of human diseases. Project KOMP is focused on generating targeted knockout mutations in mouse ES cells. Second phase, KOMP2, relies upon successful generation of strains of knockout mice from these ES cells. Information from JAX about their contributions to KOMP project.

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Cite this (Human Phenotype Ontology Annotations, RRID:SCR_006219)

URL: http://www.human-phenotype-ontology.org

Resource Type: Resource, data set, data or information resource

Downloadable dataset of Human Phenotype Ontology (HPO) annotations. Provides standardized vocabulary of phenotypic abnormalities encountered in human disease.

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Cite this (Gene Ontology Tools, RRID:SCR_006941)

URL: http://geneontology.org/docs/tools-overview/

Resource Type: Resource, software resource, software repository, data or information resource, catalog, database

Collection of tools developed by GO Consortium and by third parties. Tools are listed by category or alphabetically and continue to be improved and expanded.

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    NONCODE

Cite this (NONCODE, RRID:SCR_007822)

URL: http://www.noncode.org/

Resource Type: Resource, data or information resource, database

Collection of non-coding RNAs (excluding tRNAs and rRNAs) as an integrated knowledge database. Used to get text information such as class,name,location,related publication,mechanism through which it exerts its function, view figures which show their location in the genome or in a specific DNA fragment, and the regulation elements flanking the ncRNA gene sequences.

  • From Current Category

Cite this ( Exon Array Browser , RRID:SCR_008712)

URL: http://www.stanford.edu/group/exonarray/cgi-bin/plot_selector.pl

Resource Type: Resource, service resource, data or information resource, database

Transcriptome database of acutely isolated purified astrocytes, neurons, and oligodendrocytes. Provides improved cell-type-specific markers for better understanding of neural development, function, and disease.

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Cite this (BrainPost, RRID:SCR_016206)

URL: http://www.brainpost.co

Resource Type: Resource, blog, narrative resource, data or information resource

Blog for summaries of neuroscience journal papers and articles. BrainPost sends its subscribers digestible and accessible versions of scientific findings in the field of neuroscience.

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Cite this (The Immunology Database and Analysis Portal (ImmPort), RRID:SCR_012804)

URL: https://www.immport.org/home

Resource Type: Resource, disease-related portal, topical portal, data repository, database, service resource, portal, storage service resource, ontology, controlled vocabulary, data or information resource

Data sharing repository of clinical trials, associated mechanistic studies, and other basic and applied immunology research programs. Platform to store, analyze, and exchange datasets for immune mediated diseases. Data supplied by NIAID/DAIT funded investigators and genomic, proteomic, and other data relevant to research of these programs extracted from public databases. Provides data analysis tools and immunology focused ontology to advance research in basic and clinical immunology.

  • From Current Category

Cite this (National Institute on Drug Abuse Center for Genetic Studies, RRID:SCR_013061)

URL: https://nidagenetics.org/

Resource Type: Resource, data set, service resource, data repository, storage service resource, data or information resource

Site for collection and distribution of clinical data related to genetic analysis of drug abuse phenotypes. Anonymous data on family structure, age, sex, clinical status, and diagnosis, DNA samples and cell line cultures, and data derived from genotyping and other genetic analyses of these clinical data and biomaterials, are distributed to qualified researchers studying genetics of mental disorders and other complex diseases at recognized biomedical research facilities. Phenotypic and Genetic data will be made available to general public on release dates through distribution mechanisms specified on website.

  • From Current Category

    ggplot2

Cite this (ggplot2, RRID:SCR_014601)

URL: https://cran.r-project.org/web/packages/ggplot2/index.html

Resource Type: Resource, data visualization software, software application, data processing software, software resource

Open source software package for statistical programming language R to create plots based on grammar of graphics. Used for data visualization to break up graphs into semantic components such as scales and layers.

  • From Current Category

Cite this (Teaching Commons, RRID:SCR_014638)

URL: http://teachingcommons.us/#annotations:TY4psokJEeaXOivKaAz4RA

Resource Type: Resource, data or information resource, database

A library of open source teaching and educational resources for professors and students. It includes resources such as textbooks, lesson plans, multimedia, and lectures from participating universities and institutions. Subject areas include the life sciences, the arts and humanities, law, social and behavioral sciences, medicine and health, engineering, education, the physical sciences, and mathematics. Users can share their own work and adopt others' on the platform.

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