Searching across hundreds of databases

Our searching services are busy right now. Your search will reload in five seconds.

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

BrainMask Volume Processing Tool (RRID:SCR_009538)


http://www.nitrc.org/projects/brainmask/

Segmentation of the brain from three-dimensional MR images is a crucial pre-processing step in morphological and volumetric brain studies. BrainMask implements a fully automatic brain segmentation algorithm that uses advanced thresholding with morphology and 3D edge detection algorithms. BrainMask demonstrates high segmentation accuracy. For a representative 26 datasets, the segmentation error averaged 3.4% ?????? 1.3% (Mikheev A et al. J Magn Reson Imag 27(6):1235-41;2008). BrainMask includes NNN - a tool based on the algorithm developed by John Sled for correcting the intensity non-uniformity in MR data (Sled JG et al. IEEE Trans Med Imag 17(1):87-97;1998). BrainMask also includes a versatile DICOM wiewer and allows to selectively load and organize DICOM images into 3D and 4D datasets.


Keywords

analyze, application, bshort/bfloat, c++, constrained region growing, dicom, image display, microsoft, magnetic resonance, region of interest, segmentation, visualization, volume measurement, volumetric analysis, win32 (ms windows), windows, windows xp

Resource ID

SCR_009538

Alternate IDs

nlx_155715

Website Status

Last checked up

Abbreviation(s)

BrainMask

Resource Type

Resource, segmentation software, image analysis software, data processing software, software application, data visualization software, software resource

Availability

NYUMC FireVoxel-BrainMask Software License Agreement

Proper citation

(BrainMask Volume Processing Tool, RRID:SCR_009538)

Other resources frequently mentioned in the literature with this resource

SciCrunch Registry

Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch are assigned RRIDs which are used to cite resources in scientific manuscripts.

Co-mentions heatmap

Load a heatmap of the top 20 resources that share the most co-mentions with this resource in the literature.


  1. Information

    Information on this specific resource.

  2. Relationships

    See other resources that this resources is related to.

  3. References

    Publications describing this resource.

  4. Referenced by

    Publications that reference this resource. These references are discovered by human submissions and automated crawling through various journals.

  5. Analytics

    Search for other resources that are referenced by publications that reference this resource.

  6. Data

    This resource is also a data repository used by SciCrunch. Search through the data.

  7. Data Licenses

    The licenses the data is under.

  8. Source

    The data repository this resource is listed from.