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5S Ribosomal RNA Database (RRID:SCR_007545)


http://biobases.ibch.poznan.pl/5SData/

A database on nucleotide sequences of 5S rRNAs and their genes. The database contains 1985 primary structures of 5S rRNA and 5S rDNA, and was last updated in 2002, according to the website. They include 60 archaebacterial, 470 eubacterial, 63 plastid, nine mitochondrial and 1383 eukaryotic sequences. The nucleotide sequences of the 5S rRNAs or 5S rDNAs are divided according to the taxonomic position of the source organisms. The sequences for particular organisms can be retrieved as single files using a taxonomic browser or in multiple sequence structural alignments. The multiple sequence alignments of 5S ribosomal RNAs can be downloaded in TAB-delimited and FASTA formats.


Keywords

eubacteria, eukaryote, archaebacteria, mitochondrion, model rna molecule, nucleotide sequence database, ribosome, plastid, ribosomal rna, sequence alignment, rna-protein interaction, rna, rna structure, 5s rrna, gene, 5s rdna, mitochondria, sequence, alignment

Resource ID

SCR_007545

Alternate IDs

nif-0000-02526

Website Status

Last checked up

Abbreviation(s)

5S Ribosomal RNA Database

Species

bacteria, archaea, eukaryota

Resource Type

Resource, data or information resource, database

Funding Information

Deutsche Agentur fur Raumfahrtangelegenheiten GmbH, Fonds der Chemischen Industrie e.V., Polish State Committee for Scientific Research, DFG

Proper citation

(5S Ribosomal RNA Database, RRID:SCR_007545)

Old URLs

http://rose.man/poznan. pl/5SData/index.html

Reference

PMID:10592212

Other resources frequently mentioned in the literature with this resource

SciCrunch Registry

Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch are assigned RRIDs which are used to cite resources in scientific manuscripts.

5S ribosomal RNA database Y2K.

  • Szymanski M
  • Nucleic Acids Res.
  • 2000 Jan 1

This paper presents the updated version (Y2K) of the database of ribosomal 5S ribonucleic acids (5S rRNA) and their genes (5S rDNA), http://rose.man/poznan.pl/5SData/index.html. This edition of the database contains 1985primary structures of 5S rRNA and 5S rDNA. They include 60 archaebacterial, 470 eubacterial, 63 plastid, nine mitochondrial and 1383 eukaryotic sequences. The nucleotide sequences of the 5S rRNAs or 5S rDNAs are divided according to the taxonomic position of the source organisms.

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