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ADGO (RRID:SCR_006343)


http://www.btool.org/ADGO2

A web-based tool that provides composite interpretations for microarray data comparing two sample groups as well as lists of genes from diverse sources of biological information. It provides multiple gene set analysis methods for microarray inputs as well as enrichment analyses for lists of genes. It screens redundant composite annotations when generating and prioritizing them. It also incorporates union and subtracted sets as well as intersection sets. Users can upload their gene sets (e.g. predicted miRNA targets) to generate and analyze new composite sets.


Keywords

microarray, gene, annotation

Resource ID

SCR_006343

Alternate IDs

OMICS_02229

Website Status

Last checked up

Abbreviation(s)

ADGO

Species

human, mouse, rat, saccharomyces cerevisiae, drosophila melanogaster, caenorhabditis elegans, arabidopsis thaliana, escherichia coli

Resource Type

Resource, analysis service resource, data analysis service, service resource, production service resource

Availability

Acknowledgement requested

Proper citation

(ADGO, RRID:SCR_006343)

Reference

PMID:21624890

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ADGO 2.0: interpreting microarray data and list of genes using composite annotations.

  • Chi SM
  • Nucleic Acids Res.
  • 2011 Jul 30

ADGO 2.0 is a web-based tool that provides composite interpretations for microarray data comparing two sample groups as well as lists of genes from diverse sources of biological information. Some other tools also incorporate composite annotations solely for interpreting lists of genes but usually provide highly redundant information. This new version has the following additional features: first, it provides multiple gene set analysis methods for microarray inputs as well as enrichment analyses for lists of genes. Second, it screens redundant composite annotations when generating and prioritizing them. Third, it incorporates union and subtracted sets as well as intersection sets. Lastly, users can upload their own gene sets (e.g. predicted miRNA targets) to generate and analyze new composite sets. The first two features are unique to ADGO 2.0. Using our tool, we demonstrate analyses of a microarray dataset and a list of genes for T-cell differentiation. The new ADGO is available at http://www.btool.org/ADGO2.

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