Searching across hundreds of databases

Our searching services are busy right now. Your search will reload in five seconds.

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

Database of all of the publicly available, complete prokaryotic genomes. In addition to having all of the organisms on a single website, common data types across all genomes in the CMR make searches more meaningful, and cross genome analysis highlight differences and similarities between the genomes. CMR offers a wide variety of tools and resources, all of which are available off of our menu bar at the top of each page. Below is an explanation and link for each of these menu options. * Genome Tools: Find organism lists as well as summary information and analyses for selected genomes. * Searches: Search CMR for genes, genomes, sequence regions, and evidence. * Comparative Tools: Compare multiple genomes based on a variety of criteria, including sequence homology and gene attributes. SNP data is also found under this menu. * Lists: Select and download gene, evidence, and genomic element lists. * Downloads: Download gene sequences or attributes for CMR organisms, or go to our FTP site. * Carts: Select genome preferences from our Genome Cart or download your Gene Cart genes. The Omniome is the relational database underlying the CMR and it holds all of the annotation for each of the CMR genomes, including DNA sequences, proteins, RNA genes and many other types of features. Associated with each of these DNA features in the Omniome are the feature coordinates, nucleotide and protein sequences (where appropriate), and the DNA molecule and organism with which the feature is associated. Also available are evidence types associated with annotation such as HMMs, BLAST, InterPro, COG, and Prosite, as well as individual gene attributes. In addition, the database stores identifiers from other centers such as GenBank and SwissProt, as well as manually curated information on each genome or each DNA molecule including website links. Also stored in the Omniome are precomputed homology data, called All vs All searches, used throughout the CMR for comparative analysis.


Keywords

microbial, prokaryotic, genome, annotation, dna sequence, protein, rna gene, blast

Resource ID

SCR_005398

Alternate IDs

nif-0000-03555

Website Status

Last checked up

Parent Organization

J. Craig Venter Institute

Abbreviation(s)

JCVI_CMR, JCVI CMR, TIGR_CMR, TIGR CMR

Species

prokaryote

Resource Type

Resource, data analysis service, production service resource, analysis service resource, database, service resource, data or information resource

Funding Information

NSF, NIAID, DOE

Used By

NIF Data Federation

Availability

Free

Synonym(s)

Comprehensive Microbial Resource, JCVI Comprehensive Microbial Resource, J. Craig Venter Institute Comprehensive Microbial Resource, CMR

Proper citation

(JCVI CMR, RRID:SCR_005398)

Other resources frequently mentioned in the literature with this resource

SciCrunch Registry

Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch are assigned RRIDs which are used to cite resources in scientific manuscripts.

Co-mentions heatmap

Load a heatmap of the top 20 resources that share the most co-mentions with this resource in the literature.


  1. Information

    Information on this specific resource.

  2. Relationships

    See other resources that this resources is related to.

  3. References

    Publications describing this resource.

  4. Referenced by

    Publications that reference this resource. These references are discovered by human submissions and automated crawling through various journals.

  5. Analytics

    Search for other resources that are referenced by publications that reference this resource.

  6. Data

    This resource is also a data repository used by SciCrunch. Search through the data.

  7. Data Licenses

    The licenses the data is under.

  8. Source

    The data repository this resource is listed from.