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URL: http://www.cgat.org/~andreas/documentation/cgat/cgat.html
Proper Citation: Computational Genomics Analysis Tools (RRID:SCR_006390)
Description: THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 3, 2023. A collection of tools for the computational genomicist written in the python language to assist in the analysis of genome scale data from a range of standard file formats. The toolkit enables filtering, comparison, conversion, summarization and annotation of genomic intervals, gene sets and sequences. The tools can both be run from the Unix command line and installed into visual workflow builders, such as Galaxy. Please note that the tools are part of a larger code base also including genomics and NGS pipelines. Everyone who uses parts of the CGAT code collection is encouraged to contribute. Contributions can take many forms: bugreports, bugfixes, new scripts and pipelines, documentation, tests, etc. All contributions are welcome.
Abbreviations: CGAT
Synonyms: Computational Genomics Analysis Toolkit, CGAT - Computational Genomics Analysis Tools
Resource Type: software resource, software toolkit
Defining Citation: PMID:24395753
Keywords: computational genomics, genomics, command-line, next-generation sequencing, python, pipeline, functional enrichment, clustering, metagenomic, contig, variant, analysis, filter, compare, conversion, summarization, annotation
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