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on page 3 showing 20 out of 16,721 results

    3Omics

Cite this (3Omics, RRID:SCR_014678)

URL: https://omictools.com/3omics-tool

Resource Type: Resource, software resource, web application

THIS RESOURCE IS NO LONGER IN SERVICE, documented October 19, 2016. A web tool for visualizing and integrating multiple inter- or intra-transcriptomic, proteomic, and metabolomic human data. 3Omics generates inter-omic correlation networks to visualize relationships in data with respect to time or experimental conditions for transcripts, proteins and metabolites.

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    3Scan

Cite this (3Scan, RRID:SCR_012685)

URL: http://www.scienceexchange.com/facilities/3scan

Resource Type: Resource, service resource, commercial organization, core facility, access service resource

3Scan uses the cutting edge technology of the KESM (Knife Edge Scanning Microscope) to automatically section and image samples. Knife-edge scanning, introduced in the KESM instrument, not only preserves image registration throughout the depth of the specimen block but also isolates the tissue above the knife from that below to eliminate undesirable events (back-scattering of light and bleaching of fluorescent-stained tissue below the knife). Using the KESM, 3Scan is able to scan a one cc^3 block of tissue (for example, a whole mouse brain) at submicron resolution in under 100 hours. With this resolution (a voxel size of 0.6 um x 0.7 um x 1.0 um) 3Scan is able to show cell scale phenomena in the context of a compete organ. In the example of a whole mouse brain this means that 3Scan is able to accurately model every neuron in the mouse brain sample.

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Cite this (499 fROI atlas, RRID:SCR_014756)

URL: http://findlab.stanford.edu/functional_ROIs.html

Resource Type: Resource, atlas, data or information resource

Atlas of functional ROIs (fROIs) containing 499 regions, with extensive gray matter coverage. Atlases are available for download directly from the website.

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Cite this (4D Atlases Construction, RRID:SCR_002227)

URL: http://www.med.unc.edu/bric/ideagroup/free-softwares/4d-atlases-construction

Resource Type: Resource, software resource

Software package for constructing longitudinal atlases, which are the necessary steps for many brain-related applications.

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Cite this (4D Nucleome , RRID:SCR_016925)

URL: https://www.4dnucleome.org

Resource Type: Resource, project portal, portal, data or information resource

Research project to understand the principles underlying nuclear organization in space and time, the role nuclear organization plays in gene expression and cellular function, and how changes in nuclear organization affect normal development and diseases. Portal provides free access to datasets, software packages, and protocols to advance biomedical research of nuclear architecture. Aims to develop and apply approaches to map the structure and dynamics of the human and mouse genomes.

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Cite this (4D-PARSeR Pathological Anatomy Regression via Segmentation and Registration, RRID:SCR_002480)

URL: http://www.nitrc.org/projects/parser_4d/

Resource Type: Resource, segmentation software, image analysis software, data processing software, software application, software resource, registration software

A tool for analyzing 4D images with pathology. Originally developed for processing longitudinal images of patients with traumatic brain injury, the tool contains new image analysis algorithms that combine registration and segmentation in a coherent framework, accounting for extreme changes due to extensive tissue damage.

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    4Peaks

Cite this (4Peaks, RRID:SCR_000015)

URL: http://nucleobytes.com/index.php/4peaks

Resource Type: Resource, software resource, software application

Software application for viewing and editing sequence trace files.

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Cite this (4TU.Datacentrum, RRID:SCR_006295)

URL: http://researchdata.4tu.nl/en/home/

Resource Type: Resource, service resource, data or information resource, data repository, storage service resource, database

Multidisciplinary data repository for a consortium of universities in the Netherlands housing over datasets with a focus on scientific and technical data. Most data were produced by Dutch researchers including datasets from doctoral research. Users can deposit up to 1G by completing an upload form. Collection development foci include applied sciences, biomedical technology, earth sciences, and technology and construction. 4TU.Datacentrum is a collaboration of the libraries of the three leading technical universities - Delft University of Technology, Eindhoven University of Technology and the University of Twente.

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Cite this (5 prime end Serial Analysis of Gene Expression Database, RRID:SCR_001680)

URL: http://5sage.gi.k.u-tokyo.ac.jp/

Resource Type: Resource, data or information resource, database

THIS RESOURCE IS NO LONGER IN SERVICE, documented on October 30, 2012. A database that displays the observed frequencies of individual 5' end SAGE tags and previously unknown transcription start sites in the promoter regions, introns and intergenic regions of known genes. 5'SAGE will be useful for analyzing promoter regions and start site variation in different tissues, and is freely available.

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    5 PRIME

Cite this (5 PRIME, RRID:SCR_008982)

URL: http://www.5prime.com

Resource Type: Resource, material resource, reagent supplier, commercial organization, antibody supplier

An Antibody supplier

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Cite this (5S Ribosomal RNA Database, RRID:SCR_007545)

URL: http://biobases.ibch.poznan.pl/5SData/

Resource Type: Resource, data or information resource, database

A database on nucleotide sequences of 5S rRNAs and their genes. The database contains 1985 primary structures of 5S rRNA and 5S rDNA, and was last updated in 2002, according to the website. They include 60 archaebacterial, 470 eubacterial, 63 plastid, nine mitochondrial and 1383 eukaryotic sequences. The nucleotide sequences of the 5S rRNAs or 5S rDNAs are divided according to the taxonomic position of the source organisms. The sequences for particular organisms can be retrieved as single files using a taxonomic browser or in multiple sequence structural alignments. The multiple sequence alignments of 5S ribosomal RNAs can be downloaded in TAB-delimited and FASTA formats.

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Cite this (60-Second Mind, RRID:SCR_000925)

URL: http://www.scientificamerican.com/podcast/60-second-mind/

Resource Type: Resource, narrative resource, data or information resource

A podcast of neuroscience news in minute-intervals from the Scientific American. New episodes become available every Saturday.

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Cite this (7500 Real-Time PCR Software, RRID:SCR_014596)

URL: https://www.thermofisher.com/us/en/home/technical-resources/software-downloads/applied-biosystems-7500-real-time-pcr-system.html

Resource Type: Resource, software resource, data acquisition software, data processing software, software application

A software used to control and operate the Applied Biosystems 7500 Real-Time PCR system.

  • From Current Category

Cite this (7T Structural MRI scans ATAG, RRID:SCR_014084)

URL: http://www.nitrc.org/projects/atag_mri_scans/

Resource Type: Resource, data set, atlas, data or information resource

Data sets from the atlasing of the basal ganglia (ATAG) consortium, which provides ultra-high resolution 7Tesla (T) magnetic resonance imaging (MRI) scans from young, middle-aged, and elderly participants. They include whole-brain and reduced field-of-view MP2RAGE and T2 scans with ultra-high resolution at a sub millimeter scale. The data can be used to develop new algorithms that help building new high-resolution atlases both in the basic and clinical neurosciences. They can also be used to inform the exact positioning of deep-brain electrodes relevant in patients with Parkinsons disease and neuropsychiatric diseases.

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Cite this (90 fROI atlas, RRID:SCR_014757)

URL: http://findlab.stanford.edu/functional_ROIs.html

Resource Type: Resource, atlas, data or information resource

Atlas of functional ROI's, including individual networks (auditory network, sensorimotor network, etc.). Atlases of individual networks and combined networks are available for download directly from the website.

  • From Current Category

Cite this (959 Nematode Genomes, RRID:SCR_006068)

URL: http://www.nematodes.org/nematodegenomes/index.php/Main_Page

Resource Type: Resource, wiki, narrative resource, data or information resource

A collaborative wiki that collates information on completed, ongoing and planned genome and transcriptome sequencing projects on species from phylum Nematoda. The intention is to encourage genome sequencing across the diversity of the phylum Nematoda. Wiki includes: * Published complete nematode genomes: A dynamically generated table of all species for which the genome is published. * Nematode species with genomes in progress: A dynamically generated table of all species for which a genome project is underway. Users may add species to the list * Proposed nematode genome projects: To propose a species for genome sequencing, edit its species page, and set the genome project status to proposed. * BLAST server: Search a number of the nematode-genomes-in-progress with genes of your choice. Currently there are 12 draft genomes available... * Genomes with Data available: Genomes with data available for download. Users may add more data URLs to strain pages or update the URLs.

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Cite this (973 Program, RRID:SCR_011494)

URL: http://www.most.gov.cn/eng/programmes1/200610/t20061009_36223.htm

Resource Type: Resource, regional funding resource, service resource, training service resource, funding resource

A Chinese-based national program for furthering basic scientific research. The program has three main aims, which include: supporting research on issues concerning national socioeconnomic development, creating a highly-skilled cohort of scientists, and improving program management to encourage innovation.

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    A5-miseq

Cite this (A5-miseq, RRID:SCR_012148)

URL: http://sourceforge.net/projects/ngopt/

Resource Type: Resource, software resource

Software that produces high quality microbial genome assemblies on a laptop computer without any parameter tuning. A5-miseq does this by automating the process of adapter trimming, quality filtering, error correction, contig and scaffold generation, and detection of misassemblies. Unlike the original A5 pipeline, A5-miseq can use long reads from the Illumina MiSeq, use read pairing information during contig generation, and includes several improvements to read trimming.

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    A5

Cite this (A5, RRID:SCR_013068)

URL: http://code.google.com/p/ngopt/wiki/A5PipelineREADME

Resource Type: Resource, software resource

A pipeline for assembling DNA sequence data generated on the Illumina sequencing platform.

  • From Current Category

Cite this (AAA Service Laboratory, RRID:SCR_012418)

URL: http://www.scienceexchange.com/facilities/aaa-service-laboratory-inc

Resource Type: Resource, service resource, commercial organization, core facility, access service resource

ABRF member.

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