URL: http://deconseq.sourceforge.net/
Proper Citation: DeconSeq (RRID:SCR_007006)
Description: Software tool to automatically detect and efficiently remove sequence contaminations from genomic and metagenomic datasets. It is easily configurable and provides a user-friendly interface. The user can upload FASTA or FASTQ files and select the databases used for contamination screening, including seven human genomes, bacterial genomes, and viral genomes. The user can set the thresholds interactivly and see the results directly using the functionality of the graphical interface. The results can be downloaded in joined or separated files in different formats. The coverage-identity plots provide additional information that can guide the selections of the thresholds using color coded points and connecting lines.
Synonyms: DECONtamination of SEQuence data, decontamination of sequence data
Resource Type: data analysis software, software application, sequence analysis software, data processing software, software resource
Keywords: microbiome, sequence analysis, genomic, metagenomic, datasets, contamination, decontamination, FASEB list
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