URL: http://watson.nci.nih.gov/bioc_mirror/packages/2.11/bioc/html/EDASeq.html
Proper Citation: EDASeq (RRID:SCR_006751)
Description: Software for numerical and graphical summaries of RNA-Seq read data. Within-lane normalization procedures to adjust for GC-content effect (or other gene-level effects) on read counts: loess robust local regression, global-scaling, and full-quantile normalization (Risso et al., 2011). Between-lane normalization procedures to adjust for distributional differences between lanes (e.g., sequencing depth): global-scaling and full-quantile normalization (Bullard et al., 2010).
Abbreviations: EDASeq
Synonyms: EDASeq: Exploratory Data Analysis and Normalization for RNA-Seq data
Resource Type: software resource
Keywords: data analysis, normalization, rna-seq
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