URL: http://www.pathwaycommons.org/
Proper Citation: cPath (RRID:SCR_001749)
Description: Data management software that runs the Pathway Commons web service. It makes it easy to aggregate custom pathway data sets available in standard exchange formats from multiple databases, present pathway data to biologists via a customizable web interface, and export pathway data via a web service to third-party software, such as Cytoscape, for visualization and analysis. cPath is software only, and does not include new pathway information. Main features: * Import pipeline capable of aggregating pathway and interaction data sets from multiple sources, including: MINT, IntAct, HPRD, DIP, BioCyc, KEGG, PUMA2 and Reactome. * Import/Export support for the Proteomics Standards Initiative Molecular Interaction (PSI-MI) and the Biological Pathways Exchange (BioPAX) XML formats. * Data visualization and analysis via Cytoscape. * Simple HTTP URL based XML web service. * Complete software is freely available for local install. Easy to install and administer. * Partly funded by the U.S. National Cancer Institute, via the Cancer Biomedical Informatics Grid (caBIG) and aims to meet silver-level requirements for software interoperability and data exchange.
Abbreviations: cPath
Synonyms: cPath2
Resource Type: software resource, software application, data management software
Defining Citation: PMID:17101041
Keywords: exchange, molecular, pathway, proteomics, storing, visualization, visualizing, biological pathway, metabolic pathway, protein interaction network, signal transduction pathway, gene regulatory network, biological process, exchange format, FASEB list
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