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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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HomoloGene Resource Report Resource Website 100+ mentions |
HomoloGene (RRID:SCR_002924) | HomoloGene | data or information resource, service resource, database | Automated system for constructing putative homology groups from complete gene sets of wide range of eukaryotic species. Databse that provides system for automatic detection of homologs, including paralogs and orthologs, among annotated genes of sequenced eukaryotic genomes. HomoloGene processing uses proteins from input organisms to compare and sequence homologs, mapping back to corresponding DNA sequences. Reports include homology and phenotype information drawn from Online Mendelian Inheritance in Man, Mouse Genome Informatics, Zebrafish Information Network, Saccharomyces Genome Database and FlyBase. | homolog, paralog, ortholog, genome, gene, protein, protein alignment, phenotype, conserved domain, homology, amino acid sequence, cell, dna, gold standard |
is used by: NIF Data Federation is used by: Nowomics is used by: MitoMiner is listed by: OMICtools is listed by: re3data.org is related to: OMIM is related to: Mouse Genome Informatics (MGI) is related to: Zebrafish Information Network (ZFIN) is related to: SGD is related to: FlyBase is related to: ProbeMatchDB 2.0 is related to: Biomine is related to: Consensus CDS has parent organization: NCBI |
PMID:23193264 | Free, Freely availalbe | nif-0000-02975, r3d100010781, OMICS_01544 | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=homologene, https://doi.org/10.17616/R3889F | SCR_002924 | NCBI HomoloGene | 2026-07-28 09:40:42 | 437 | |||||
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NCBI Protein Database Resource Report Resource Website 500+ mentions |
NCBI Protein Database (RRID:SCR_003257) | NCBI_GP, NCBI Protein, NCBI GP | data or information resource, database | Databases of protein sequences and 3D structures of proteins. Collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. | amino acid sequence, nucleotide, dna sequence, protein, sequence, sequence data, structure, function, dna, nucleotide sequence, genomics, protein binding, gold standard |
is used by: NIF Data Federation is listed by: re3data.org is related to: AmiGO is related to: GenBank is related to: RefSeq is related to: TPA is related to: UniProtKB is related to: Protein Information Resource is related to: Protein Research Foundation is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: BioExtract is related to: DIG IT - Database of Immunoglobulins and Integrated Tools has parent organization: NCBI |
Free, Freely available | SCR_017486, r3d100011331, nif-0000-03178 | http://www.ncbi.nlm.nih.gov/sites/entrez?db=protein, https://doi.org/10.17616/R3JH0X | SCR_003257 | Entrez Protein, Protein Database, NCBI Protein Database, Protein sequence database, Entrez Protein Database | 2026-07-28 09:40:40 | 963 | ||||||
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Influenza Virus Resource Resource Report Resource Website 50+ mentions |
Influenza Virus Resource (RRID:SCR_002984) | Influenza Virus Resource | data or information resource, database | Database of data obtained from the NIAID Influenza Genome Sequencing Project as well as from GenBank, combined with tools for flu sequence analysis and annotation. In addition, it provides links to other resources that contain flu sequences, publications and general information about flu viruses. Users can search the Flu database, build queries, retrieve sequences, and apply analysis tools. This includes selecting influenza sequences by virus, subtype, host, and other criteria, finding complete genome sets, aligning sequence and others in the database (up to 1000 sequences), viewing clustering and phylogenetic trees, BLAST searching a flu sequence against the database, and more. | genomics, genome, flu, variation, annotation, blast, cluster, phylogenetic tree, align, data analysis service |
is listed by: re3data.org is related to: GenBank is related to: Virus Variation has parent organization: NCBI |
Influenza virus | PMID:17942553 | Free, Available for download, Freely available | nif-0000-03023, r3d100011004 | https://doi.org/10.17616/R3S61C | SCR_002984 | NCBI Influenza Virus Resource | 2026-07-28 09:40:35 | 83 | ||||
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NCBI Structure Resource Report Resource Website 10+ mentions |
NCBI Structure (RRID:SCR_004218) | NCBI Structure | data or information resource, database | Database of three-dimensional structures of macromolecules that allows the user to retrieve structures for specific molecule types as well as structures for genes and proteins of interest. Three main databases comprise Structure-The Molecular Modeling Database; Conserved Domains and Protein Classification; and the BioSystems Database. Structure also links to the PubChem databases to connect biological activity data to the macromolecular structures. Users can locate structural templates for proteins and interactively view structures and sequence data to closely examine sequence-structure relationships. * Macromolecular structures: The three-dimensional structures of biomolecules provide a wealth of information on their biological function and evolutionary relationships. The Molecular Modeling Database (MMDB), as part of the Entrez system, facilitates access to structure data by connecting them with associated literature, protein and nucleic acid sequences, chemicals, biomolecular interactions, and more. It is possible, for example, to find 3D structures for homologs of a protein of interest by following the Related Structure link in an Entrez Protein sequence record. * Conserved domains and protein classification: Conserved domains are functional units within a protein that act as building blocks in molecular evolution and recombine in various arrangements to make proteins with different functions. The Conserved Domain Database (CDD) brings together several collections of multiple sequence alignments representing conserved domains, in addition to NCBI-curated domains that use 3D-structure information explicitly to define domain boundaries and provide insights into sequence/structure/function relationships. * Small molecules and their biological activity: The PubChem project provides information on the biological activities of small molecules and is a component of NIH''''s Molecular Libraries Roadmap Initiative. PubChem includes three databases: PCSubstance, PCBioAssay, and PCCompound. The PubChem data are linked to other data types (illustrated example) in the Entrez system, making it possible, for example, to retrieve information about a compound and then Link to its biological activity data, retrieve 3D protein structures bound to the compound and interactively view their active sites, and find biosystems that include the compound as a component. * Biological Systems: A biosystem, or biological system, is a group of molecules that interact directly or indirectly, where the grouping is relevant to the characterization of living matter. The NCBI BioSystems Database provides centralized access to biological pathways from several source databases and connects the biosystem records with associated literature, molecular, and chemical data throughout the Entrez system. BioSystem records list and categorize components (illustrated example), such as the genes, proteins, and small molecules involved in a biological system. The companion FLink icon FLink tool, in turn, allows you to input a list of proteins, genes, or small molecules and retrieve a ranked list of biosystems. | macromolecule, conserved domain, protein classification, protein, small molecule, biological activity, molecule, biosystem, biological system, structure, gene, alignment, biomolecule, interaction, function, evolution, 3d spatial image, visualization, gold standard |
is listed by: re3data.org is related to: PubChem is related to: NCBI BioSystems Database is related to: Conserved Domain Database is related to: Molecular Modeling DataBase is related to: CBLAST is related to: NCBI Structure: Cn3D is related to: IBIS: Inferred Biomolecular Interactions Server is related to: Vector Alignment Search Tool is related to: PubMed has parent organization: NCBI |
Free, Public, Acknowledgement requested | nlx_23947, r3d100010927 | http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure, https://doi.org/10.17616/R3PP7J | SCR_004218 | 2026-07-28 09:40:56 | 25 | |||||||
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FAIRsharing Resource Report Resource Website 50+ mentions |
FAIRsharing (RRID:SCR_004177) | data or information resource, database | Web-based, searchable portal of three interlinked registries, containing both in-house and crowdsourced manually curated descriptions of standards, databases and data policies, combined with integrated view across all three types of resource. By registering your resource on FAIRsharing, you gain credit for your work, increase its visibility outside of your direct domain, reduce potential for unnecessary reinvention and proliferation of standards and databases. | Metadata standard, ontology, data sharing, data policy, data standard |
is used by: Integrated Datasets lists: Brain Imaging Data Structure (BIDs) lists: EBRAINS lists: Code Ocean lists: Distributed Archives for Neurophysiology Data Integration lists: CaltechDATA lists: DataONE lists: GBIF - Global Biodiversity Information Facility lists: Incorporated Research Institutions for Seismology lists: Mendeley Data lists: Open Science Framework lists: MorphoBank lists: PhysioNet lists: GigaDB lists: INPTDAT lists: OpenNeuro lists: Cancer Imaging Archive (TCIA) lists: Qualitative Data Repository lists: UK Data Archive lists: Dryad Digital Repository lists: BOLD lists: ZENODO lists: Vivli lists: FigShare lists: Influenza Research Database (IRD) lists: Cambridge Structural Data Base lists: National Snow and Ice Data Center lists: Virus Pathogen Resource (ViPR) lists: 4TU.ResearchData lists: Australian Data Archive lists: Atlas of Living Australia lists: Australian Ocean Data Network lists: Arch lists: Bolin Centre Database lists: B2SHARE Eudat lists: Connectome Workbench is listed by: FORCE11 is listed by: re3data.org is related to: bioDBcore is related to: Standards-based Infrastructure with Distributed Resources is related to: Genomic Standards Consortium is related to: ELIXIR Tools and Data Services Registry is related to: NCI Imaging Data Commons is related to: Cancer Research Data Commons is related to: SciLifeLab Data Platform is related to: NiPoppy has parent organization: University of Oxford; Oxford; United Kingdom is parent organization of: Minimum Information for Biological and Biomedical Investigations is parent organization of: FAIRSharing Catalogue of Standards |
Free, freely available | r3d100011250, nlx_143602, SCR_017615 | http://www.force11.org/node/4701, https://fairsharing.org/, https://doi.org/10.17616/R3C621 | http://www.biosharing.org/ | SCR_004177 | BioSharing | 2026-07-28 09:40:55 | 50 | ||||||
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UniGene Resource Report Resource Website 1000+ mentions |
UniGene (RRID:SCR_004405) | UniGene | data or information resource, service resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. Web tool for an organized view of the transcriptome. Collection of the computationally identified transcripts from the same locus. Information on protein similarities, gene expression, cDNA clones, and genomic location. System for automatically partitioning GenBank sequences into a non redundant set of gene oriented clusters. | colleciton, data, information, organized, view, transcriptome, locus, protein, similarity, gene, expression, |
is used by: Rank Rank Hypergeometric Overlap is listed by: OMICtools is listed by: re3data.org is related to: ProbeMatchDB 2.0 is related to: Bgee: dataBase for Gene Expression Evolution is related to: GeneSpeed- A Database of Unigene Domain Organization has parent organization: NCBI works with: Digital Differential Display (DDD) |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_41571, OMICS_01663, r3d100010774 | http://www.ncbi.nlm.nih.gov/sites/entrez?db=unigene, https://doi.org/10.17616/R35G7T | SCR_004405 | NCBI UniGene, Organized View of the Transcriptome, UniGene | 2026-07-28 09:41:01 | 1153 | ||||||
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B2SHARE Eudat Resource Report Resource Website 1+ mentions |
B2SHARE Eudat (RRID:SCR_023135) | data repository, service resource, storage service resource | Used to store, publish and share research data in FAIR way. Facilitates research data storage, guarantees long-term persistence of data and allows data, results or ideas to be shared worldwide.Supports community domains with metadata extensions, access rules and publishing workflows. |
is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing |
Free, Freely available | r3d100011394, DOI:10.25504/FAIRsharing.da9307, DOI:10.17616/R3VK72, DOI:10.3473 | https://doi.org/10.3473, https://dx.doi.org/10.3473, http://doi.org/10.17616/R3VK72, https://fairsharing.org/10.25504/FAIRsharing.da9307, https://doi.org/10.17616/R3VK72 | SCR_023135 | B2SHARE | 2026-07-28 09:45:51 | 1 | ||||||||
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Polar Data Catalogue Resource Report Resource Website 1+ mentions |
Polar Data Catalogue (RRID:SCR_023131) | data repository, service resource, storage service resource | Repository of metadata and data that describes and provides access to diverse data sets generated by Arctic and Antarctic researchers. The metadata records follow ISO 19115 and Federal Geographic Data Committee (FGDC) standard formats to provide exchange with other data centres. The records cover a wide range of disciplines from natural sciences and policy, to health and social sciences. The PDC Geospatial Search tool is available to the public and researchers alike and allows searching data using a mapping interface and other parameters. | Arctic and Antarctic researcher data, Federal Geographic Data Committee standard format, |
is listed by: DataCite is listed by: re3data.org |
Free, Freely available | DOI:10.17616/R3QK86, r3d100010953, DOI:10.5884 | https://doi.org/10.5884, https://dx.doi.org/10.5884, http://doi.org/10.17616/R3QK86, https://doi.org/10.17616/R3QK86 | SCR_023131 | ArcticNet | 2026-07-28 09:45:53 | 1 | |||||||
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Brown Digital Repository Resource Report Resource Website |
Brown Digital Repository (RRID:SCR_023144) | data repository, service resource, storage service resource | Collection contains open and publicly funded data sets created by Brown University faculty and student researchers. Increasingly, publishers, and funders are requiring that protocols, data sets, metadata, and code underlying published research be retained and preserved, their locations cited within publications, and shared with other researchers and the public. The deposits here endeavor to be in line with FAIR Principles (Findable, Accessible, Interoperable, Reusable). If you would like to deposit data set into this collection for the purposes of citation/linking within publication and public dissemination, then please log in, zip up and upload your file, and request digital object identifier (DOI) for your data citation. |
is listed by: DataCite is listed by: re3data.org |
Free, Freely available | DOI:10.17616/R3193B, r3d100011654, DOI:10.7301 | https://doi.org/10.7301, https://dx.doi.org/10.7301, http://doi.org/10.17616/R3193B, https://doi.org/10.17616/R3193B | SCR_023144 | Brown Digital Repository | 2026-07-28 09:45:51 | 0 | ||||||||
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BioHeritage National Science Challenge Data Repository Resource Report Resource Website |
BioHeritage National Science Challenge Data Repository (RRID:SCR_023141) | data repository, service resource, storage service resource | Data catalogue and repository for New Zealand's Biological Heritage National Science Challenge. |
is listed by: DataCite is listed by: re3data.org |
Free, Freely available | DOI:10.17616/R31NJN01, DOI:10.34721, r3d100013617 | https://doi.org/10.34721, https://dx.doi.org/10.34721, http://doi.org/10.17616/R31NJN01, https://doi.org/10.17616/R31NJN01 | SCR_023141 | BioHeritage National Science Challenge Data Repository | 2026-07-28 09:45:51 | 0 | ||||||||
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EOL - Encyclopedia of Life Resource Report Resource Website 100+ mentions |
EOL - Encyclopedia of Life (RRID:SCR_005905) | EOL | data or information resource, database, portal | Database that gathers, generates, and shares taxa, images, videos, and sounds to freely provide knowledge about life on earth to increase awareness and understanding of living nature. Free EOL memberships are ranked so members have greater authority and editorial abilities based on their level of expertise. | life, encyclopedia, environmental sciences, ecology, ecological survey, life sciences, specie, species diversity, diversity, taxon, image, video, audio, FASEB list |
is listed by: re3data.org is related to: Pensoft is related to: Biodiversity Heritage Library |
John D. and Catherine T. MacArthur Foundation ; Alfred P. Sloan Foundation |
PMID:24891832 | Creative Commons License, Acknowledgement requested, Note that a single page may be made up of many different data elements, Each covered by a different license, Http://eol.org/info/copyright_and_linking#using_content | r3d100010229, nlx_149476 | https://doi.org/10.17616/R35S3D | SCR_005905 | Encyclopedia of Life | 2026-07-28 09:41:23 | 138 | ||||
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Data and Specimen Hub (NICHD DASH) Resource Report Resource Website 50+ mentions |
Data and Specimen Hub (NICHD DASH) (RRID:SCR_016314) | NICHD DASH, DASH | service resource, data repository, biospecimen repository, material storage repository, storage service resource | Repository to store and access de-identified data from NICHD funded research studies for purposes of secondary research use. It serves as mechanism for NICHD-funded extramural and intramural investigators to share research data from studies in accordance with NIH Data Sharing Policy and NIH Genomic Data Sharing Policy. |
is used by: NIH Heal Project is recommended by: National Library of Medicine is listed by: re3data.org |
NICHD | Restricted | r3d100012915 | https://doi.org/10.17616/R31NJMGJ | SCR_016314 | NICHD Data and Specimen Hub, Data and Specimen Hub | 2026-07-28 09:44:16 | 73 | ||||||
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Metabolomics Workbench Resource Report Resource Website 500+ mentions |
Metabolomics Workbench (RRID:SCR_013794) | MetWB | service resource, data or information resource, storage service resource, data repository | Repository for metabolomics data and metadata which provides analysis tools and access to various resources. NIH grantees may upload data and general users can search metabolomics database. Provides protocols for sample preparation and analysis, information about NIH Metabolomics Program, data sharing guidelines, funding opportunities, services offered by its Regional Comprehensive Metabolomics Resource Cores (RCMRC)s, and training workshops. | repository, metabolomics, database, funding, training, protocol, bio.tools, FASEB list, DRKB |
is used by: NIH Heal Project is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases lists: NIH Metabolomics program lists: MetaCore lists: JMP lists: STATISTICA lists: Spotfire lists: Coordination of Standards in Metabolomics lists: MetaboLights lists: MetabolomeXchange lists: Metabolomics Society lists: Birmingham Metabolite Library lists: Glycan Mass Spectral Database (GMDB) lists: Mass Spectral Library lists: mzCloud lists: MetabolomeExpress lists: Spectral Database System (SDBS) lists: CTSgetR lists: Hierarchical Clustering lists: imDEV lists: Linear Discriminant Analysis lists: Principal Components Analysis lists: mwtabR lists: 3Omics lists: ACD/ NMR Processor lists: NIST Mass Spectrometry Data Center lists: Chemical Translation Service lists: Chenomx NMR Suite lists: DeviumWeb lists: MBRole lists: MetaMapR lists: MetaP lists: Metscape lists: SIMCA lists: TeachingDemos is listed by: NIH Data Sharing Repositories is listed by: bio.tools is listed by: Debian is listed by: re3data.org is listed by: DataCite has parent organization: University of California; California; USA is parent organization of: Metabolomics Workbench Metabolite Database |
NIH ; NIDDK DK141185 |
Free, Freely available | biotools:Metabolomics_Workbench, r3d100012314 | https://bio.tools/Metabolomics_Workbench, https://api.datacite.org/dois?prefix=10.21228 | SCR_013794 | Metabolomics Workbench, MetWB, UCSD Metabolomics Workbench, Metabolomics Workbench (MetWB) | 2026-07-28 09:43:38 | 534 | |||||
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Aperta Turkey Open Archive Resource Report Resource Website 1+ mentions |
Aperta Turkey Open Archive (RRID:SCR_023128) | data repository, service resource, storage service resource | Aperta is the name of the Turkish Open Archive.You can upload your scientific studies within the scope of Aperta to this portal or you can easily access the uploaded studies. |
is listed by: DataCite is listed by: re3data.org |
Free, Freely available | DOI:10.48623, DOI:10.17616/r31njmv8, r3d100013444 | https://doi.org/10.48623, https://dx.doi.org/10.48623, https://doi.org/10.17616/r31njmv8, https://doi.org/10.17616/R31NJMV8 | SCR_023128 | Aperta Turkey Open Archive | 2026-07-28 09:45:53 | 2 | ||||||||
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UK Data Archive Resource Report Resource Website 50+ mentions |
UK Data Archive (RRID:SCR_014708) | data or information resource, organization portal, portal | Organization which acquires, curates, and provides access to a collection of digital data in the social sciences and humanities in the United Kingdom. | data archive, digital data, social science, humanities, curator |
is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing |
ESRC ; JISC ; University of Essex |
grid.438826.3, DOI:10.25504/FAIRsharing.qtm44s, Wikidata: Q17039301, ISNI: 0000 0001 0377 8000, DOI:10.5255, DOI:10.17616/R3088K | https://ror.org/03fknw408, https://doi.org/10.17616/R3088K, https://doi.org/10.17616/r3088k, https://doi.org/10.5255/, https://dx.doi.org/10.5255/, https://fairsharing.org/10.25504/FAIRsharing.qtm44s | SCR_014708 | 2026-07-28 09:43:34 | 88 | ||||||||
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myExperiment Resource Report Resource Website 10+ mentions |
myExperiment (RRID:SCR_001795) | myExperiment | software application, service resource, workflow software, community building portal, data or information resource, data repository, database, software resource, data processing software, storage service resource, portal | Community repository and virtual research environment where scientists can safely publish their workflows and experiment plans, share them with groups and find and use those of others. Workflows, other digital objects and collections (called Packs) can be swapped, sorted and searched. It supports Linked data, has a SPARQL Endpoint and REST API and is based on an open source Ruby on Rails codebase. Scientific workflows in various formats can be uploaded. Specific support is provided for Taverna workflows for which the system displays relevant metadata, components and visual previews, that are retrieved directly from workflow files. Version history for workflows is collected. This feature allows the contributor to keep previous versions of the workflow available, when the latest one is uploaded. This brings additional benefit for the users by allowing them to view the development stages of the workflow towards its latest implementation. | workflow, pipeline, platform, component, data sharing, publish, digital object, experimental method, workflow management, virtual research environment, collaborative computing, taverna workflow workbench, bioinformatics, web service, bio.tools |
is listed by: FORCE11 is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: Taverna is related to: Workflow4Ever is related to: Biocatalogue - The Life Science Web Services Registry has parent organization: University of Southampton; Southampton; United Kingdom has parent organization: University of Manchester; Manchester; United Kingdom has parent organization: University of Oxford; Oxford; United Kingdom |
JISC ; Microsoft Technical Computing Initiative ; EPSRC |
PMID:20501605 | Free, Freely available | nif-0000-10309, r3d100010473, biotools:myexperiment | https://www.force11.org/node/4638, https://bio.tools/myexperiment | SCR_001795 | my experiment | 2026-07-28 09:40:25 | 23 | ||||
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NeuroMorpho.Org Resource Report Resource Website 50+ mentions |
NeuroMorpho.Org (RRID:SCR_002145) | service resource, data or information resource, data repository, database, storage service resource | Centrally curated inventory of digitally reconstructed neurons associated with peer-reviewed publications that contains some of the most complete axonal arborizations digitally available in the community. Each neuron is represented by a unique identifier, general information (metadata), the original and standardized ASCII files of the digital morphological reconstruction, and a set of morphometric features. It contains contributions from over 100 laboratories worldwide and is continuously updated as new morphological reconstructions are collected, published, and shared. Users may browse by species, brain region, cell type or lab name. Users can also download morphological reconstructions for research and analysis. Deposition and distribution of reconstruction files ultimately prevents data loss. Centralized curation and annotation aims at minimizing the effort required by data owners while ensuring a unified format. It also provides a one-stop entry point for all available reconstructions, thus maximizing data visibility and impact. | neuron, morphological reconstruction, morphometry, axonal arborization, digital neuronal reconstruction, neuronal reconstruction, neuronal morphology, data sharing, annotation, brain region, neocortex, digital reconstruction, neurogenetics, neurochemistry, neuroscience, neurology, FASEB list |
is used by: NIF Data Federation is used by: BICCN is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: DONE: Detection of Outlier NEurons is related to: NIF Literature is related to: Computational Neurobiology and Imaging Center is related to: Integrated Manually Extracted Annotation is related to: xyz2swc is related to: Allen Institute for Brain Science has parent organization: George Mason University; Virginia; USA is parent organization of: NeuroMorpho.Org species ontology is parent organization of: NeuroMorpho.Org species ontology old |
NINDS R01 NS39600; MURI ONR N000141010198 |
PMID:17728438 PMID:16552417 PMID:18949582 |
Free, Available for download, Freely available | nif-0000-00006, r3d100010107 | http://www.nitrc.org/projects/neuromorpho_org, http://neuromorpho.org/, https://doi.org/10.17616/R3WW2K | SCR_002145 | Neuro Morpho, NeuroMorpho.org, NeuroMorpho | 2026-07-28 09:40:34 | 96 | |||||
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Addgene Resource Report Resource Website 10000+ mentions |
Addgene (RRID:SCR_002037) | service resource, data or information resource, organization portal, material storage repository, storage service resource, portal | Non-profit plasmid repository dedicated to helping scientists around the world share high-quality plasmids. Facilitates archiving and distributing DNA-based research reagents and associated data to scientists worldwide. Repository contains over 65,000 plasmids, including special collections on CRISPR, fluorescent proteins, and ready-to-use viral preparations. There is no cost for scientists to deposit plasmids, which saves time and money associated with shipping plasmids themselves. All plasmids are fully sequenced for validation and sequencing data is openly available. We handle the appropriate Material Transfer Agreements (MTA) with institutions, facilitating open exchange and offering intellectual property and liability protection for depositing scientists. Furthermore, we curate free educational resources for the scientific community including a blog, eBooks, video protocols, and detailed molecular biology resources. | RIN, Resource Information Network, plasmid, molecular biology, sequence alignment, repository, bio.tools, FASEB list, RRID Community Authority |
uses: GenomeCompiler is used by: NIF Data Federation is used by: NIDDK Information Network (dkNET) is used by: Structural Genomics Consortium is used by: ZCre is listed by: One Mind Biospecimen Bank Listing is listed by: DataCite is listed by: re3data.org is listed by: bio.tools is listed by: Debian is listed by: Resource Information Network is related to: zfishbook is related to: GenomeCompiler is related to: Phoenix is related to: Integrated Manually Extracted Annotation is related to: Genetic Tools Atlas is parent organization of: Vector Database |
Fees collected from plasmid sales support operation of the repository | DOI:10.1093/nar/gku893 | Free (deposit of plasmids), Limited (Some available to academic and non-profits, For-profit entities, Commercial license), Material Transfer Agreement, Non-commercial, Acknowledgement required, Copyrighted, For informational purposes only, Commercial with written consent, The community can contribute to this resource | ISNI: 0000 0004 5912 0787, Wikidata: Q4681063, grid.482682.2, biotools:Addgene, nif-0000-11872 | https://ror.org/01nn1pw54, https://bio.tools/Addgene | SCR_002037 | Addgene Repository, Addgene Plasmid Database | 2026-07-28 09:40:19 | 50586 | |||||
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NIDA Data Share Resource Report Resource Website 10+ mentions |
NIDA Data Share (RRID:SCR_002002) | service resource, data or information resource, data repository, catalog, database, storage service resource | Website which allows data from completed clinical trials to be distributed to investigators and public. Researchers can download de-identified data from completed NIDA clinical trial studies to conduct analyses that improve quality of drug abuse treatment. Incorporates data from Division of Therapeutics and Medical Consequences and Center for Clinical Trials Network. | drug of abuse, clinical, data, data sharing, human, clinical trial, experimental protocol, addiction, drug, addiction, data set, substance abuse |
is used by: NIF Data Federation is used by: Integrated Datasets is used by: NIH Heal Project is recommended by: National Library of Medicine is recommended by: BRAIN Initiative is listed by: re3data.org is related to: NIDA Networking Project: Facilitating information exchange and research collaboration is related to: Integrated Manually Extracted Annotation has parent organization: National Drug Abuse Treatment Clinical Trials Network |
NIDA | Restricted | nif-0000-21981 | http://www.ctndatashare.org/ | SCR_002002 | NIDA Clinical Trials Data Share, CTN database, CTN Data Share, NIDA CTN Data Share | 2026-07-28 09:40:19 | 18 | ||||||
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Marine Geoscience Data System Resource Report Resource Website 10+ mentions |
Marine Geoscience Data System (RRID:SCR_002164) | MGDS | data repository, service resource, storage service resource | Repository providing free access to marine geophysical data (e.g. bathymetry, seismic data, magnetics, gravity, images) and related land-based data from NSF-funded research conducted throughout the global oceans. Data Portals include GeoPRISMS, MARGINS, Ridge 2000, Antarctic and Southern Ocean Data Synthesis, the Global Multi-Resolution Topography Synthesis, and Seismic Reflection Field Data Portal. Primary data types served are multibeam bathymetric data from the ocean floor, seismic reflection data imaging below the seafloor, and multi-disciplinary ship based data from the Southern Ocean. Other holdings include deep-sea photographic transects, and ultra-high resolution bathymetry, temperature probe data, biological species compilations, MAPR and CTD data. Derived data products and sets include microseismicity catalogs, images, visualization scenes, magnetic and gravity compilations, grids of seismic layer thickness, velocity models, GIS project files, and 3D visualizations. Tools to discover, explore, and visualize data are available. They deliver catalogs, maps, and data through standard programmatic interfaces. GeoMapApp, a standalone data visualization and analysis tool, permits dynamic data exploration from a map interface and the capability to generate and download custom grids and maps and other data. Through GeoMapApp, users can access data hosted at the MGDS, at other data repositories, and import their own data sets. Global Multi-Resolution Topography (GMRT) is a continuously-updated compilation of seafloor bathymetry integrated with global land topography. It can be used to create maps and grids and it can be accessed through several standard programmatic interfaces including GeoMapApp and Google Earth. The GMRT compilation can also be explored in 3D using Virtual Ocean. The MGDS MediaBank contains high quality images, illustrations, animations and video clips that are organized into galleries. Media can be sorted by category, and keyword and map-based search options are provided. Each item in the MediaBank is accompanied by metadata that provides access to a cruise catalog and data repository. | observation, solid earth, ocean, earth, polar sciences, marine, geophysical, bathymetry, seismic, magnetics, gravity, image, geology, bathymetric map, topographic map, mid-ocean ridge, submarine topography, continental margin, continental shelf, continental slope, expedition, catalog, web service, dynamic map |
uses: DataCite is listed by: re3data.org is listed by: CINERGI is related to: PetDB is related to: GeoMapApp has parent organization: Integrated Earth Data Applications is parent organization of: Antarctic and Southern Ocean Data Portal is parent organization of: Academic Seismic Portal at LDEO is parent organization of: U.S. Antarctic Program Data Coordination Center |
NSF | Free, Freely available | r3d100010273, nlx_154713, DOI:10.26022/ | https://doi.org/10.26022/, https://dx.doi.org/10.26022/, https://doi.org/10.17616/R38C83 | SCR_002164 | 2026-07-28 09:40:21 | 16 |
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