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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
D-Track Resource Report Resource Website |
D-Track (RRID:SCR_021394) | software toolkit, software resource | Software package to track object in 3D based on 3D schematics of scene.Semi automatic 3D video tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins. | Object tracking, track aquatic animals, dolphin tracker, 3D video tracking, analyse movements, OpenBehavior |
is listed by: OpenBehavior is related to: D-Track project |
DOI:10.1371/journal.pone.0201614 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/d-track/ | SCR_021394 | 2026-07-28 09:45:19 | 0 | ||||||||
|
AutoPilot Resource Report Resource Website 1+ mentions |
AutoPilot (RRID:SCR_021518) | software toolkit, software resource | Software tool as open source Python framework for behavioral neuroscience that distributes experiments over networked swarms of Raspberry Pis. Toolkit of flexible modules to design experiments without rigid programming and API limitations. | Running behavioral experiments, automating behavioral experiments, Raspberry Pis, design experiments modules, OpenBehavior |
is listed by: OpenBehavior is related to: AutoPilot project |
DOI:10.1101/807693 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/autopilot/ | SCR_021518 | Autopilot | 2026-07-28 09:45:24 | 1 | |||||||
|
DeepPoseKit Resource Report Resource Website 1+ mentions |
DeepPoseKit (RRID:SCR_021405) | software toolkit, software resource | Software toolkit with high level API for 2D pose estimation of user defined keypoints using deep learning.Written in Python and built using Tensorflow and Keras.Method for pose estimation developed by behavioral scientists at the Max Planck Institute of Animal Behavior. | 2D pose estimation, animal pose estimation, animal behavior, DeepLabCut, Leap, OpenBehavior |
is listed by: OpenBehavior is related to: DeepPoseKit project |
DOI:10.7554/elife.47994 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/deepposekit/ | SCR_021405 | 2026-07-28 09:45:19 | 2 | ||||||||
|
DeepSqueak Resource Report Resource Website 10+ mentions |
DeepSqueak (RRID:SCR_021524) | software toolkit, software resource | Software MATLAB package for high throughput ultrasonic vocalizations detection, classification, and analysis. | data quantification, ultrasonic vocalizations quantification, ultrasonic vocalization, OpenBehavior |
is listed by: OpenBehavior is related to: DeepSqueak project |
DOI:10.1038/s41386-018-0303-6 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/deepsqueak/ | SCR_021524 | 2026-07-28 09:45:24 | 10 | ||||||||
|
ArControl Resource Report Resource Website 1+ mentions |
ArControl (RRID:SCR_021605) | software application, standalone software, software resource | Software tool as Arduino UNO/Mega based, visual programming and real-time behavioral platform for neuroscience. It can run Go/No-Go, 2AFPC and Optogenetic stimulation tasks. Stand alone and intuitive Gaphical User Interface application.Part of ArControl system. | visual programming, real-time behavioral platform, control devices, deliver stimulation, monitor behavioral response, OpenBehavior |
is listed by: OpenBehavior is related to: ArControl project |
DOI:10.3389/fnbeh.2017.00244 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/arcontrol/ | SCR_021605 | 2026-07-28 09:45:18 | 1 | ||||||||
|
Pi-based Remote Acquisition Technology for Motion Capture Resource Report Resource Website 1+ mentions |
Pi-based Remote Acquisition Technology for Motion Capture (RRID:SCR_022327) | PiRATeMC | software toolkit, software resource | Software data management pipeline for camera synchronization and combined data directories. | OpenBehavior, camera synchronization, combined data directories, data management |
is listed by: OpenBehavior is related to: Pi-based Remote Acquisition Technology for Motion Capture project |
DOI:10.1101/2021.07.23.453577 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/piratemc/ | SCR_022327 | 2026-07-28 09:45:29 | 1 | |||||||
|
Anipose Resource Report Resource Website 1+ mentions |
Anipose (RRID:SCR_023041) | software toolkit, software resource | Software package for 3D pose estimation. Uses DeepLabCut for 2D tracking and uses triangulation methods to project pose estimations into three dimensions.Toolkit for robust markerless 3D pose estimation. | OpenBehavior, 3D pose estimation, project pose estimations into three dimensions, markerless 3D pose estimation |
uses: DeepLabCut is listed by: OpenBehavior is related to: DeepLabCut Project |
NINDS F31NS115477; NINDS R00 NS088193; NINDS DP2NS105555; NINDS R01NS111479; NINDS U19NS112959; Searle Scholars Program ; Pew Charitable Trusts ; McKnight Foundation ; Sloan Research Fellowship ; Washington Research Foundation ; NINDS R01NS102333; NINDS U19NS104655; New York Stem Cell Foundation |
PMID:34592148 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=Anipose | SCR_023041 | 2026-07-28 09:45:51 | 4 | |||||||
|
Mouse Behavioral Analysis Toolbox Resource Report Resource Website 1+ mentions |
Mouse Behavioral Analysis Toolbox (RRID:SCR_023291) | MouBeAT | software toolkit, software resource | Software package to analyze different behavioral tests in rodents semi-automatically. These tests include Open Field (OF), Elevated Plus Maze (EPM), Y-maze (YM) test and Morris Water Maze (MWM). | OpenBehavior, behavioral tests, behavioral tests analysis, tests in rodents |
uses: ImageJ is listed by: OpenBehavior |
Ministry of Science and Innovation ; Spain ; European Regional Development Fund |
PMID:30245618 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/moubeat/ | SCR_023291 | 2026-07-28 09:45:51 | 1 | ||||||
|
Rtrack Resource Report Resource Website |
Rtrack (RRID:SCR_023025) | software toolkit, software resource | Software R package for analysis of paths from spatial tracking experiments such as Morris water maze and calculation of goal finding strategies. Used for in depth analysis of tracking coordinates from video. | OpenBehavior, process raw spatial tracking data, calculate behavioural strategies, spatial tracking experiments, Morris water maze |
is listed by: OpenBehavior is listed by: CRAN |
DOI:10.1101/2020.02.27.967372v1.full.pdf | Free, Available for download, Freely available | https://rupertoverall.net/Rtrack/, https://edspace.american.edu/openbehavior/?s=Rtrack | SCR_023025 | 2026-07-28 09:45:45 | 0 | ||||||||
|
linear actuator Resource Report Resource Website |
linear actuator (RRID:SCR_021613) | source code, software resource | Code and model files for open source linear actuator. Part of Pearce Lab Syringe Pump system. | Pearce Lab Syringe Pump, OpenBehavior |
is listed by: OpenBehavior is related to: Pearce Lab Syringe Pump project |
DOI:10.1371/journal.pone.0107216 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/syringe-pump/ | SCR_021613 | linear-actuator | 2026-07-28 09:45:28 | 0 | |||||||
|
Rodent Operant Bucket Resource Report Resource Website |
Rodent Operant Bucket (RRID:SCR_021610) | source code, software resource | Software tool as ROBucket source code. | ROBucket, OpenBehavior |
is listed by: OpenBehavior is related to: Rodent Operant Bucket project |
DOI:10.3758/s13428-015-0603-2 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/robucket/ | SCR_021610 | 2026-07-28 09:45:18 | 0 | ||||||||
|
chendoscope Resource Report Resource Website |
chendoscope (RRID:SCR_021616) | source code, software resource | Software tool as part of CHEndoscope. Acquisition software that interfaces with CHEndoscope Ximea USB camera. This code is compatible with Linux and Windows systems. | Acquisition software, CHEndoscope Ximea USB camera, OpenBehavior |
is listed by: OpenBehavior is related to: CHEndoscope |
DOI:10.1002/cpns.51 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/chendoscope/ | SCR_021616 | 2026-07-28 09:45:18 | 0 | ||||||||
|
AutoHeadFix Resource Report Resource Website |
AutoHeadFix (RRID:SCR_021617) | source code, software resource | Software Python code for automated control of behavioural apparatus and imaging for mice in home cage environment.Part of Homecage Task Training and Mesoscale Imaging system. | Automated control, behavioural apparatus, imaging for mice, home cage environment, OpenBehavior |
is listed by: OpenBehavior is related to: Homecage Task Training and Mesoscale Imaging project |
DOI:10.7554/elife.55964 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/training-mesoscale-imaging/ | SCR_021617 | 2026-07-28 09:45:28 | 0 | ||||||||
|
craniobot Resource Report Resource Website |
craniobot (RRID:SCR_021609) | software toolkit, source code, software resource | Software tool as part of Craniobot system.Generates, sends, and receives commands to communicate with the Craniobot. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: Craniobot project |
DOI:10.1038/s41598-018-37073-w | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/craniobot/ | SCR_021609 | craniobot | 2026-07-28 09:45:14 | 0 | |||||||
|
Automated Home-Cage Functional Imaging Resource Report Resource Website |
Automated Home-Cage Functional Imaging (RRID:SCR_021607) | source code, software resource | Software tool as part of Automated Home Cage Functional Imaging system. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Home-Cage Functional Imaging project |
DOI:10.1038/ncomms11611 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/automated-home-cage-functional-imaging/ | SCR_021607 | 2026-07-28 09:45:27 | 0 | ||||||||
|
Scintillate Resource Report Resource Website |
Scintillate (RRID:SCR_021531) | source code, software resource | Open source graphical viewer for time series calcium imaging evaluation and pre-processing. | image acquisition, time series calcium imaging evaluation, calcium imaging, |
is listed by: OpenBehavior is related to: Scintillate project |
DOI:10.1016/j.jneumeth.2016.08.010 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/scintillate/ | SCR_021531 | 2026-07-28 09:45:15 | 0 | ||||||||
|
flyPAD Resource Report Resource Website 1+ mentions |
flyPAD (RRID:SCR_021522) | source code, software resource | FPGA code for running main board of flyPAD. Code written in VHDL using Quartus 2 web edition software. | FPGA code, running main board of flyPAD, VHDL, Quartus 2, OpenBehavior |
is listed by: OpenBehavior is related to: flyPAD project |
DOI:10.1038/ncomms5560 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/optopad-and-flypad/ | SCR_021522 | 2026-07-28 09:45:11 | 1 | ||||||||
|
pyOS-5 Resource Report Resource Website |
pyOS-5 (RRID:SCR_022336) | source code, software resource | Operant Box code | OpenBehavior, neurophysiology |
is listed by: OpenBehavior is related to: pyOS-5 project |
DOI:10.1038/s41598-021-01717-1 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/pyos-5/ | SCR_022336 | 2026-07-28 09:45:38 | 0 | ||||||||
|
commutator Resource Report Resource Website |
commutator (RRID:SCR_023919) | source code, software resource | Affordable commutator that is equipped with novel sensing system that improves online tracking of cable rotations without impairing the 1-photon calcium imaging via Miniscope. Commutator to allow freely moving behaviors while recording neural activity from platforms such as Miniscope V4 and OpenEphys. Used to perform calcium imaging. | OpenBehavior, sensing system, online tracking, cable rotations, freely moving behaviors, recording neural activity, calcium imaging |
is listed by: OpenBehavior is related to: Freibox |
PMID:37105720 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/freibox-and-an-open-source-commutator/ | SCR_023919 | open source commutator, commutator, Freibox commutator | 2026-07-28 09:46:01 | 0 | |||||||
|
Freibox Resource Report Resource Website |
Freibox (RRID:SCR_023918) | source code, software resource | Versatile open source behavioral system for investigating neuronal correlates of behavioral flexibility via 1-Photon Imaging in freely moving mice. Behavioral testing platform consists of FreiBox, novel low-cost Arduino behavioral setup, controlled by custom Python interface and integrates new licking sensor (strain gauge lickometer) for controlling spatial licking behavioral tasks. | Behavioral testing platform, OpenBehavior, strain gauge lickometer, licking sensor, controlling spatial licking, behavioral task, freely moving mice, |
is listed by: OpenBehavior is related to: commutator has parent organization: University of Freiburg; Baden-Wurttemberg; Germany |
PMID:37105720 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/freibox-and-an-open-source-commutator/ | SCR_023918 | 2026-07-28 09:45:59 | 0 |
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