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http://www.scienceexchange.com/facilities/university-of-massachusetts-amherst

THIS RESOURCE IS NO LONGER IN SERVICE. Documented in August 16,2024. Portal, Core facility

Proper citation: University of Massachusetts Amherst Labs and Facilities (RRID:SCR_012315) Copy   

•   Source: SciCrunch Registry

https://www.primbioresearch.com/

PrimBio Research Institute uses the Ion Torrent gene sequencing platform to provide genomic sequencing services. We are also researching and developing targeted gene panels for diseases diagnosis, prevention and treatment. Provides customized analysis.

Proper citation: PrimBio Research Institute LLC (RRID:SCR_012318) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/fountainbridge-ltd

Fountainbridge is a chemical company that helps its customers to acheive the maximum level of success when purchasing chemicals from China. Our services are provided by Fountainbridge''s expert staff based in China and Europe and through close relationship with our partners based in China. Our aim is to give our customers direct access to services and products provided from China, allowing them to reduce costs, increase security and decrease the time it takes to bring chemicals to market.

Proper citation: Fountainbridge (RRID:SCR_012317) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/firefly-bioworks-inc

Firefly BioWorks, Inc. (Cambridge, MA) provides FirePlex????????????? miRSelect, a platform for targeted microRNA profiling of diverse biological samples. The FirePlex????????????? advantage lies in its streamlined, high-throughput protocol, affordable customization, and low capital cost. FirePlex????????????? readout is performed on standard flow cytometers, and FirePlex????????????? is offered as a service for users with limited access to flow instruments.

Proper citation: Firefly BioWorks (RRID:SCR_012320) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/university-of-oklahoma

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 16,2024. Portal, Core facility

Proper citation: University of Oklahoma Labs and Facilities (RRID:SCR_012282) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/ec2kegg/

A perl-based package to perform comparative analysis of metabolic pathways between two organisms.

Proper citation: EC2KEGG (RRID:SCR_012127) Copy   

•   Source: SciCrunch Registry

https://www.genebygene.com/

Gene By Gene offers a full suite of genetic services, including clinical gene tests, exome sequencing, genome sequencing. In addition, the recent acquisition of bioinformatics experts, Arpeggi Inc., core also offers a full end-to-end solution for sequencing projects and bioinformatics.

Proper citation: Gene By Gene (RRID:SCR_012248) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/cnvcapseq/

Software for accurate and sensitive CNV discovery and genotyping in long-range targeted resequencing.

Proper citation: cnvCapSeq (RRID:SCR_012126) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/university-of-kansas

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 16,2024. Portal and core facility.

Proper citation: University of Kansas Labs and Facilities (RRID:SCR_012249) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/ealps/

Software that uses the genotype data in conjunction with the pooled sequence data in order to accurately estimate the proportions of the samples in the pool, even in cases where not all individuals in the pool were genotyped (eALPS-LD).

Proper citation: eALPS (RRID:SCR_012130) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/plek/

An alignment-free software tool which uses a computational pipeline based on an improved k-mer scheme and a support vector machine (SVM) algorithm to distinguish lncRNAs from messenger RNAs (mRNAs), in the absence of genomic sequences or annotations. It is especially suitable for PacBio or 454 sequencing data and large-scale transcriptome data.

Proper citation: PLEK (RRID:SCR_012132) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/ldx/

A computational software tool for estimating linkage disequilibrium (LD) from pooled resequencing data.

Proper citation: LDx (RRID:SCR_012131) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/agile-discoverypartners

Agile DiscoveryPartners is a Seattle-based chemistry provider, founded by experienced scientists with a track record of problem-solving and achievement in drug discovery. We aim to provide services to the life science community and focus on the needs of virtual companies, biotechs and academic and research institutions. ????????????? Our core expertise includes medicinal chemistry, synthetic chemistry, and design and synthesis of drug conjugates. www.agilediscoverypartners.com

Proper citation: Agile DiscoveryPartners (RRID:SCR_012376) Copy   

•   Source: SciCrunch Registry

https://code.google.com/p/reditools/

A suite of python scripts to perform high-throughput investigation of RNA editing using next-generation sequencing data.

Proper citation: REDItools (RRID:SCR_012133) Copy   

•   Source: SciCrunch Registry

http://pprospector.sourceforge.net/

A pipeline of software programs to design and analyze PCR primers. It is built in Python using the open-source PyCogent toolkit.

Proper citation: PrimerProspector (RRID:SCR_012136) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/chem-x-infinity

CHEM-X-INFINITY specializes in the synthesis and development of original compound libraries for High-Throughput Screening (HTS) activities and Hit validations. All our compund are designed around original scaffolds which have not or barely been described in the literature. We use different QSAR model which allow us to provide the best selection of compounds for your needs.

Proper citation: CHEM-X-INFINITY (RRID:SCR_012377) Copy   

•   Source: SciCrunch Registry

https://code.google.com/p/icelogo/

Software that builds on probability theory to visualize significant conserved sequence patterns in multiple peptide sequence alignments against background (reference) sequence sets that can be tailored to the studied system and the used protocol.

Proper citation: iceLogo (RRID:SCR_012137) Copy   

•   Source: SciCrunch Registry

http://musite.sourceforge.net/

A Java-based standalone application for predicting both general and kinase-specific protein phosphorylation sites.

Proper citation: Musite (RRID:SCR_012141) Copy   

•   Source: SciCrunch Registry

https://code.google.com/p/automotifserver/

Software that predicts the wide selection of 88 different types of the single amino acid post-translational modifications (PTM) in protein sequences. The source code and precompiled binaries of brainstorming tool are available under Apache licensing.

Proper citation: AMS (RRID:SCR_012140) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/phosphosite/

A bioinformatical software tool for analyzing (quantitative) phosphoproteome datasets. The program retrieves kinase-substrate predictions from NetworKIN and contains various statistical modules for futher analysis.

Proper citation: PhosphoSiteAnalyzer (RRID:SCR_012142) Copy   

•   Source: SciCrunch Registry