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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Calcium Imaging data Analysis Resource Report Resource Website 10+ mentions |
Calcium Imaging data Analysis (RRID:SCR_021533) | CaImAn | software application, software toolkit, software resource, data processing software, software library, image analysis software | Open source software tool for scalable calcium imaging data analysis. Used for large scale calcium imaging analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization. | calcium imaging analysis, movie handling, motion correction, source extraction, spike deconvolution, result visualization, OpenBehavior |
is listed by: OpenBehavior is related to: Calcium Imaging data Analysis project |
DOI:10.7554/elife.38173 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/caiman/ | SCR_021533 | 2026-07-28 09:45:11 | 37 | |||||||
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Spike Forest Resource Report Resource Website 1+ mentions |
Spike Forest (RRID:SCR_021532) | software application, software resource, data analysis software, data processing software | Open source and reproducible software suite that benchmarks performance of automated spike sorting algorithms across extensive, curated database of ground truth electrophysiological recordings, displaying results interactively on continuously updating website. | Validating automated neural spike sorters, electrophysiological recordings, spike sorting codes, spike sorting analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Spike Forest project |
DOI:10.7554/elife.55167 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/spikeforest/ | SCR_021532 | SpikeForest, SpikeForest v2 | 2026-07-28 09:45:24 | 1 | |||||||
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OpenFeeder Resource Report Resource Website |
OpenFeeder (RRID:SCR_021552) | instrument resource, project portal, portal, data or information resource | Project related to studying reward and feeding behavior. Provides open source automatic feeding system that can be customized for food types from seeds to pellets.System integrates plexiglass tubes, Arduino Uno, motor driver, and piezo sensor to reliably deliver accurate amounts of food, and can also be built using 3D printed parts. | Instrument, automatic feeding system, customized for food types, plexiglass tubes, Arduino Uno, motor driver, piezo sensor, deliver accurate amounts of food, 3D printed parts, OpenBehavior | is listed by: OpenBehavior | DOI:10.1016/j.ohx.2016.09.001 | Free, Freely available | SCR_021552 | 2026-07-28 09:45:12 | 0 | |||||||||
|
ToneBox Resource Report Resource Website |
ToneBox (RRID:SCR_021548) | instrument resource, project portal, portal, data or information resource | Project related to auditory behavioral task data collection.Provided high throughput operant conditioning in mouse homecage system was developed by University of Maryland,College Park, scientists.Automated system for training up to hundreds of mice in auditory behavioral task features custom Matlab GUI running on desktop which connects to Raspberry Pi to administer auditory stimuli from USB soundcard and collects auditory data as well as licking data from water spout with commercially available capacitive sensors. Parts list and build instructions are readily available from paper and associated GitHub repository. | Instrument, auditory behavioral task, automated system, training mice, auditory behavioral task, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of Maryland; Maryland; USA |
DOI:10.1523/eneuro.0121-19.2019 | Free, Freely available | SCR_021548 | 2026-07-28 09:45:12 | 0 | |||||||||
|
Capactive Touch Sensor project Resource Report Resource Website |
Capactive Touch Sensor project (RRID:SCR_021486) | instrument resource, project portal, portal, data or information resource | Project related to accurately counting and monitoring the behavior of organisms.Provides open source capacitive touch sensing system.Capacitive sensors are positioned to readily detect direct physical touches from rodent under investigation. Device,designed around capacitive touch sensor MPR121,accurately counts and monitors behavior of organisms. | Capacitive touch sensing system, capacitive sensor, detect direct physical touch, rodent touch, capacitive touch sensor, MPR121 sensor, accurate count, organism behavior monitoring, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1016/j.mex.2020.101024 | Free, Freely available | SCR_021486 | Capactive Touch Sensor | 2026-07-28 09:45:14 | 0 | ||||||||
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Two Armed Bandit Task project Resource Report Resource Website 1+ mentions |
Two Armed Bandit Task project (RRID:SCR_021483) | 2ABT | instrument resource, project portal, portal, data or information resource | Project related to training mice on task that requires continued updating of action/outcome relationships. Behavioral project includes task protocol and corresponding build instructions.Open source behavioral box used to train mice on task that requires continued updating of action/outcome relationships. Permits investigation of motivated behavior that requires flexible relationships between sensory stimuli and motor action. Project provided by Harvard Medical School scientists. | Behavioral box, train mice, action continued updating, outcome relationships updating, motivated behavior investigation, flexible relationships, sensory stimuli, motor action, OpenBehavior, Instrument |
is listed by: OpenBehavior has parent organization: Harvard Medical School; Massachusetts; USA |
Free, Freely available | SCR_021483 | Two Armed Bandit Task | 2026-07-28 09:45:14 | 2 | ||||||||
|
FinchScope project Resource Report Resource Website |
FinchScope project (RRID:SCR_021484) | instrument resource, project portal, portal, data or information resource | Project related to fluorescent imaging. Provides single photon fluorescent imaging microscope systems. System includes modular in vivo all optical neurophysiology rigs with transparent hardware, and acquisition and analysis software.Provide designs for 3D printed, lightweight, wireless capable microscope and motorized commutator, designed for multi month monitoring neural activity of zebra finches while they sing their courtship songs. Adapted for rodents and birds such as canaries. | Single photon, fluorescent imaging, microscope systems, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1088/1741-2552/aa6806 | Free, Freely available | SCR_021484 | FinchScope | 2026-07-28 09:45:23 | 0 | ||||||||
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UCLA Miniscope project Resource Report Resource Website 1+ mentions |
UCLA Miniscope project (RRID:SCR_021480) | instrument resource, project portal, portal, data or information resource | Project related to fluorescence imaging to record neural activity in awake, freely behaving mice.Provided system is developed by UCLA scientists. Miniscope system includes Miniscope with single, flexible coaxial cable to carry power, control signals, and imaging data to open source Data Acquisition hardware and software. Open source miniature fluorescence microscope uses wide-field fluorescence imaging to record neural activity in awake, freely behaving mice. | Miniature fluorescence microscope, wide field fluorescence imaging, record neural activity, activity record, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: E-Scope has parent organization: University of California at Los Angeles; California; USA |
SCR_021480 | UCLA Miniscope | 2026-07-28 09:45:14 | 2 | ||||||||||
|
Quantifying Animal Movement from Pre-recorded Videos Resource Report Resource Website |
Quantifying Animal Movement from Pre-recorded Videos (RRID:SCR_021515) | STL | software application, software toolkit, software resource, data processing software, image processing software, image analysis software | Software toolbox for visualizing and quantifying movement from pre-recorded videos.Used for summarizing animal movement data as single image ( spectral time lapse algorithm) as well as automate analysis of animal movement data. | Visualizing movement, quantifying movement, pre-recorded videos movement, summarizing animal movement data, single image, automate analysis, animal movement data, movement tracking, path analysis, video visualization, video summarization, image analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Quantifying Animal Movement from Pre-recorded Videos project |
DOI:10.12688/f1000research.3-19.v1 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/offline-behavior-video-analysis/ | SCR_021515 | Spectral Time Lapse, STL Toolbox | 2026-07-28 09:45:24 | 0 | ||||||
|
Platform for Acoustic STArtle Resource Report Resource Website |
Platform for Acoustic STArtle (RRID:SCR_021516) | ratPASTA | software application, data visualisation software, software resource, data processing software, software toolkit | Software package for processing and visualising data from startle experiments in rodents or experiments measuring grip strength in rodents. | Startle experiments, rodent, experiments measuring rodents grip strength, OpenBehavior |
is listed by: OpenBehavior is related to: Platform for Acoustic STArtle project |
DOI:10.1038/s41598-021-82710-6 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/pasta/, https://github.com/ikodvanj/ratPASTA/ | SCR_021516 | Platform for Acoustic STArtle | 2026-07-28 09:45:11 | 0 | ||||||
|
FaceMap Resource Report Resource Website 10+ mentions |
FaceMap (RRID:SCR_021513) | software application, software resource, data analysis software, data processing software | Software toolbox for unsupervised video analysis of rodent behavior.Used for videographic processing of head fixed rodent behavior. | Unsupervised video analysis, rodent behavior, videographic processing, head fixed rodent behavior, head fixed rodent, OpenBehavior |
is listed by: OpenBehavior is related to: FaceMap project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/facemap/ | SCR_021513 | 2026-07-28 09:45:11 | 19 | |||||||||
|
Skinner Box Resource Report Resource Website |
Skinner Box (RRID:SCR_021514) | software application, data analysis software, software resource, data processing software, data acquisition software | Software tool for data logging and analysis. | Open Skinner Box, data logging, data analysis, behavioral system, OpenBehavior |
is listed by: OpenBehavior is related to: Skinner Box project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/open-skinner-box/ | SCR_021514 | 2026-07-28 09:45:15 | 0 | |||||||||
|
Ratcave Resource Report Resource Website |
Ratcave (RRID:SCR_021599) | software library, software toolkit, software resource | Software 3D graphics python package for cognitive psychology experiments. Open source, cross platform Python library that adds 3D stimulus support to all OpenGL-based 2D Python stimulus libraries. These libraries include VisionEgg, Psychopy, Pyglet, and PyGam. | Stimuli to subjects, response record, Python, 3D graphics library, 3D stimulus support, OpenBehavior |
is listed by: OpenBehavior is related to: Ratcave project |
DOI:10.3758/s13428-019-01245-x | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/ratcave/ | SCR_021599 | 2026-07-28 09:45:13 | 0 | ||||||||
|
Bonsai Resource Report Resource Website 1+ mentions |
Bonsai (RRID:SCR_021512) | software application, software resource, data processing software, data acquisition software | Software tool as event based framework for processing and controlling data streams. Open source software tool as visual language for reactive programming.Used for composing reactive and asynchronous data streams coming from video cameras, microphones, electrophysiology systems or data acquisition boards. | Reactive programming visual language, composing reactive data streams, composing asynchronous data streams, video cameras data, microphones data, electrophysiology systems data, data acquisition boards, OpenBehavior |
is listed by: OpenBehavior is related to: Bonsai project |
DOI:10.3389/fninf.2015.00007 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/bonsai/ | SCR_021512 | 2026-07-28 09:45:24 | 8 | ||||||||
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Rigbox Resource Report Resource Website 1+ mentions |
Rigbox (RRID:SCR_021517) | software application, software resource, data management software | Open source software MATLAB toolbox for running behavioral neuroscience experiments and managing data.Used for probing neurons and behavior. Used for managing behavioral neuroscience experiments and acquiring experiment related data. | Managing behavioral neuroscience experiments, running behavioral neuroscience experiments, managing data, acquiring experiment related data, OpenBehavior |
is listed by: OpenBehavior is related to: Rigbox project |
DOI:10.1523/eneuro.0406-19.2020 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/rigbox/ | SCR_021517 | 2026-07-28 09:45:15 | 5 | ||||||||
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MNE Scan Resource Report Resource Website 1+ mentions |
MNE Scan (RRID:SCR_021530) | software application, software resource, data processing software, data acquisition software | Software tool for real time processing of electrophysiological data. | Electrophysiological data processing, medical regulatory requirements, build standalone applications, MEG data acquisition, MEG data processing, EEG data acquisition, MEG data acquisition, OpenBehavior |
is listed by: OpenBehavior is related to: MNE Scan project |
DOI:10.1016/j.jneumeth.2018.03.020 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/mne-scan/ | SCR_021530 | 2026-07-28 09:45:11 | 1 | ||||||||
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Ardbark project Resource Report Resource Website |
Ardbark project (RRID:SCR_021494) | instrument resource, project portal, portal, data or information resource | Project related to fear conditioning studies.Includes hardware and software tools. Provides Arduino based device for producing naturalistic stimuli which can be integrated with existing commercial operant chambers with few modifications.. Stores custom made .wav files on SD card, interfaces with Med System and plays the .wav files through ceiling mounted speakers. | Arduino based device, naturalistic stimuli, behavioral response, OpenBehavior, Instrument | is listed by: OpenBehavior | Free, Freely available | SCR_021494 | Ardbark | 2026-07-28 09:45:10 | 0 | |||||||||
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Novel Gustometer for Human Taste Research project Resource Report Resource Website |
Novel Gustometer for Human Taste Research project (RRID:SCR_021495) | instrument resource, project portal, portal, data or information resource | Project related to taste sensory system research in humans on behavioral, electrophysiological and hemodynamic activity levels.Provided system includes hardware and software tools. | Gustometer, taste sensory system, behavioral activity level, electrophysiological activity level, hemodynamic activity level, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.3758/s13428-018-1145-1 | Free, Freely available | SCR_021495 | Novel Gustometer for Human Taste Research | 2026-07-28 09:45:14 | 0 | ||||||||
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Home Cage Automated Skilled Reaching Apparatus project Resource Report Resource Website |
Home Cage Automated Skilled Reaching Apparatus project (RRID:SCR_021492) | HASRA | instrument resource, project portal, portal, data or information resource | Project includes system for individualized training of group housed mice in single pellet reaching task.System allows user to host up to 5 mice in their home environment and automatically administer single pellet reaching test to those animals.Platform for training and assessing skilled reaching in mice with minimal need for experimenter handling. | Individualized training, group housed mice, single pellet reaching task, assessing skilled reaching in mice, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1523/eneuro.0242-20.2020 | Free, Freely available | SCR_021492 | Home Cage Automated Skilled Reaching Apparatus | 2026-07-28 09:45:14 | 0 | |||||||
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Optimouse Resource Report Resource Website 1+ mentions |
Optimouse (RRID:SCR_021527) | software application, software resource, data analysis software, data processing software | Software tool for analysis of mouse position data.Open source software to analyze positions of individual mice, specifically their nose positions, in behavioral arena with the goal of minimizing error. | Mouse position data analysis, mouse position, position data, nose position, OpenBehavior |
is listed by: OpenBehavior is related to: Optimouse project |
DOI:10.1186/s12915-017-0377-3 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/optimouse/ | SCR_021527 | 2026-07-28 09:45:15 | 2 |
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