Tools   Select Another Resource Report Type

http://brig.sourceforge.net/

A cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data.

Proper citation: BRIG (RRID:SCR_007802) Copy   

•   Source: SciCrunch Registry

http://medgene.med.harvard.edu/MEDGENE/

An algorithm that generates lists of genes associated with a gene or one or more disorders. The algorithm can be used in high-throughput screening experiments, can create disease-specific micro-arrays, and can sort the results of gene profiling data. Based on the co-citations of all Medline records, MedGene can retrieve the following relationships: 1. A list of human genes associated with a particular human disease in ranking order 2. A list of human genes associated with multiple human diseases in ranking order 3. A list of human diseases associated with a particular human gene in ranking order 4. A list of human genes associated with a particular human gene in ranking order 5. The sorted gene list from other disease related high-throughput experiments, such as micro-array 6. The sorted gene list from other gene related high-throughput experiments, such as micro-array

Proper citation: MedGene (RRID:SCR_008122) Copy   

•   Source: SciCrunch Registry

http://www.usc.edu/

American private research university in Los Angeles, California. Founded in 1880, it is the oldest private research university in California. USC has historically educated a large number of the nation's business leaders and professionals.

Proper citation: University of Southern California; Los Angeles; USA (RRID:SCR_008093) Copy   

•   Source: SciCrunch Registry

http://www.zcu.cz/en/

The University of West Bohemia is a university in Pilsen, Czech Republic. It was founded in 1991 and consists of nine faculties.

Proper citation: University of West Bohemia; Pilsen; Czech Republic (RRID:SCR_008203) Copy   

•   Source: SciCrunch Registry

http://biq-analyzer-ht.bioinf.mpi-inf.mpg.de/

Software that currently allows to process an amount of bisulfite sequencing reads obtained in one or several bisulfite sequencing experiments.

Proper citation: BiQAnalyzer HT (RRID:SCR_008045) Copy   

•   Source: SciCrunch Registry

https://www.ustc.edu.cn/

Public research university in Hefei, Anhui, China, under direct leadership of Chinese Academy of Sciences. Member of elite C9 League. Chinese state Class A Double First Class University.

Proper citation: University of Science and Technology of China; Hefei; China (RRID:SCR_008038) Copy   

•   Source: SciCrunch Registry

http://www.uws.edu.au/

Western Sydney University is one of Australia's leading institutions. Ranked in the top 400 in the world.

Proper citation: University of Western Sydney; New South Wales; Australia (RRID:SCR_008156) Copy   

•   Source: SciCrunch Registry

http://erlichlab.wi.mit.edu/lobSTR/

A software tool for profiling Short Tandem Repeats (STRs) from high throughput sequencing data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: lobSTR (RRID:SCR_008030) Copy   

•   Source: SciCrunch Registry

http://inc.ucsd.edu/

The Institute for Neural Computation (INC) is an organized research unit of the University of California at San Diego with 44 members representing 14 research disciplines, devoted to the research and development of a new generation of massively parallel computers through a coherent and cohesive plan of research spanning the areas of neuroscience, visual science, cognitive science, artificial intelligence, mathematics, economics and social science, and computer engineering. INC is a leading center in the field of neural computation, initiating joint research projects, providing special facilities for carrying out research, coordinating the training of young investigators, and offering special activities through its Industrial Affiliates Program. The INC also supports training programs for graduate students and postdoctoral fellows in Cognitive Neuroscience (NIH) and Computational Neurobiology (NFS).

Proper citation: Institute for Neural Computation (RRID:SCR_008068) Copy   

•   Source: SciCrunch Registry

http://sys-bio.org/downloads/

An open source framework for systems biology connecting heterogeneous software applications written in diverse programming languages and running on different platforms-to communicate and use each others'' capabilities via a fast binary encoded-message system. It uses a broker-based, distributed, message-passing architecture, supports many languages including Java, C++, Perl & Python, and runs under Linux,OSX & Win32. Many biological modeling and simulation tools are a part of SBW, including JDesigner and Jarnac.

Proper citation: Systems Biology Workbench (RRID:SCR_008059) Copy   

•   Source: SciCrunch Registry

http://www.sheffield.ac.uk/

Founded in 1905, the University of Sheffield is one of the UK''s leading Russell Group universities with an outstanding record in both teaching and research.

Proper citation: University of Sheffield; South Yorkshire; United Kingdom (RRID:SCR_008056) Copy   

•   Source: SciCrunch Registry

http://drive5.com/usearch/manual/uchime_algo.html

An algorithm for detecting chimeric sequences.

Proper citation: UCHIME (RRID:SCR_008057) Copy   

•   Source: SciCrunch Registry

http://www.bhf.org.uk/

British charity and fundraiser for cardiovascular research.

Proper citation: British Heart Foundation (RRID:SCR_002905) Copy   

•   Source: SciCrunch Registry

https://uni-koeln.de/

Public university in Germany that offers degrees in law, management and business, the arts and humanities, and human sciences.

Proper citation: University of Cologne; Cologne; Germany (RRID:SCR_002903) Copy   

•   Source: SciCrunch Registry

http://cran.r-project.org/web/packages/CNVassoc/

Software package that carries out association analysis of common copy number variants in population-based studies. It includes functions for analysing association under a series of study designs (case-control, cohort, etc), using several dependent variables (class status, censored data, counts) as response, adjusting for covariates and considering various inheritance models. It also includes functions for inferring copy number (CNV genotype calling). Various classes and methods for generic functions (print, summary, plot, anova, ... ) have been created to facilitate the analysis.

Proper citation: CNVassoc (RRID:SCR_002901) Copy   

•   Source: SciCrunch Registry

http://colorado.edu/

Public university that offers degrees in the sciences, humanities, and social sciences.

Proper citation: University of Colorado Boulder; Colorado; USA (RRID:SCR_003114) Copy   

•   Source: SciCrunch Registry

http://chiulab.ucsf.edu/surpi/

Software providing a computational pipeline for pathogen identification from complex metagenomic next-generation sequencing (NGS) data generated from clinical samples.

Proper citation: SURPI (RRID:SCR_003071) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/fas-dpd/

Software program to design degenerate primers for PCR.

Proper citation: FAS-DPD (RRID:SCR_003068) Copy   

•   Source: SciCrunch Registry

http://pfind.ict.ac.cn/software/pFind/index.html

A search engine system for automated peptide and protein identification from tandem mass spectra.

Proper citation: pFind (RRID:SCR_003011) Copy   

•   Source: SciCrunch Registry

http://cran.r-project.org/web/packages/gap/

GAP is designed as an integrated package for genetic data analysis of both population and family data. Currently, it contains functions for sample size calculations of both population-based and family-based designs, classic twin models, probability of familial disease aggregation, kinship calculation, some statistics in linkage analysis, and association analysis involving one or more genetic markers including haplotype analysis with or without environmental covariates.

Proper citation: Genetic Analysis Package (RRID:SCR_003006) Copy   

•   Source: SciCrunch Registry