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http://folk.uio.no/thoree/FEST/

An R package for simulations and likelihood calculations of pair-wise family relationships using DNA marker data. (entry from Genetic Analysis Software)

Proper citation: R/FEST (RRID:SCR_013347) Copy   

•   Source: SciCrunch Registry

http://www.eisenlab.org/eisen/?page_id=42

Software to graphically browse results of clustering and other analyses from Cluster.

Proper citation: TreeView (RRID:SCR_013503) Copy   

•   Source: SciCrunch Registry

http://eisenlab.org/

Welcome to Michael Eisens lab in the Howard Hughes Medical Institute (HHMI) at University of California at Berkeley (UCB) and the Lawrence Berkeley National Lab (LBNL). We are part of the Department of Molecular and Cell Biology of UCB and the Genomics Division of LBNL, and the. We are located in Stanley Hall on the Berkeley campus.Our lab applies computational and experimental genomic approaches to study how genome sequences specify organismal form and function. We are particularly interested in the regulation of gene expression, and focus on how the information that specifies when and where genes are expressed is encoded in genome sequences, the role that regulated gene expression plays in animal development and the response of microbes to their environments, and how variation in and evolution of gene expression contributes to phenotypic variation and the remarkable diversity of life on Earth. This site contains a more detailed description of our research projects, an introduction to members of the lab, reprints of all of our publications, free downloadable and web-based software. Sponsor. Experimental work described here was supported by a Howard Hughes Medical Institute Investigator award to MBE and by National Institutes of Health (NIH) grant GM704403 to MBE and MDB. Computational analyses were supported in by NIH grant HG002779 to MBE. Work at Lawrence Berkeley National Laboratory was conducted under Department of Energy contract DE-AC02-05CH11231. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

Proper citation: EISEN LAB (RRID:SCR_013508) Copy   

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http://www.eisenlab.org/eisen/?page_id=41

Software to process fluorescent images of microarrays.

Proper citation: ScanAlyze (RRID:SCR_013507) Copy   

•   Source: SciCrunch Registry

http://tiger.dbs.nus.edu.sg/cnv-seq/

A method for detecting DNA copy number variation (CNV) using high-throughput sequencing., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: CNV-seq (RRID:SCR_013357) Copy   

•   Source: SciCrunch Registry

http://www.broadinstitute.org/annotation/medea/

THIS RESOURCE IS NO LONGER IN SERVCE, documented June, 2019.Comparative Genomic Visualization with Adobe Flash.

Proper citation: MEDEA (RRID:SCR_013356) Copy   

•   Source: SciCrunch Registry

http://www.cng.fr/

National genotyping center to advance research of the genetics of human diseases through internal and collaborative research programs. To this end they have developed a number of state-of-the-art genomics technology platforms and laboratories. Technology available at CNG ranges from a fully integrated high-throughput genotyping facility to a next generation sequencing platform. Activities include whole genome association studies (GWAS), pan-genomic expression profiling, epigenetic studies (DNA methylation, chromatin structure studies) and whole genome sequencing. All platforms, tools and know-how developed at CNG are open to outside groups for through collaborative research programs, and also applied by the Centre for its own research into the genetic basis of hereditary diseases.

Proper citation: National Genotyping Center; Ile-de-France; France (RRID:SCR_011412) Copy   

•   Source: SciCrunch Registry

http://www.nhlbi.nih.gov/

NHLBI provides leadership for a national program in diseases of the heart, blood vessels, lung, and blood; blood resources; and sleep disorders. Since October 1997, the NHLBI has also had administrative responsibility for the NIH Woman''s Health Initiative. The Institute plans, conducts, fosters, and supports an integrated and coordinated program of basic research, clinical investigations and trials, observational studies, and demonstration and education projects. The National Heart, Lung, and Blood Institute (NHLBI) provides global leadership for a research, training, and education program to promote the prevention and treatment of heart, lung, and blood diseases and enhance the health of all individuals so that they can live longer and more fulfilling lives. The NHLBI stimulates basic discoveries about the causes of disease, enables the translation of basic discoveries into clinical practice, fosters training and mentoring of emerging scientists and physicians, and communicates research advances to the public. It creates and supports a robust, collaborative research infrastructure in partnership with private and public organizations, including academic institutions, industry, and other government agencies. The Institute collaborates with patients, families, health care professionals, scientists, professional societies, patient advocacy groups, community organizations, and the media to promote the application of research results and leverage resources to address public health needs. The NHLBI also collaborates with international organizations to help reduce the burden of heart, lung, and blood diseases worldwide.

Proper citation: National Heart Lung and Blood Institute (RRID:SCR_011413) Copy   

•   Source: SciCrunch Registry

http://www.nih.gov/

NIH is the nations medical research agency - making important medical discoveries that improve health and save lives. The National Institutes of Health (NIH), a part of the U.S. Department of Health and Human Services, is the primary Federal agency for conducting and supporting medical research. Helping to lead the way toward important medical discoveries that improve peoples health and save lives, NIH scientists investigate ways to prevent disease as well as the causes, treatments, and even cures for common and rare diseases. NIH research impacts: * child and teen health, * men's health, * minority health, * seniors' health, * women's health, and * wellness and lifestyle issues. Composed of 27 Institutes and Centers, the NIH provides leadership and financial support to researchers in every state and throughout the world.

Proper citation: National Institutes of Health (RRID:SCR_011417) Copy   

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http://www.nias.affrc.go.jp/index_e.html

The largest agricultural research institute in Japan for basic life sciences focusing on understanding the biological phenomena of agriculturally important plants, insects, microbes and animals to create innovative technologies, and eventually contribute to the solution of global issues such as food shortage due to rapid population growth and environmental problems due to climate change. Research activities are pursued in a 5-year cycle to intensify all efforts towards a common goal and to forge the way for new breakthroughs with direct impact to agricultural productivity.

Proper citation: National Institute of Agrobiological Sciences; Ibaraki; Japan (RRID:SCR_011420) Copy   

•   Source: SciCrunch Registry

http://www.nibio.go.jp/english/

Proper citation: National Institute of Biomedical Innovation; Osaka; Japan (RRID:SCR_011423) Copy   

•   Source: SciCrunch Registry

http://www.nii.ac.jp/en/

Proper citation: National Institute of Informatics; Tokyo; Japan (RRID:SCR_011424) Copy   

•   Source: SciCrunch Registry

http://www-new.onu.edu/academics/pharmacy

Founded 1884, the Ohio Northern University''s College of Pharmacy has had the privilege to graduate over 7,000 pharmacists during its 125-year history. The R. H. Raabe College of Pharmacy is distinctive among other colleges of pharmacy as it integrates a comprehensive foundation in the pharmaceutical sciences and the practice of pharmacy along with a strong liberal arts curriculum. Our graduates are particularly active in local, state, and national health-related organizations. The College is committed to assuring that all students receive the finest education possible. Our faculty members are dedicated scholars with a desire to assist student learning. Our outstanding clinical facilities and preceptors illustrate the application of knowledge to actual therapeutic decisions. The Doctor of Pharmacy program is designed to provide the student with the preparation and background for a successful career in a vital health profession.

Proper citation: Ohio Northern University College of Pharmacy (RRID:SCR_011428) Copy   

•   Source: SciCrunch Registry

http://www.nichd.nih.gov/

A national institute that investigates human development throughout the entire life process, focusing on understanding developmental disabilities, including intellectual and developmental disabilities, and illuminating important events that occur during pregnancy. The NICHD conducts and supports laboratory research, clinical trials, and epidemiological studies that explore health processes; examines the impact of disabilities, diseases, and defects on the lives of individuals; and sponsors training programs for scientists, doctors, and researchers to ensure that NICHD research can continue. The Institute also supports research training across all its programs. In addition, an overarching responsibility of the NICHD is to disseminate information that emanates from Institute research programs to researchers, practitioners, other health care professionals, and the public.

Proper citation: National Institute of Child Health and Human Development (RRID:SCR_011429) Copy   

•   Source: SciCrunch Registry

http://www.nimhans.ac.in/

Institute of mental health and neuroscience in Bangalore, India.

Proper citation: National Institute of Mental Health and Neuro Sciences; Bangalore; India (RRID:SCR_011432) Copy   

•   Source: SciCrunch Registry

http://www.uni-saarland.de/en/home.html

Research university located in Saarbrücken, capital of German state of Saarland. It was founded in 1948 in Homburg in co-operation with France and is organized in six faculties that cover all major fields of science.

Proper citation: Saarland University; Saarbrucken; Germany (RRID:SCR_011510) Copy   

•   Source: SciCrunch Registry

https://www.sbpdiscovery.org/

Conducts world class collaborative research dedicated to finding cures for human disease, improving quality of life, and thus creating a legacy for its employees, partners, donors, and community. SBP is dedicated to discovering the fundamental molecular causes of disease and devising the innovative therapies of tomorrow. Has established major research programs in cancer, neurodegeneration, diabetes, and infectious, inflammatory, and childhood diseases. SBP is a U.S.-based, non-profit public benefit corporation, with operations in San Diego (La Jolla) and Orlando (Lake Nona) in Florida.

Proper citation: Sanford Burnham Prebys Medical Discovery Institute (RRID:SCR_011516) Copy   

•   Source: SciCrunch Registry

http://www.sfi.ie/

Science Foundation Ireland (SFI) is the national foundation for research in Ireland. SFI invests in academic researchers and research teams who are most likely to generate new knowledge, leading edge technologies and competitive enterprises in the fields of science and engineering underpinning three areas: Biotechnology; Information & Communications Technology (ICT) and Sustainable Energy & Energy Efficient Technologies (Energy). SFI also advances co-operative efforts among education, government and industry that support its fields of emphasis and promotes Ireland''s reputation for science and engineering research. SFI uses an international merit review process to choose far-reaching, high-impact research for support in its target areas and to fund excellent scientists and engineers on the dynamic intellectual frontiers of Biotechnology, Information Communications Technology (ICT) and Sustainable Energy & Energy Efficient Technologies (Energy)

Proper citation: Science Foundation Ireland (RRID:SCR_011517) Copy   

•   Source: SciCrunch Registry

http://www.psu.edu/

Public, research university. Includes undergraduate, graduate, professional and continuing education offered through resident instruction and online.

Proper citation: Pennsylvania State University (RRID:SCR_011484) Copy   

•   Source: SciCrunch Registry

http://www.pasteur.fr/fr

Institute that contributes to the prevention and treatment of infectious diseases through research, teaching and public health initiatives. The Institut Pasteur enjoys an independent status and has numerous other assets, with its research laboratories, technological platforms, teaching center and medical center all located on one campus in the heart of Paris. It also has an international network which currently counts 30 members spread over the five continents. With its unique setup and prestigious history, the Institut Pasteur has always stood at the forefront of innovation, adapting to the rapidly developing world of biological research and its applications, in particular in the field of biotechnology. Nowadays, the Institut Pasteur has four priorities to carry out its activities successfully : * to target its scientific strategy towards infectious diseases, microbiology, virology and immunology; * to adopt an outward-looking attitude, both within France, through agreements and collaborations with its partners : CNRS (French National Scientific Research Centre), Inserm (French National Institute for Health and Medical Research), universities, hospitals, industrial partners, etc., and at international level with the development of the Réseau International des Instituts Pasteur (International Network of the Institut Pasteur or RIIP), which counts 30 institutes; * to implement transversal research programs on ambitious themes and led by young researchers; * to preserve the foundation''s independence, in particular through increased resources from sponsorship and donations. These priorities, upholding the traditional tasks and values of the Institut Pasteur, place it at the cutting edge of the 21st century''s scientific and human challenges.

Proper citation: Pasteur Institute (RRID:SCR_011485) Copy   

•   Source: SciCrunch Registry