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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
University of Western Australia; Perth; Australia Resource Report Resource Website 1+ mentions |
University of Western Australia; Perth; Australia (RRID:SCR_012342) | UWA | university | Public research university in the Australian state of Western Australia. The university's main campus is in Perth, the state capital, with a secondary campus in Albany and various other facilities elsewhere. |
is related to: International AMD Genetics Consortium is related to: Aline is parent organization of: AMPDB: Arabidopsis Mitochondrial Protein Database is parent organization of: Retinal Topography Maps Database is parent organization of: SUB-cellular location database for Arabidopsis proteins II is parent organization of: Australian Medical Bioinformatics Resource is parent organization of: SIMHAP is parent organization of: Colour maps for brain imaging is parent organization of: University of Western Australia Genomics WA Core Facility |
Crossref funder ID:501100001801, Wikidata:Q1517021, ISNI:0000 0004 1936 7910, grid.1012.2, nlx_74663 | https://ror.org/047272k79 | SCR_012342 | UWA | 2026-07-25 12:07:29 | 7 | ||||||||
|
A5-miseq Resource Report Resource Website 100+ mentions |
A5-miseq (RRID:SCR_012148) | software resource | Software that produces high quality microbial genome assemblies on a laptop computer without any parameter tuning. A5-miseq does this by automating the process of adapter trimming, quality filtering, error correction, contig and scaffold generation, and detection of misassemblies. Unlike the original A5 pipeline, A5-miseq can use long reads from the Illumina MiSeq, use read pairing information during contig generation, and includes several improvements to read trimming. | standalone software, illumina, unix/linux, mac os x, bio.tools |
is used by: Nephele is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:25338718 | GNU General Public License | OMICS_06339, biotools:a5-miseq | https://bio.tools/a5-miseq | SCR_012148 | 2026-07-25 12:07:32 | 189 | |||||||
|
IITC Life Sciences: Plantar Test Apparatus Resource Report Resource Website 1+ mentions |
IITC Life Sciences: Plantar Test Apparatus (RRID:SCR_012152) | Plantar Test Apparatus | instrument resource | The IITC Plantar Analgesia Meter for thermal paw can be used on 12 mice, 6 rats and other animals (cats, rabbits) unrestrained when testing for narcotic drugs. Experiments are easy to perform, simply slide the test head under test subject, align the heat source via our exclusive guide light (idle state) by the attached, adjustable, angled mirror on test head to test subject and perform tests. | testing apparatus, hargreaves, paw radiant heat assay, toe toaster, hargreaves method, hardware, instrument, equipment | https://drive.google.com/file/d/1b8M9g_eTkJqkJzUFYijHFNj6yW9HLIWa/view?usp=drivesdk | rid_000075 | https://www.iitcinc.com/pdf/Plantar%20Test%20Hargreaves.pdf | SCR_012152 | Plantar Test Apparatus for Mice and Rats, Plantar Test Apparatus (Hargreaves Method) for Mice and Rats | 2026-07-25 12:07:30 | 2 | |||||||
|
Extech: EA15: EasyView Dual Input Temperature Datalogger Resource Report Resource Website |
Extech: EA15: EasyView Dual Input Temperature Datalogger (RRID:SCR_012151) | EA15 | instrument resource | Temperature datalogger compatible with 7 types of thermocouples. This dual input thermometer accepts Types J, K, E, T, R, S, and N thermocouples. RS-232 port to transfer data to PC for analysis (PC software and cable included) | data logger, thermocouple, hardware, instrument, equipment | Commercial | https://drive.google.com/file/d/1a0Hs2SPvnvrkIi3QalcgaLNkG-VmqFmv/view?usp=drivesdk | rid_000074 | https://www.extech-online.com/index.php?main_page=product_info&cPath=78_21_33&products_id=209 | http://www.extech.com/instruments/product.asp?catid=64&prodid=408 | SCR_012151 | EasyView Dual Input Temperature Datalogger, EA15 thermal data logger | 2026-07-25 12:07:28 | 0 | |||||
|
Superfund basic research program Resource Report Resource Website 1+ mentions |
Superfund basic research program (RRID:SCR_012313) | SBRP, SF | government granting agency | http://www.niehs.nih.gov/research/supported/srp/funding/index.cfm | has parent organization: National Institutes of Health | nlx_inv_1005143 | SCR_012313 | 2026-07-25 12:07:31 | 1 | ||||||||||
|
PrimBio Research Institute LLC Resource Report Resource Website |
PrimBio Research Institute LLC (RRID:SCR_012318) | service resource | PrimBio Research Institute uses the Ion Torrent gene sequencing platform to provide genomic sequencing services. We are also researching and developing targeted gene panels for diseases diagnosis, prevention and treatment. Provides customized analysis. | is listed by: ScienceExchange | SciEx_11901 | http://www.scienceexchange.com/facilities/primbio-research-institute-llc | SCR_012318 | PrimBio Research, PrimBio Research Institute | 2026-07-25 12:07:31 | 0 | |||||||||
|
EC2KEGG Resource Report Resource Website 1+ mentions |
EC2KEGG (RRID:SCR_012127) | software resource | A perl-based package to perform comparative analysis of metabolic pathways between two organisms. | standalone software, perl |
is listed by: OMICtools has parent organization: SourceForge |
PMID:25202338 | OMICS_05782 | SCR_012127 | 2026-07-25 12:07:29 | 8 | |||||||||
|
TorosGen Biotechnology Resource Report Resource Website |
TorosGen Biotechnology (RRID:SCR_012402) | TorosGen Biotechnology | commercial organization | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 22, 2024. | is listed by: ScienceExchange | THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_13052 | SCR_012402 | 2026-07-25 12:07:34 | 0 | |||||||||
|
cnvCapSeq Resource Report Resource Website 1+ mentions |
cnvCapSeq (RRID:SCR_012126) | software resource | Software for accurate and sensitive CNV discovery and genotyping in long-range targeted resequencing. | standalone software, java |
is listed by: OMICtools has parent organization: SourceForge |
PMID:25228465 | GNU Lesser General Public License | OMICS_05722 | SCR_012126 | 2026-07-25 12:07:28 | 2 | ||||||||
|
eALPS Resource Report Resource Website |
eALPS (RRID:SCR_012130) | software resource | Software that uses the genotype data in conjunction with the pooled sequence data in order to accurately estimate the proportions of the samples in the pool, even in cases where not all individuals in the pool were genotyped (eALPS-LD). | standalone software |
is listed by: OMICtools has parent organization: SourceForge |
PMID:24144111 | OMICS_05833 | SCR_012130 | 2026-07-25 12:07:28 | 0 | |||||||||
|
PLEK Resource Report Resource Website 100+ mentions |
PLEK (RRID:SCR_012132) | software resource | An alignment-free software tool which uses a computational pipeline based on an improved k-mer scheme and a support vector machine (SVM) algorithm to distinguish lncRNAs from messenger RNAs (mRNAs), in the absence of genomic sequences or annotations. It is especially suitable for PacBio or 454 sequencing data and large-scale transcriptome data. | standalone software, roche, pacific biosciences, unix/linux, c, python, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:25239089 | GNU General Public License | biotools:plek, OMICS_05839 | https://bio.tools/plek | SCR_012132 | PLEK: predictor of long non-coding RNAs and messenger RNAs based on an improved k-mer scheme | 2026-07-25 12:07:32 | 122 | ||||||
|
LDx Resource Report Resource Website |
LDx (RRID:SCR_012131) | software resource | A computational software tool for estimating linkage disequilibrium (LD) from pooled resequencing data. | standalone software |
is listed by: OMICtools has parent organization: SourceForge |
PMID:23152785 | OMICS_05834 | SCR_012131 | 2026-07-25 12:07:29 | 0 | |||||||||
|
REDItools Resource Report Resource Website 100+ mentions |
REDItools (RRID:SCR_012133) | software resource | A suite of python scripts to perform high-throughput investigation of RNA editing using next-generation sequencing data. | standalone software, illumina, roche, pacific biosciences, life technologies, python, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Google Code |
PMID:23742983 | MIT License | biotools:reditools, OMICS_05860 | https://bio.tools/reditools | SCR_012133 | 2026-07-25 12:07:28 | 141 | |||||||
|
PrimerProspector Resource Report Resource Website 10+ mentions |
PrimerProspector (RRID:SCR_012136) | software resource | A pipeline of software programs to design and analyze PCR primers. It is built in Python using the open-source PyCogent toolkit. | standalone software, python |
is listed by: OMICtools has parent organization: SourceForge |
PMID:21349862 | OMICS_05884 | SCR_012136 | 2026-07-25 12:07:28 | 25 | |||||||||
|
iceLogo Resource Report Resource Website 100+ mentions |
iceLogo (RRID:SCR_012137) | software resource | Software that builds on probability theory to visualize significant conserved sequence patterns in multiple peptide sequence alignments against background (reference) sequence sets that can be tailored to the studied system and the used protocol. | standalone software, web app, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Google Code |
PMID:19876014 | Apache License | biotools:icelogo, OMICS_05885 | https://bio.tools/icelogo | SCR_012137 | 2026-07-25 12:07:29 | 176 | |||||||
|
Musite Resource Report Resource Website 10+ mentions |
Musite (RRID:SCR_012141) | software resource | A Java-based standalone application for predicting both general and kinase-specific protein phosphorylation sites. | standalone software, java |
is listed by: OMICtools has parent organization: SourceForge |
PMID:20702892 | OMICS_05941 | SCR_012141 | 2026-07-25 12:07:32 | 12 | |||||||||
|
AMS Resource Report Resource Website |
AMS (RRID:SCR_012140) | software resource | Software that predicts the wide selection of 88 different types of the single amino acid post-translational modifications (PTM) in protein sequences. The source code and precompiled binaries of brainstorming tool are available under Apache licensing. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Google Code |
PMID:22555647 | Apache License | OMICS_05934, biotools:ams | https://bio.tools/ams | SCR_012140 | AutoMotif Service | 2026-07-25 12:07:29 | 0 | ||||||
|
PhosphoSiteAnalyzer Resource Report Resource Website |
PhosphoSiteAnalyzer (RRID:SCR_012142) | software resource | A bioinformatical software tool for analyzing (quantitative) phosphoproteome datasets. The program retrieves kinase-substrate predictions from NetworKIN and contains various statistical modules for futher analysis. | standalone software, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:22471441 | Free, Public | biotools:phosphositeanalyzer, OMICS_05951 | https://bio.tools/phosphositeanalyzer | SCR_012142 | 2026-07-25 12:07:28 | 0 | |||||||
|
ProNovus Bioscience LLC Resource Report Resource Website 1+ mentions |
ProNovus Bioscience LLC (RRID:SCR_012266) | ProNovus Bioscience | commercial organization | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 25,2024. | is listed by: ScienceExchange | THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_12377 | SCR_012266 | 2026-07-25 12:07:29 | 2 | |||||||||
|
HLAforest Resource Report Resource Website 1+ mentions |
HLAforest (RRID:SCR_012146) | software resource | Software that predicts HLA haplotype by hierarchically weighting reads and using an iterative, greedy, top down pruning technique. HLAforest uses BioPerl to read in FASTA files. Alignments use Bow tie, although any alignment tool can be used to generate SAM alignments for use as input to HLAforest. | standalone software, perl |
is listed by: OMICtools has parent organization: Google Code |
PMID:23840783 | Free for academic use, Apache License | OMICS_06170 | SCR_012146 | 2026-07-25 12:07:28 | 6 |
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