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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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HilbertVis Resource Report Resource Website 1+ mentions |
HilbertVis (RRID:SCR_007862) | HilbertVis | software resource | Software tool that allows to display very long data vectors in a space-efficient manner, allowing the user to visually judge the large scale structure and distribution of features simultaneously with the rough shape and intensity of individual features. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: European Bioinformatics Institute |
DOI:10.1093/bioinformatics/btp152 | OMICS_00627, biotools:hilbertvis | https://bio.tools/hilbertvis, https://sources.debian.org/src/r-bioc-hilbertvis/ | SCR_007862 | 2026-07-25 12:06:44 | 4 | |||||||
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University of Rennes 1; Rennes; France Resource Report Resource Website 1+ mentions |
University of Rennes 1; Rennes; France (RRID:SCR_007649) | Univ-Rennes 1 | university | The University of Rennes 1 is one of the two main universities in the city of Rennes, France. It is under the Academy of Rennes. It specializes in science, technology, law, economy, management and philosophy. |
is related to: MIP-DILI is related to: Empenn is parent organization of: VISAGES Research is parent organization of: GASSST is parent organization of: CoBaltDB |
nlx_31280 | SCR_007649 | Universite de Rennes 1, University of Rennes 1, Université de Rennes 1 | 2026-07-25 12:06:45 | 1 | |||||||||
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ResearchCrossroads Funding Opportunities Database Resource Report Resource Website |
ResearchCrossroads Funding Opportunities Database (RRID:SCR_007920) | ResearchCrossroads Funding | funding resource | A database of funding opportunities from both public and private funding sources. Search by keyword and the funding opportunities matching your criteria are displayed. Click on the funding title to view the complete record. You may also add opportunities to the ResearchCrossroads database if you have registered. | research funding, research money, database | has parent organization: ResearchCrossroads | SCR_007920 | Research Crossroads Funding | 2026-07-25 12:06:48 | 0 | |||||||||
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BRIG Resource Report Resource Website 100+ mentions |
BRIG (RRID:SCR_007802) | BRIG | software resource | A cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
DOI:10.1186/1471-2164-12-402 | OMICS_00929, biotools:brig | https://bio.tools/brig, https://sources.debian.org/src/brig/ | SCR_007802 | BLAST Ring Image Generator | 2026-07-25 12:06:45 | 497 | ||||||
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MedGene Resource Report Resource Website 1+ mentions |
MedGene (RRID:SCR_008122) | software resource | An algorithm that generates lists of genes associated with a gene or one or more disorders. The algorithm can be used in high-throughput screening experiments, can create disease-specific micro-arrays, and can sort the results of gene profiling data. Based on the co-citations of all Medline records, MedGene can retrieve the following relationships: 1. A list of human genes associated with a particular human disease in ranking order 2. A list of human genes associated with multiple human diseases in ranking order 3. A list of human diseases associated with a particular human gene in ranking order 4. A list of human genes associated with a particular human gene in ranking order 5. The sorted gene list from other disease related high-throughput experiments, such as micro-array 6. The sorted gene list from other gene related high-throughput experiments, such as micro-array | gene, disease, human order, microarray | has parent organization: Harvard University; Cambridge; United States | nif-0000-20869 | SCR_008122 | MedGene | 2026-07-25 12:06:48 | 4 | |||||||||
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University of Southern California; Los Angeles; USA Resource Report Resource Website 1+ mentions |
University of Southern California; Los Angeles; USA (RRID:SCR_008093) | USC | university | American private research university in Los Angeles, California. Founded in 1880, it is the oldest private research university in California. USC has historically educated a large number of the nation's business leaders and professionals. | private, research, university, American |
is related to: Alzheimers Disease Genetics Consortium is related to: Clinical and Translational Science Awards Consortium is related to: The Pancreatic Beta-Cell Consortium is parent organization of: Wavelet Analysis of Image Registration is parent organization of: wANNOVAR is parent organization of: Gene Aging Nexus is parent organization of: Bioscholar is parent organization of: Resource Center for Medical Ultrasonic Transducer Technology is parent organization of: Brainstorm is parent organization of: Biomedical Simulations Resource is parent organization of: Brain Operation Database is parent organization of: Karma is parent organization of: PANTHER is parent organization of: Biomedical Informatics Research Network is parent organization of: MethPipe is parent organization of: SPOT - Biological prioritization after a SNP association study is parent organization of: Bis-SNP is parent organization of: MLML is parent organization of: ENIGMA: Enhancing Neuro Imaging Genetics Through Meta-Analysis is parent organization of: lapdftext is parent organization of: Brain Architecture Management System is parent organization of: BIRN Coordinating Center is parent organization of: University of Southern California Department of Neuroscience is parent organization of: RSEG is parent organization of: University of Southern California Brain Project is parent organization of: Center for Premature Infant Health and Developement is parent organization of: Sub-Volume Thresholding Analysis is parent organization of: jViewbox is parent organization of: MultiPhase-SEG is parent organization of: LONI Java Image I/O Plugins is parent organization of: DualSurfaceMin is parent organization of: Charged Fluid Model for Brain Image Segmentation is parent organization of: CpG Island Searcher is parent organization of: Longitudinal Study of Generations is parent organization of: Biomarker Network is parent organization of: Nihon University Japanese Longitudinal Study of Aging is parent organization of: PhenoExplorer is parent organization of: Piranha is parent organization of: USC Flow Cytometry Core is parent organization of: University of Southern California School of Pharmacy Lentiviral Laboratory Core Facility is parent organization of: University of Southern California School of Pharmacy Graduate Programs is parent organization of: University of Southern California School of Pharmacy Histology Laboratory Core Facility is parent organization of: University of Southern California School of Pharmacy Translational Research Laboratory is parent organization of: University of Southern California Epigenome Center Data Production Facility is parent organization of: USC Stem Cell Core Facility is parent organization of: University of Southern California Labs and Facilities is parent organization of: USC Immune Monitoring Core Facility is parent organization of: USC Cancer Research Informatics Core is parent organization of: University of Southern California Keck School of Medicine; California; USA is parent organization of: muliAlignFree is parent organization of: GPSeq is parent organization of: CEDER is parent organization of: W3C Provenance Incubator Group Wiki is parent organization of: FadE is parent organization of: PerM is parent organization of: Clippers is parent organization of: NIMH Repository and Genomics Resources is parent organization of: CROP is parent organization of: NeuroScholar is parent organization of: GPCR Network is parent organization of: ENIGMA-DTI Pipeline is parent organization of: TomoMiner is parent organization of: MOCA is parent organization of: TopDom is parent organization of: NMF Toolbox is parent organization of: Data Archive BRAIN Initiative is parent organization of: Mouse Connectome Project is parent organization of: MethBase is parent organization of: OntoSoft is parent organization of: riborex is parent organization of: PombeX is parent organization of: University of Southern California CHLA Cellular Imaging Core Facility is parent organization of: University of Southern California CHLA Extracellular Vesicle Core Facility is parent organization of: ReproRehab Research Education Course is parent organization of: Global Alzheimers Association Interaction Network is parent organization of: USC-SIPI Image Database has organization facet: Neurodevelopmental MRI Database |
grid.42505.36, Wikidata:Q4614, ISNI:0000 0001 2156 6853, Crossref funder ID:100006034, nlx_24939 | https://ror.org/03taz7m60 | SCR_008093 | University of Southern California | 2026-07-25 12:06:46 | 3 | |||||||
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University of West Bohemia; Pilsen; Czech Republic Resource Report Resource Website |
University of West Bohemia; Pilsen; Czech Republic (RRID:SCR_008203) | UWB | university | The University of West Bohemia is a university in Pilsen, Czech Republic. It was founded in 1991 and consists of nine faculties. | is parent organization of: EEGbase | nlx_50579 | SCR_008203 | 2026-07-25 12:06:50 | 0 | ||||||||||
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BiQAnalyzer HT Resource Report Resource Website 10+ mentions |
BiQAnalyzer HT (RRID:SCR_008045) | BiQAnalyzer HT | software resource | Software that currently allows to process an amount of bisulfite sequencing reads obtained in one or several bisulfite sequencing experiments. | is listed by: OMICtools | OMICS_00631 | SCR_008045 | 2026-07-25 12:06:47 | 12 | ||||||||||
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University of Science and Technology of China; Hefei; China Resource Report Resource Website |
University of Science and Technology of China; Hefei; China (RRID:SCR_008038) | university | Public research university in Hefei, Anhui, China, under direct leadership of Chinese Academy of Sciences. Member of elite C9 League. Chinese state Class A Double First Class University. | nlx_90285 | http://www5.ustc.edu.cn/en/ | SCR_008038 | 2026-07-25 12:06:49 | 0 | |||||||||||
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University of Western Sydney; New South Wales; Australia Resource Report Resource Website |
University of Western Sydney; New South Wales; Australia (RRID:SCR_008156) | UWS | university | Western Sydney University is one of Australia's leading institutions. Ranked in the top 400 in the world. | is parent organization of: University of Western Sydney Labs and Facilities | nlx_155519 | SCR_008156 | University of Western Sydney | 2026-07-25 12:06:50 | 0 | |||||||||
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lobSTR Resource Report Resource Website 10+ mentions |
lobSTR (RRID:SCR_008030) | lobSTR | software resource | A software tool for profiling Short Tandem Repeats (STRs) from high throughput sequencing data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
PMID:22522390 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00109, biotools:lobstr | https://bio.tools/lobstr | SCR_008030 | lobSTR - Profiling STRs in personal genomes | 2026-07-25 12:06:49 | 47 | |||||
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Institute for Neural Computation Resource Report Resource Website |
Institute for Neural Computation (RRID:SCR_008068) | institution | The Institute for Neural Computation (INC) is an organized research unit of the University of California at San Diego with 44 members representing 14 research disciplines, devoted to the research and development of a new generation of massively parallel computers through a coherent and cohesive plan of research spanning the areas of neuroscience, visual science, cognitive science, artificial intelligence, mathematics, economics and social science, and computer engineering. INC is a leading center in the field of neural computation, initiating joint research projects, providing special facilities for carrying out research, coordinating the training of young investigators, and offering special activities through its Industrial Affiliates Program. The INC also supports training programs for graduate students and postdoctoral fellows in Cognitive Neuroscience (NIH) and Computational Neurobiology (NFS). | economics, artificial intelligence, cognitive neuroscience, cognitive science, computational neurobiology, computer engineering, mathematics, neuroscience, parallel computer, social science, visual science | has parent organization: University of California at San Diego; California; USA | nif-0000-10510 | SCR_008068 | UCSD INC | 2026-07-25 12:06:45 | 0 | |||||||||
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Systems Biology Workbench Resource Report Resource Website |
Systems Biology Workbench (RRID:SCR_008059) | SBW | software resource | An open source framework for systems biology connecting heterogeneous software applications written in diverse programming languages and running on different platforms-to communicate and use each others'' capabilities via a fast binary encoded-message system. It uses a broker-based, distributed, message-passing architecture, supports many languages including Java, C++, Perl & Python, and runs under Linux,OSX & Win32. Many biological modeling and simulation tools are a part of SBW, including JDesigner and Jarnac. | simulation, systems biology, bioinformatics | is listed by: 3DVC | DARPA ; DOE |
nif-0000-10441 | http://www.sys-bio.org/index.htm | SCR_008059 | 2026-07-25 12:06:47 | 0 | |||||||
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University of Sheffield; South Yorkshire; United Kingdom Resource Report Resource Website 1+ mentions |
University of Sheffield; South Yorkshire; United Kingdom (RRID:SCR_008056) | university | Founded in 1905, the University of Sheffield is one of the UK''s leading Russell Group universities with an outstanding record in both teaching and research. |
is affiliated with: OpenMinTeD is parent organization of: ZCre |
Crossref funder ID:501100000858, nlx_151620, ISNI:0000 0004 1936 9262, grid.11835.3e, Wikidata:Q823917 | https://ror.org/05krs5044 | SCR_008056 | University of Sheffield | 2026-07-25 12:06:49 | 6 | |||||||||
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UCHIME Resource Report Resource Website 1000+ mentions |
UCHIME (RRID:SCR_008057) | UCHIME | software resource | An algorithm for detecting chimeric sequences. |
is listed by: OMICtools is listed by: SoftCite |
OMICS_01115 | SCR_008057 | 2026-07-25 12:06:45 | 1777 | ||||||||||
|
Agadir Resource Report Resource Website 50+ mentions |
Agadir (RRID:SCR_008402) | algorithm | A prediction algorithm based on the helix/coil transition theory. Agadir predicts the helical behaviour of monomeric peptides. It only considers short range interactions. Conditions such as pH, temperature and ionic strength are used in the calculation. Modifications of the termini are also allowed. To submit a job to Agadir, log in the calculation part using the login button in the right bottom. Then fill-in the input form and proceed to next page, etc. You will reach a final page that resumes all the input information and allows you to run the calculation. You can submit one or more peptide sequences in one-letter format. Sequences should be separated by one return character. Spaces and tabulations are automatically removed. Only standard amino acids are accepted. Agadir accepts two modifications at the N-terminus (acetylation or succynilation), and one at the C-terminus (amidation). Just choose the desired option in the input form. You can use only one set of parameters: temperature, ionic strength (calibrated for NaCl) and pH, or explore a particular range of conditions for one parameter. In the latter case the intervals between any two values are: Ionic strength 0.05 M Temperature 1 K pH 0.2 units When setting the conditions for these parameters please be aware that the allowed ranges are: Ionic strength between 0.001 and 1 M Temperature between 273 and 400 K pH between 1 and 14 Output of the prediction at the residue level is available only when submitting no more than ten peptide sequences, and without any screening of conditions. Hstaple is the Hydrophobic Staple motif, Schellman is the Shellman motif, CaH are the expecte chemical shifts of the Calpha proton, 13Ca are the alpha Carbon 13 chemical shifts, JaN is the Jalpha--nitrogen coupling. | has parent organization: European Molecular Biology Laboratory | nif-0000-30072 | SCR_008402 | Agadir | 2026-07-25 12:06:48 | 54 | ||||||||||
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Species 2000 Resource Report Resource Website 1+ mentions |
Species 2000 (RRID:SCR_008231) | nonprofit organization | Species 2000 is a federation of database organizations working closely with users, taxonomists and sponsoring agencies. The goal of the Species 2000 project is to create a validated checklist of all the world''s species (plants, animals, fungi and microbes). This is being achieved by bringing together an array of global species databases covering each of the major groups of organisms. Each database covers all known species in the group, using a consistent taxonomic system. The participating databases are widely distributed throughout the world and currently number 52. The existing global species databases presently account for some 60% of the total known species, so substantial investment in new databases will be needed for full coverage of all taxa to be achieved. | fungus, animal, global, microbe, organism, plant, specie, taxonomy, taxonomy and identification databases | has parent organization: University of Reading; Reading; United Kingdom | grid.438063.a, nif-0000-21377, ISNI: 0000 0001 0496 8228 | https://ror.org/04m098c22 | SCR_008231 | Species 2000 | 2026-07-25 12:06:46 | 7 | ||||||||
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Post-DVM Training Program on Animal Model Research for Veterinarians Resource Report Resource Website |
Post-DVM Training Program on Animal Model Research for Veterinarians (RRID:SCR_008303) | training resource | An institutional training program to train veterinarians in conducting research. The program trains veterinarians in acquiring the skills of a researcher as they undergo a specific M.S. or Ph.D program. The program urges graduates to take part in research concerning animal models of infectious diseases, immunology, and nutrition, among other health topics. | animal, biology, biomedical, comparative, disease, human, immunology, infectious, medicine, model, molecular, nutrition, physiology, research, toxicology, veterinarian | NIH | Must enroll in program | nif-0000-24382 | http://www.vetmed.vt.edu | SCR_008303 | Post-DVM Program on AMRV, Virginia-Maryland College of Veterinary Medicine | 2026-07-25 12:06:49 | 0 | |||||||
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RJaCGH Resource Report Resource Website 1+ mentions |
RJaCGH (RRID:SCR_008381) | RJaCGH | software resource | Software for Bayesian analysis of CGH microarrays fitting Hidden Markov Chain models. | is listed by: OMICtools | GNU General Public License, v3 | OMICS_00731 | SCR_008381 | RJaCGH: Reversible Jump MCMC for the analysis of CGH arrays | 2026-07-25 12:06:51 | 1 | ||||||||
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OnlineCall Resource Report Resource Website |
OnlineCall (RRID:SCR_008263) | OnlineCall | software resource | A fast basecalling scheme for Illumina''s Next Generation sequencing machines, specifically designed for GAII. | is listed by: OMICtools | OMICS_01153 | SCR_008263 | 2026-07-25 12:06:46 | 0 |
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