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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Crossref EventData Resource Report Resource Website 1+ mentions |
Crossref EventData (RRID:SCR_016281) | database, data or information resource | Database of events about articles that is run by CrossRef. It allows users to view social media mentions, news publication references, annotations, and more. | cross, reference, event, data, mention, social, media | has parent organization: CrossRef | Freely available | SCR_016281 | Event Data, EventData | 2026-07-25 12:12:10 | 3 | |||||||||
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Grid-Enabled Measures Database Resource Report Resource Website 1+ mentions |
Grid-Enabled Measures Database (RRID:SCR_016043) | GEM | database, data or information resource | Database that contains behavioral and social science measures organized by theoretical constructs. GEM is designed to enable researchers to use common measures with the goal of exchanging harmonized data. | behavior, social, data, research, data sharing, exchange | NCI Y01 C16006001 | PMID:21521586 | Freely available | SCR_016043 | GEM Database | 2026-07-25 12:12:10 | 1 | |||||||
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Genes, Genome Features and Maps Resource Report Resource Website 1+ mentions |
Genes, Genome Features and Maps (RRID:SCR_017524) | database, data or information resource | Searchable database of mouse genes, DNA segments, cytogenetic markers and QTLs. MGI provides access to integrated data on mouse genes and genome features, from sequences and genomic maps to gene expression and disease models. | Data, mouse, gene, DNA, segment, cytogenetic, marker, MGI, genome, feature, sequenced, genomic, map, expression, disease, model | Free, Freely available | SCR_017524 | 2026-07-25 12:12:12 | 5 | |||||||||||
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TransmiR Resource Report Resource Website 50+ mentions |
TransmiR (RRID:SCR_017499) | database, data or information resource | Collection of transcription factor microRNA regulations. TransmiR v2.0 manually curated TF-miRNA regulations from publications during 2013-2017 and included ChIP-seq-derived TF-miRNA regulation data. | Transcription, factor, miRNA, regulation, manually, curated, TF-miRNA, ChIPseq, derived, TF-miRNA, data, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian has parent organization: Peking University; Beijing; China |
Restricted | biotools:transmir | https://bio.tools/transmir/ | SCR_017499 | TransmiR v2.0 | 2026-07-25 12:12:14 | 90 | |||||||
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EVmiRNA Resource Report Resource Website 1+ mentions |
EVmiRNA (RRID:SCR_018795) | database, data or information resource | Collection of comprehensive miRNA expression profiles in extracellular vesicles from tissues. Includes miRNA expression profiles, miRNA regulated pathways, miRNA function, miRNA related drugs and publications to support miRNA biomarker discovery. | miRNA, miRNA expression profile, extracellular vesicle, tissue, miRNA regulated pathway, miRNA function, drug, publication, miRNA biomarker, data | National Key Research and Development Program of China ; National Natural Science Foundation of China ; China Postdoctoral Science Foundation |
PMID:30335161 | Free, Freely available | SCR_018795 | Extracellular Vesicles miRNA Database | 2026-07-25 12:12:13 | 1 | ||||||||
|
Viral Integrated Structural Evolution Dynamic Database Resource Report Resource Website 1+ mentions |
Viral Integrated Structural Evolution Dynamic Database (RRID:SCR_018793) | VIStEDD | database, data or information resource | Database of SARS-CoV-2 and other viruses. Integrates structural and dynamic insights with viral evolution for proteins coded by virus. Each virus within database has workflow performed on each protein. Workflow consists of protein modeling, molecular dynamic simulations, evolutionary analysis, and mapping of protein-protein interactions. On page for each protein is link to individual protein data folder system, video of protein rotating with conservation, details of protein function, widget to purchase 3D print of protein at cost of production, amino acid movement from molecular dynamic simulations, and table of data for each amino acid of protein. | Virus, SARS-CoV-2, COVID-19, proteins coded by virus, viral evolution, protein, data, amino acid, protein modeling, molecular dynamic simulation, evolutionary analysis, protein-protein interaction, protein- protein interaction mapping, protein data folder system, rotating protein video, protein function, molecular dynamic simulation | has parent organization: Michigan State University; Michigan; USA | COVID-19 | NIGMS R01 GM108618; NIEHS K01 ES025435 |
PMID:32511397 | Free, Freely available | SCR_018793 | Viral Integrated Structural Evolution Dynamic Database, SARS-CoV-2 dynamicome database | 2026-07-25 12:12:14 | 3 | |||||
|
C. elegans RNAi Collection (Ahringer) Resource Report Resource Website 10+ mentions |
C. elegans RNAi Collection (Ahringer) (RRID:SCR_017064) | database, data or information resource | C. elegans RNAi feeding library distributed by Source BioScience Ltd. Designed for genome wide study of gene function in C. elegans through loss of function studies. | Source BioScience Ltd, data, collection, bacterial, strain, Caenorhabditis elegans, RNA, interference, RNAi, gene, function, analysis, feeding, library | has parent organization: University of Cambridge; Cambridge; United Kingdom | Howard Hughes Medical Institute Predoctoral Fellow- ship ; Wellcome Trust Senior Research Fellowship |
PMID:12828945 | Available for purchase | SCR_017064 | 2026-07-25 12:12:13 | 14 | ||||||||
|
Finnish Twin Cohort Study Resource Report Resource Website 1+ mentions |
Finnish Twin Cohort Study (RRID:SCR_017477) | database, data or information resource | Twin panel consists of three nationwide samples of Finnish twin pairs. Major studies include nicotine dependence, eating disorders and brain imaging and alcohol use. | Twin, Finnish, nicotine, dependence, eating, disorder, brain, imaginig, alcohol, data, | has parent organization: University of Helsinki; Helsinki; Finland | Restricted | SCR_017477 | 2026-07-25 12:12:12 | 1 | ||||||||||
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OSHA Occupational Chemical Database Resource Report Resource Website 1+ mentions |
OSHA Occupational Chemical Database (RRID:SCR_018203) | database, data or information resource | Chemical inventory for occupational chemical information. Collects information from several government agencies and organizations. Includes information about identification and physical properties, exposure limits, sampling. | OSHA, occupational chemical data, chemical inventory, government, identification and physical property, exposure limit, sampling, chemical reagent, data | Free, Freely available | SCR_018203 | 2026-07-25 12:12:14 | 3 | |||||||||||
|
Alberta Diabetes Institute IsletCore database Resource Report Resource Website 1+ mentions |
Alberta Diabetes Institute IsletCore database (RRID:SCR_018566) | database, data or information resource | Collection of data from all pancreatic islet isolations. | Pancreatic islet, data set, image collection, human islet isolation data, human pancreatic islet, data | is related to: University of Alberta; Alberta; Canada | diabetes | Restricted | SCR_018566 | 2026-07-25 12:12:15 | 5 | |||||||||
|
miRWalk Resource Report Resource Website 1000+ mentions |
miRWalk (RRID:SCR_016509) | database, data or information resource | Software tool to store the predicted and the experimentally validated microRNA (miRNA)-target interaction pairs. Predictions within the complete sequence of genes of human, mouse, and rat genomes. Integrates a comparative platform of miRNA-binding sites resulting from ten different prediction datasets. | microRNA, target, interaction, pair, binding, site, sequence, gene, data, FASEB list | is listed by: OMICtools | PMID:26226356 | Free, Available for download, Freely available | SCR_016509 | 2026-07-25 12:12:12 | 1180 | |||||||||
|
EPSD Eukaryotic Phosphorylation Site Database Resource Report Resource Website 1+ mentions |
EPSD Eukaryotic Phosphorylation Site Database (RRID:SCR_016514) | EPSD | database, data or information resource | Software tool as an annotated database of protein phosphorylation sites in eukaryotes. Contains experimentally identified and conserved p-sites which were collected from phosphoproteomic studies. | protein, phosphorylation, site, eukaryotes, phosphoproteomic, data | has parent organization: Huazhong University of Science and Technology; Wuhan; China | Special Project on Precision Medicine under the National Key R&D Program 2017YFC0906600; the Natural Science Foundation of China 31671360; the Fundamental Research Funds for the Central Universities 2017KFXKJC001 |
Free, Freely available | SCR_016514 | Eukaryotic Phosphorylation Site Database, EPSD | 2026-07-25 12:12:10 | 1 | |||||||
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Altered States Database Resource Report Resource Website 1+ mentions |
Altered States Database (RRID:SCR_016350) | ASDB | database, data or information resource | Database as an open science framework with a scientific data extracted from scientific literature about various altered states of consciousness assessed with questionnaires. Used to compare what experiences are elicited by different drugs and non-pharmacological methods that induce altered states to help to understand human consciousness functions. Is listed by Neuroimaging Informatics Tools. | altered, state, database, comprised, questionnaire, data, consciousness, neuroscience | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Wikimedia Foundation ; Stifterverband ; VolkswagenStiftung |
DOI:10.17605/OSF.IO/8MBRU | Free, Freely available | http://alteredstatesdb.org/#focus | SCR_016350 | Altered States Database | 2026-07-25 12:12:12 | 2 | |||||
|
CellPhoneDB Resource Report Resource Website 100+ mentions |
CellPhoneDB (RRID:SCR_017054) | database, data or information resource | Collection of publicly available data of curated receptors, ligands and their interactions. Integrates existing datasets that pertain to cellular communication and new manually reviewed information. Used to search for particular ligand or receptor or to interrogate single cell transcriptomics data. | collection, publicly, available, data, curated, receptor, ligand, interaction, heterometric, complex, dataset, cellular, transcriptomic, FASEB list |
has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom works with: UniProt works with: Ensembl works with: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) works with: IMEx - The International Molecular Exchange Consortium works with: International Union of Basic and Clinical Pharmacology |
PMID:30429548 | Free, Available for download, Freely available | https://github.com/Teichlab/cellphonedb | SCR_017054 | 2026-07-25 12:12:13 | 367 | ||||||||
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Database of Open Chromatin Regions Resource Report Resource Website 1+ mentions |
Database of Open Chromatin Regions (RRID:SCR_016614) | database, data or information resource | Collection of open chromatin regions from sequencing data. Metadata as entire curated DNase-I hypersensitive sites (DHS) on the whole genome datasets and data specific to each chromosome. | collection, open, chromatin, region, sequencing, data, metadata, dataset | Free, Available for download, Freely available | SCR_016614 | 2026-07-25 12:12:12 | 3 | |||||||||||
|
mqtldb Resource Report Resource Website 10+ mentions |
mqtldb (RRID:SCR_018002) | mqtldb | database, data or information resource | Data collection of large scale genome wide DNA methylation analysis of 1,000 mother-child pairs at serial time points across life course (ARIES). | Data, large scale, genome, DNA methylation, analysis, mother-child pair, serial time point, life course, aeries, methylation, quantitative trait loci, database | DOI:10.1186/s13059-016-0926-z | SCR_018002 | methylation quantitative trait loci database | 2026-07-25 12:12:12 | 36 | |||||||||
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PostgreSQL Resource Report Resource Website 100+ mentions |
PostgreSQL (RRID:SCR_021067) | database, data or information resource | Open source object relational database system that uses and extends SQL language combined with many features that safely store and scale the most complicated data workloads. PostgreSQL runs on all major operating systems. | Object relational database system, SQL language, data storage, data, database system |
uses: pgAdmin is listed by: SoftCite has parent organization: University of California at Berkeley; Berkeley; USA |
Free, Available for download, Freely available | SCR_021067 | Postgres | 2026-07-25 12:12:15 | 108 | |||||||||
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Scopus Resource Report Resource Website 100+ mentions |
Scopus (RRID:SCR_022559) | database, data or information resource | Abstract and indexing database with full text links that is produced by Elsevier Co. Combines expertly curated abstract and citation database with enriched data and linked scholarly literature across wide variety of disciplines. | Elsevier Co, abstract and citation database, data, scholarly literature, abstract and indexing database, full text links | is listed by: SoftCite | PMID:16522216 | SCR_022559 | 2026-07-25 12:12:16 | 324 | ||||||||||
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ClinWiki Resource Report Resource Website |
ClinWiki (RRID:SCR_021297) | database, data or information resource | Clinical trials database. | Clinical trials, data, Wikidata | is related to: Wikidata | William Hoos | Free, Freely available | Wikidata_Q96777166 | https://www.wikidata.org/wiki/Q96777166 | SCR_021297 | 2026-07-25 12:12:15 | 0 | |||||||
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trinetx Resource Report Resource Website 100+ mentions |
trinetx (RRID:SCR_022760) | database, data or information resource | Network of healthcare organizations, together with data partners in Brazil, South Korea, and Japan, to bring clinical facts on more than 250 million patients around the world. Federated model so users of this data are ensured new patients, observations, and results every day, all harmonized to standard terminology like ICD-10 and LOINC without any data wrangling required at the point of care. The raw data is not available to authors of papers and papers in medicine are being retracted. | Data, medical data, clinical facts, patients around the world, raw data is not available to authors, papers in medicine are being retracted | Restricted | SCR_022760 | 2026-07-25 12:12:17 | 139 |
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