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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Max Planck Institute of Biochemistry Mass Spectrometry Core Facility Resource Report Resource Website 10+ mentions |
Max Planck Institute of Biochemistry Mass Spectrometry Core Facility (RRID:SCR_025745) | MPIB-MS | access service resource, service resource, core facility | Mass spectrometry core facility. Facility uses chromatography systems, mass spectrometers and workflows for in-depth analysis of biomolecules. | Mass spectrometry, chromatography systems, mass spectrometers, biomolecules, analysis, | has parent organization: Max Planck Institute of Biochemistry; Martinsried; Germany | Restricted | SCR_025745 | Mass Spectrometry Facility, Max Planck Institute of Biochemistry Mass Spectrometry Facility | 2026-07-28 09:46:27 | 10 | ||||||||
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AtomicJ Resource Report Resource Website 1+ mentions |
AtomicJ (RRID:SCR_026023) | software application, data analysis software, software resource, data processing software, image analysis software | Software application for analysis of force microscopy recordings, including images and force curves. Allows for fast and reliable processing of single force curves and force maps, providing estimation of mechanical properties of sample. | force microscopy recordings, images, force curves, analysis, single force curves processing, force maps processing, | Polish Ministry of Science and Higher Education ; European Union structural funds |
PMID:24985823 | Free, Freely available, | SCR_026023 | 2026-07-28 09:46:30 | 3 | |||||||||
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Seattle Childrens Research Institute Behavioral Phenotyping Core Facility Resource Report Resource Website 1+ mentions |
Seattle Childrens Research Institute Behavioral Phenotyping Core Facility (RRID:SCR_026371) | BPC | access service resource, service resource, core facility | Core dedicated to the protocol driven collection, analysis, and reporting of behavioral data using a blend of classic and innovative assays. Supports neuroscience, psychology, pharmacology, genetics, cancer, and development by providing advanced tools and expertise for the precise measurement and interpretation of behavior. | ABRF, precise measurement, interpretation of behavior, collection, analysis, reporting, behavioral data, |
is listed by: ABRF CoreMarketplace has parent organization: Seattle Childrens Research Institute; Washington; USA |
ABRF_3036 | https://coremarketplace.org/?FacilityID=3036&citation=1 | SCR_026371 | , Seattle Childrens Research Institute Behavioral Phenotyping Core, Behavioral Phenotyping Core | 2026-07-28 09:46:37 | 1 | |||||||
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singleCellTK Resource Report Resource Website 1+ mentions |
singleCellTK (RRID:SCR_026813) | SCTK | software toolkit, software resource | Software R package provides interface to popular tools for importing, quality control, analysis, and visualization of single cell RNA-seq data. Allows users to integrate tools from various packages at different stages of analysis workflow. | importing, quality control, analysis, visualization, single cell RNA-seq data, | Free, Available for download, Freely available | https://www.camplab.net/sctk/ | SCR_026813 | Single Cell ToolKit | 2026-07-28 09:46:48 | 2 | ||||||||
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University of Connecticut Advanced Light Microscopy Core Facility Resource Report Resource Website |
University of Connecticut Advanced Light Microscopy Core Facility (RRID:SCR_027547) | access service resource, service resource, core facility | Facility provides training and access to advanced light microscopy systems at an hourly rate. In addition, we are available to consult with and support users at every stage of a project including: experimental design, sample preparation, image acquisition, analysis, and data preparation. | ABRF, advanced light microscopy, microscopy, experimental design, sample preparation, image acquisition, analysis, data preparation, |
is listed by: ABRF CoreMarketplace has parent organization: University of Connecticut; Connecticut; USA |
ABRF_5546 | https://https://coremarketplace.org/?FacilityID=5546&citation=1 | SCR_027547 | , University of Connecticut Advanced Light Microscopy Facility, Advanced Light Microscopy Facility | 2026-07-28 09:46:59 | 0 | ||||||||
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Michigan Technological University Materials Characterization and Fabrication Core Facility Resource Report Resource Website |
Michigan Technological University Materials Characterization and Fabrication Core Facility (RRID:SCR_027872) | access service resource, service resource, core facility | Core facility provides tools for imaging, analysis, environmental testing, and micro/nanofabrication. Offers data, expertise, and hands-on training. From advanced materials to environmental systems, MCFF is the hub where discovery meets precision. | ABRF, imaging, analysis, environmental testing, micro, nano, fabrication |
uses: Asylum Research: MFP-3D-BIO Atomic Force Microscope uses: Thermo Fisher: Apreo 2 FE-SEM Electron Microscope is listed by: ABRF CoreMarketplace has parent organization: Michigan Technological University; Houghton; USA |
Open | ABRF_5732 | https://https://coremarketplace.org/?FacilityID=5732&citation=1 | SCR_027872 | , Materials Characterization and Fabrication Facility(MCFF), Michigan Technological University Materials Characterization and Fabrication Facility(MCFF) | 2026-07-28 09:47:05 | 0 | |||||||
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Cornell University Chemistry MS Core Facility Resource Report Resource Website |
Cornell University Chemistry MS Core Facility (RRID:SCR_028079) | access service resource, service resource, core facility | Core specializes in the analysis of small organic and organometallic analytes. Provides access to mass spectrometers for all. | ABRF, analysis, organic, organometallic, analytes |
is listed by: ABRF CoreMarketplace has parent organization: Cornell University; New York; USA |
Open | ABRF_5812 | https://https://coremarketplace.org/?FacilityID=5812&citation=1 | SCR_028079 | Cornell University Chemistry MS Facility | 2026-07-28 09:47:16 | 0 | |||||||
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Roswell Park Comprehensive Cancer Center Biostatistics and Statistical Genomics Shared Resource BSGSR Core Facility Resource Report Resource Website |
Roswell Park Comprehensive Cancer Center Biostatistics and Statistical Genomics Shared Resource BSGSR Core Facility (RRID:SCR_028371) | access service resource, service resource, core facility | Core offers services in design, oversight, implementation, analysis, publication, and reporting of scientific studies including articulating study objectives and hypotheses, grant writing, conceiving appropriate cost-effective designs and models for achievement of study objectives, monitoring interim and final analyses, and co-authoring abstracts and manuscripts. | ABRF, services, design, oversight, implementation, analysis, publication, reporting of scientific studies |
is listed by: ABRF CoreMarketplace has parent organization: Roswell Park Comprehensive Cancer Center |
ABRF_5904 | https://https://coremarketplace.org/?FacilityID=5904&citation=1 | SCR_028371 | Biostatistics & Statistical Genomics Shared Resource (BSGSR) | 2026-07-28 09:47:12 | 0 | ||||||||
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SciRoKo Resource Report Resource Website 1+ mentions |
SciRoKo (RRID:SCR_000941) | software resource | Comparative genomics software that assists in whole genome microsatellite search and investigation. The command line version is called SciRoKoCo. The perl script DesignPrimer can be used to design PCR primer pairs for the SciRoKo output. | genomics, comparative, genome, microsatellite, analysis, investigation | is listed by: OMICtools | PMID:17463017 | Free, Available for download, Freely available | OMICS_00113 | SCR_000941 | 2026-07-25 12:04:51 | 6 | ||||||||
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SOAPfusion Resource Report Resource Website 1+ mentions |
SOAPfusion (RRID:SCR_000079) | SOAPfusion | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 22,2022. An open source software tool for fusion discovery with paired-end RNA-Seq reads. The tool follows a different strategy by finding fusions directly and verifying them, differentiating it from all other existing tools by finding the candidate regions and searching for the fusions afterwards. | software, open source, free, RNA, sequencing, data, computing, research, analysis, rna-seq, candidate regions, bio.tools |
is listed by: OMICtools is listed by: SOAP is listed by: bio.tools is listed by: Debian |
Guangdong Innovative Research Team Program ; General Research Fund of the Hong Kong Government |
PMID:24123671 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01358, biotools:soapfusion | https://bio.tools/soapfusion | SCR_000079 | 2026-07-25 12:04:34 | 3 | |||||
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F2DockClient Resource Report Resource Website 1+ mentions |
F2DockClient (RRID:SCR_000185) | F2DockClient | software resource | A collection of user interfaces packaged into TexMol that allows a user to interactively submit protein-protein docking jobs to a remote computing cluster, monitor the status of the jobs and retrieve and visually display/compare the results. | user interface, protein-protein docking, computing cluster, analysis, | is listed by: OMICtools | National Science Foundation ; National Institutes of Health |
PMID:23483883 | Free, Available for download, Freely available | OMICS_01599 | SCR_000185 | 2026-07-25 12:04:37 | 1 | ||||||
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FlexX Resource Report Resource Website 1+ mentions |
FlexX (RRID:SCR_000186) | FlexX | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. A software with two main applications: predicting the binding mode of three-dimensional proteins and virtual high-throughput screening (vHTS) which allows screening of compounds at rapid speeds. | protein binding, analysis, ligand, prediction, compounds, screening, protein-ligand docking, | is listed by: OMICtools | PMID:15382244 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01600 | SCR_000186 | 2026-07-25 12:04:36 | 5 | |||||||
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AS-Peak Resource Report Resource Website 1+ mentions |
AS-Peak (RRID:SCR_000380) | ASPeak | software resource | A software that utilizes a peak detection algorithm to identify RNA-protein binding sites. | rna, peak detection, protein, binding, site, algorithm, analysis |
is listed by: OMICtools has parent organization: SourceForge |
PMID:23929032 | Free, Available for download, Freely available | OMICS_00566 | https://omictools.com/aspeak-tool | SCR_000380 | 2026-07-25 12:04:43 | 2 | ||||||
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TOPPAS Resource Report Resource Website 1+ mentions |
TOPPAS (RRID:SCR_000533) | software resource | A graphical user interface (GUI) for rapid composition of HPLC-MS analysis workflows. Workflow construction is reduced to drag-and-drop of analysis tools and adding connections in between. | gui, graphical user interface, analysis, hplc-ms, workflow |
is listed by: OMICtools has parent organization: SourceForge |
PMID:22583024 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_02640 | http://open-ms.sourceforge.net/workflow-integration/toppasworkflows/ | SCR_000533 | The OpenMS Proteomics Pipeline Assistant, TOPP Pipeline Assistant | 2026-07-25 12:04:47 | 1 | ||||||
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MetaDrug Resource Report Resource Website 1+ mentions |
MetaDrug (RRID:SCR_000461) | MetaDrug | commercial organization | A leading systems pharmacology solution that incorporates extensive manually curated information on biological effects of small molecule compounds. Predictive and analytical algorithms look at chemical compounds from different angles in one integrated workflow are available for: * Individual previously described compounds to look up their known information and predict currently unknown properties * Individual newly synthesized or isolated compounds to predict their properties from its structures * Compound libraries to extract known and predict new properties of individual compounds and perform their comparison and prioritization | pharmacology, compound, pathway, target, metabolite, prediction, toxicity, indication, metabolism, gene, protein, analysis, drug effect | is listed by: OMICtools | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01584 | SCR_000461 | 2026-07-25 12:04:46 | 1 | ||||||||
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Leadscope Resource Report Resource Website 10+ mentions |
Leadscope (RRID:SCR_014904) | software resource | Commercial developer of database and predictive model software tools used in chemical toxicity assessment. | predictive software, modeling, chemical toxicity, analysis | Commercial | SCR_014904 | 2026-07-25 12:08:09 | 31 | |||||||||||
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MetabolExpert Resource Report Resource Website 1+ mentions |
MetabolExpert (RRID:SCR_014908) | software resource | Software tool for initial estimation of the structural formula of metabolites, which might be formed by a substance in humans, animals or in plants. MetabolExpert is also capable of predicting the most common metabolic pathways in animals, exporting results to SDF and RDF format and graphical highlighting that empasizes the essence of metabolic reactions that occurred. | metabolites, metabolism, analysis, chemical, modeling, prediction | Commercial | SCR_014908 | 2026-07-25 12:08:07 | 3 | |||||||||||
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Bio-Rad: Bio-Plex 200 System Resource Report Resource Website 100+ mentions |
Bio-Rad: Bio-Plex 200 System (RRID:SCR_018026) | instrument resource | Suspension array system which offers protein and nucleic acid researchers multiplex assay solution permiting analysis of up to 100 biomolecules in single sample. | ABRF, suspension array reader, protein, nucleid acid, assay, analysis, instrument, equipment, Bio-Rad | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018026.pdf | https://rai.unam.mx/manuales/umyp_Manual_Bioplex.pdf | SCR_018026 | , Bio-Plex 200 System, Bio-Plex 200 Suspension Array System, BioRad suspension array reader | 2026-07-25 12:08:41 | 151 | ||||||||
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Luminex: 100 Flow Cytometry Analyzer System Resource Report Resource Website 10+ mentions |
Luminex: 100 Flow Cytometry Analyzer System (RRID:SCR_018025) | instrument resource | Flow cytometry analyzer system for individual labs that performs up to 100 different tests in single reaction volume and can use either magnetic beads or plain polystyrene beads. | ABRF, suspension array analyzer, flow cytometry, magnetic bead, polystyrene bead, analysis, Luminex Corporation, instrument, equipment |
is listed by: USEDit is related to: Thermo Fisher: Luminex 200 Instrument System |
https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018025.pdf | https://www.luminexcorp.com/research-luminex-100200/ | SCR_018025 | Luminex 100 System | 2026-07-25 12:08:38 | 17 | ||||||||
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Centre dEtude du Polymorphisme Humain Resource Report Resource Website 100+ mentions |
Centre dEtude du Polymorphisme Humain (RRID:SCR_008026) | institution | The Centre d''Etude du Polymorphisme Humain (CEPH) is a research laboratory, the main activities of which are the setting up, storage, processing and distribution of DNA collections for the identification of genetic factors conferring susceptibility to complex disorders. These collections are established in partnership and full collaboration with external French or international research groups. The Foundation currently hosts the CEPH reference panel, the HGDP panel (Human genome Diversity Cell Line Panel) and several collections amounting mid-2008 to more than 250 000 samples. The goal of CEPH is to understand complex multifactorial disorders necessitates the establishment of structures facilitating access to large and integrated collection of individuals, characterized by a large number of variables emanating from different technologies and platforms. To achieve this goal, CEPH facilitates the setting up of integrated analyses combining clinical, genetic and environmental data, for the identification of susceptibility factors to complex multifactorial disorders Additionally, CEHP allows the reception, storage, processing and distribution of biological sample collections. At the same time, it promotes and participates in the design and setting up of genetic studies: - in partnership and full collaboration with external research groups - giving access to a large number of variables - in a sufficient number of subjects - allowing large scale integrated analyses | environmental, genome, genetic, analysis, biological, cell, clinical, disorder, distribution, diversity, dna, human, individual, laboratory, polymorphism, process, procession, reception, research, storage, structure, subject, technology, variable | is related to: International AMD Genetics Consortium | Wikidata: Q5464989, nif-0000-10191, ISNI: 0000 0004 0639 125X, grid.417836.f | https://ror.org/01rje3r53 | SCR_008026 | CEPH | 2026-07-25 12:06:49 | 294 |
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