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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Integrated Nervous System Connectivity Resource Report Resource Website |
Integrated Nervous System Connectivity (RRID:SCR_006391) | NSC | data or information resource, data set | A data set of connectivity statements from BAMS, CoCoMac, BrainMaps, Connectome Wiki, the Hippocampal-Parahippocampal Table of Temporal-Lobe.com, and Avian Brain Circuitry Database. The data set lists which brain sites connectivity is to and from, the organism connectivity is mapped in, and journal references. | connectivity, nervous system, macaque, brain, bird, data set |
uses: Avian Brain Circuitry Database uses: Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat uses: Connectome Wiki uses: BrainMaps.org uses: CoCoMac uses: Brain Architecture Management System uses: BlueBrain Bluima Connectivity is used by: NIF Data Federation has parent organization: Integrated |
Data are licensed by their respective owners, Use and distribution is subject to the terms of use by the original resource | nif-0000-07732 | https://legacy.neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-8 https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-8, http://neuinfo.org/nif/nifgwt.html?query=nif-0000-07732, https://www.neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nif-0000-07732-1 | SCR_006391 | NIF Integrated Nervous System Connectivity View, Neuroscience Information Framework Integrated Nervous System Connectivity, Integrated NSC View, Integrated NSC, NIF NSC, NIF Integrated NSC, Integrated Nervous System Connectivity View, Nervous System Connectivity | 2026-07-27 09:32:32 | 0 | ||||||
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CellTax vignette Resource Report Resource Website 1+ mentions |
CellTax vignette (RRID:SCR_017000) | data or information resource, data set | Cellular Taxonomy of Mouse Visual Cortex by analyzing gene expression patterns at single cell level. Construction of cellular taxonomy of one cortical region, primary visual cortex, in adult mice done on basis of single cell RNA sequencing. | data, classification, cell, type, mammalian, brain, cellular, taxonomy, mouse, visual, cortex, gene, expression, pattern, cortical, region |
is related to: Allen Brain Atlas API is related to: Allen Mouse Brain Reference Atlas is related to: Allen Cell Types Database has parent organization: Allen Institute for Brain Science has parent organization: Allen Brain Atlas |
Allen Institute for Brain Science ; NEI R01 EY023173; NIMH U01 MH105982 |
PMID:26727548 | Free, Public | SCR_017000 | Cellular Taxonomy of the Mouse Visual Cortex, Cellular Taxonomy of the Mouse Visual Cortex Allen Institue for Brain Science | 2026-07-27 09:35:28 | 3 | |||||||
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Neuroscience Education Resources Virtual Encycloportal Resource Report Resource Website |
Neuroscience Education Resources Virtual Encycloportal (RRID:SCR_002897) | NERVE | data or information resource, narrative resource, video resource, training material | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 17, 2013. Society for Neuroscience (SfN) provides this Web site, Neuroscience Education Resources Virtual Encycloportal (NERVE), to advance neuroscience teaching and educational efforts. SfN is a nonprofit association of more than 38,000 researchers and professionals, believes K-12 educators and vital partners for engaging the next generation of researchers. NERVE gives access to information and tools for teaching about the nervous system and related health issues. The goal of NERVE is to provide a gateway to credible information from government, nonprofit and other respected sources. Society scientists and educators have reviewed information for appropriateness but responsibility for content remains that of the originating author or organizations. NERVE gives access to information and tools for teaching about the nervous system and related health issues. | educate, education, brain, brain awareness, concepts, depression, disease, disorder, health, hearing, information, injury, issue, k-12, memory, movement, nerve, nervous system, neurological, neuroscience, parkinson's, science, scientist, sleep, spinal cord, teach, teaching, tool, trauma, vision | The Society for Neuroscience | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-25827 | SCR_002897 | Neuroscience Education Resources Virtual Encycloportal | 2026-07-28 09:40:41 | 0 | |||||||
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Wellesley College Neuroscience Resource Report Resource Website |
Wellesley College Neuroscience (RRID:SCR_002734) | data or information resource, organization portal, department portal, portal | Neuroscience was implemented as a new interdisciplinary major in 1999, replacing the Psychobiology Program and providing a base of experiences in biology, chemistry and psychology. Our students benefit from being able to work in small classes and to experience investigative lab experiences even in their introductory courses. Wellesley's neuroscience majors graduate with a liberal arts background coupled with sufficient concentration in this specialized field to be competitive among students coming from exclusively research-oriented institutions. The best proofs of the success of this approach are its products: * 60% of our graduates proceed to medical school; * 15% of our graduates continue on with graduate work in neuroscience, psychology, or neuropsychology; * 10% of our graduates pursue careers that intersect with neuroscience - for example, patent law or work in the biotech industry. Neuroscience is the study of the structure and function of neurons and how they are assembled to produce behaviors. This topic uses a multidisciplinary approach that extends from the molecular, through the cellular, and to the behavioral level. | function, behavior, behavioral, biology, brain, cellular, chemistry, medical, molecular, neuron, neuroscience, psychobiology, psychology, structure, undergraduate | Free | nif-0000-24036 | SCR_002734 | Wellesley Neuroscience | 2026-07-28 09:40:31 | 0 | |||||||||
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Gene Expression Nervous System Atlas Resource Report Resource Website 100+ mentions |
Gene Expression Nervous System Atlas (RRID:SCR_002721) | GENSAT | organism supplier, biomaterial supply resource, material resource | Gene expression data and maps of mouse central nervous system. Gene expression atlas of developing adult central nervous system in mouse, using in situ hybridization and transgenic mouse techniques. Collection of pictorial gene expression maps of brain and spinal cord of mouse. Provides tools to catalog, map, and electrophysiologically record individual cells. Application of Cre recombinase technologies allows for cell-specific gene manipulation. Transgenic mice created by this project are available to scientific community. | molecular neuroanatomy resource, gene expression, cre mice, rodent, adult mouse, development, developing mouse, histology, annotation, central nervous system, in situ hybridization, mutant mouse strain, brain, spinal cord, transgenic bac-egfp reporter, bac-cre recombinase driver mouse line, transgenic mouse, young mouse, genetics, neurology, bac, transgenic, histology, annotation, bioinformatics, FASEB list |
is used by: NIF Data Federation is listed by: One Mind Biospecimen Bank Listing is listed by: re3data.org is related to: Integrated Brain Gene Expression is related to: VisiGene Image Browser is related to: aGEM has parent organization: Rockefeller University; New York; USA is parent organization of: Gensat Cre-Mice |
NIH ; NIH Blueprint for Neuroscience Research ; NINDS N01 NS02331 |
Free, Freely available | nif-0000-00130 | http://www.gensat.org/index.html | SCR_002721 | Gene Expression Nervous System Atlas, GENSAT | 2026-07-28 09:40:30 | 380 | |||||
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National Resource Center for Cephalopods Resource Report Resource Website 1+ mentions |
National Resource Center for Cephalopods (RRID:SCR_002864) | NRCC | organism supplier, biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 17, 2013. The center serves the biomedical research community's increased needs for alternative invertebrate models by maintaining a consistent year-round supply of live cephalopod mollusks. These animals are suitable for a wide range of physiological and molecular biological investigations. Investigations are being conducted in the area of life history related to improved animal husbandry. Further studies focus on improving culture system design through development of computer automation and innovative water filtration technology. Current biomedical research on cephalopods includes neurophysiology of the giant axon; anatomy and neurophysiology of the equilibrium receptor organ as a comparative model of the vestibular system of invertebrates; chemoreception, basic nutrition, and protein metabolism; cellular receptor function; and brain, behavior, and learning. Services Provided: The center has built a computer-automated, environmentally controlled, recirculating seawater laboratory for the purpose of culturing cephalopods. The tank systems can be used to conduct a variety of experiments never before possible with cephalopods. Visiting researchers have access to dedicated facilities, including wet and dry laboratory space, office space, computer support and accommodations, as well as priority access to all available live animal resources. Off-site investigators can have live animals, dissected animal tissues/body fluids from all life stages, and a variety of molecular reagents (gene libraries and clones) delivered year-round. Staff expertise and an extensive literature library are available. All life stages of the squid (Sepioteuthis lessoniana) and the common cuttlefish (Sepia officinalis) are available year-round from laboratory culture populations. The sepiolid squid (Euprymna scolopes) can also be cultured on request. The squid Lolliguncula brevis is available year-round from local waters; the squids Loligo opalescens, L. pealeii, and L. plei can be obtained seasonally on request. The chambered nautilus, Nautilus pompilius, and Octopus bimaculoides are available on request. Animal costs vary by species and size. Any tissue or body fluid from these animals can also be provided. Fees for special services are negotiated on a case-by-case basis. | euprymna scolopes, function, gene, anatomy, animal, axon, behavior, biological, biomedical, brain, cellular, cephalopod mollusk, chemoreception, clone, culture, cuttlefish, invertebrate, inverteprate, laboratory, learning, lolliguncula brevis, metabolism, model, molecular, nautilus pompilius, neurophysiology, nutrition, octopus bimaculoides, organ, physiological, protein, reagent, receptor, research, sepia officinalis, sepiolid squid, sepioteuthis lessoniana, squid | has parent organization: University of Texas System; Texas; USA | National Institutes of Health ; National Center for Research Resources ; Texas Institute of Oceanography |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-25474 | SCR_002864 | National Resource Center for Cephalopods | 2026-07-28 09:40:32 | 3 | ||||||
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NeuronDB Resource Report Resource Website 10+ mentions |
NeuronDB (RRID:SCR_003105) | NeuronDB | service resource, data or information resource, data analysis service, database, production service resource, analysis service resource | Database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments. | NMDA, LTP, brain, cellular, cerebellum, cortex, dendrite, human, invertebrate, ion channel, molecular, mouse, neuroinformatics, neuron, neuronal property, neurotransmitter receptor, neurotransmitter substance, olfactory, physiology, rat, receptor, retina, voltage gated conductance, rodent, rat, non-human animal |
is used by: NIF Data Federation is listed by: Biositemaps is related to: ModelDB is related to: Integrated Manually Extracted Annotation has parent organization: Yale University; Connecticut; USA works with: MicrocircuitDB |
Human Brain Project ; Multidisciplinary University Research Initiative (MURI) ; NIDCD RO1 DC 009977 |
PMID:17510162 PMID:10223520 |
Free, Available for download, Freely available | nif-0000-00054 | https://bioregistry.io/registry/neurondb | SCR_003105 | Neuron DB, Neuron database, Neuron DataBase | 2026-07-28 09:40:37 | 10 | ||||
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Brainscape Resource Report Resource Website 1+ mentions |
Brainscape (RRID:SCR_002962) | Brainscape | service resource, data or information resource, data repository, image repository, data analysis service, storage service resource, database, production service resource, analysis service resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on May 23, 2013. Database for resting state functional connectivity studies. Functional connectivity has shown tremendous promise in mapping the intrinsic functional topography of the brain, evaluating neuroanatomical models, and investigating neurological and psychiatric disease. Brainscape includes a repository of public and private data and an analysis engine for exploring the correlation structure of spontaneous fluctuations in the fMRI BOLD signal. (DICOM data is the image format that can be uploaded.) With Brainscape you can upload, analyze, and share your own data. You can search for, download, and analyze studies in the repository of shared data. The analysis engine works by selecting one or more studies, typing in the coordinates of a brain region of interest, and the seed-region correlation engine computes the correlation structure across the whole brain. (T1, T2 and EPI data are the scan types Brainscape can process.) You decide who can access your data. You can keep it to yourself, share with select colleagues, or share it with everyone. The Brainscape database and analysis tools are open source and freely available. | functional connectivity, fmri bold signal, brain, neuroanatomy, region of interest, resting state, fmri, analysis, processing, dicom, dicom data, t1, t2, epi data, 4-dimensional floating point, raw, statistical comparison, functional topography, neurological, psychiatric, disease, mri, functional, statistical operation, correlation |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps has parent organization: University of California at San Diego; California; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00501 | SCR_002962 | 2026-07-28 09:40:35 | 2 | ||||||||
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CBU Imaging Wiki Resource Report Resource Website 50+ mentions |
CBU Imaging Wiki (RRID:SCR_003014) | CBU Imaging Wiki | data or information resource, topical portal, portal | Portal where neuroimaging studies are carried out using a Siemens 3T Tim Trio Magnetic Resonance Imaging (or MRI) scanner that is wholly dedicated to studies in Cognitive Neuroscience. From emotions and memories to language and learning, functional neuroimaging is being applied in many different areas of Cognitive Neuroscience. In many cases, this research relies upon support from healthy volunteers although neuroimaging studies are also being conducted in various clinical populations, including depression, anxiety, Parkinson's disease and Alzheimer's disease. | neuroimaging, cognitive neuroscience, mri, scanner, neuroscience, emotion, memory, language, learning, functional neuroimaging, clinical, population, human, analysis, software, disease, brain, imaging, fmri, cognition |
is related to: FslAtlasIntegration has parent organization: MRC Cognition and Brain Sciences Unit is parent organization of: MNI brain and the Talairach atlas is parent organization of: MNI brain and the Talairach atlas |
Depressive Disorder, Anxiety, Parkinson's disease, Alzheimer's disease | MRC | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30307 | SCR_003014 | CBUImaging, MRC CBU Imaging Wiki, MRC Cognition and Brain Sciences Unit Imaging Wiki, Cognition and Brain Sciences Unit Imaging Wiki | 2026-07-28 09:40:34 | 58 | |||||
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BMAP cDNA Resources Resource Report Resource Website 1+ mentions |
BMAP cDNA Resources (RRID:SCR_002973) | BMAP Resources | service resource, resource, material service resource, data or information resource, production service resource, biomaterial manufacture, topical portal, portal | As part of BMAP gene discovery efforts, mouse brain cDNA libraries and Expressed Sequence Tags (ESTs) have been generated. Through this project a BMAP mouse brain UniGene set consisting of over 24,000 non-redundant members of unique clusters has been developed from EST sequencing of more than 50,000 cDNA clones from 10 regions of adult mouse brain, spinal cord, and retina (http://brainEST.eng.uiowa.edu/). In 2001, NIMH along with NICHD, NIDDK, and NIDA, awarded a contract to the University of Iowa ( M.B. Soares, PI) to isolate full-length cDNA clones corresponding to genes expressed in the developing mouse nervous system and determine their full-coding sequences. The BMAP mouse brain EST sequences can be accessed at NCBI's dbEST database (http://www.ncbi.nlm.nih.gov/dbEST/). Arrayed sets of BMAP mouse brain UniGenes and cDNA libraries, and individual BMAP cDNA clones can be purchased from Open Biosystems, Huntsville, AL (http://www.openbiosystems.com | brain, spinal cord, retina, gene, cdna, library, est, cluster, clone, nervous system, dbest, database, gene discovery, cdna library, expressed sequence tag, coding sequence, adult |
is related to: Nucleotide database is related to: Open Biosystems has parent organization: BMAP - Brain Molecular Anatomy Project |
NINDS ; NICHD ; NIDDK ; NIDA ; NIMH N01 MH80014 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30154 | SCR_002973 | Brain Molecular Anatomy Project cDNA Resources | 2026-07-28 09:40:35 | 2 | ||||||
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Blue Brain Project Resource Report Resource Website 10+ mentions |
Blue Brain Project (RRID:SCR_002994) | Blue Brain | data or information resource, topical portal, portal | A Swiss-led project with the aim of reverse engineering the mammalian brain and achieving a complete virtual human brain. The researchers have demonstrated the validity of their method by developing a realistic model of a rat cortical column, consisting of about 10,000 neurons. The eventual goal is to simulate systems of millions and hundreds of millions of neurons. The virtual brain will be an exceptional tool giving neuroscientists a new understanding of the brain and a better understanding of neurological diseases. In five years of work, Henry Markram's team has perfected a facility that can create realistic models of one of the brain's essential building blocks. This process is entirely data driven and essentially automatically executed on the supercomputer. Meanwhile the generated models show a behavior already observed in years of neuroscientific experiments. These models will be basic building blocks for larger scale models leading towards a complete virtual brain. | brain, neuron, microcircuit, simulation, cortex, cortical column, model |
is related to: NeuroCurator has parent organization: Ecole Polytechnique Federale de Lausanne; Lausanne; Switzerland is parent organization of: ChannelPedia provides: Blue Brain Cell Atlas |
Neurological disease | nif-0000-30208 | SCR_002994 | Bluebrain | 2026-07-28 09:40:34 | 16 | |||||||
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VisiGene Image Browser Resource Report Resource Website 50+ mentions |
VisiGene Image Browser (RRID:SCR_003341) | VisiGene | analysis service resource, service resource, data or information resource, data repository, image repository, data analysis service, database, image collection, production service resource, storage service resource | Virtual microscope for viewing in situ images that show where a gene is used in an organism, sometimes down to cellular resolution. The user can examine cell-by-cell as well as tissue-by-tissue expression patterns. Users can retrieve images that meet specific search criteria, then interactively zoom and scroll across the collection. Image set contributions are welcome. The following image collections are currently available for browsing: * High-quality high-resolution images of eight-week-old male mouse sagittal brain slices with reverse-complemented mRNA hybridization probes from the Allen Brain Atlas, courtesy of the Allen Institute for Brain Science * Mouse in situ images from the Jackson Lab Gene Expression Database (GXD) at MGI * Transcription factors in mouse embryos from the Mahoney Center for Neuro-Oncology * Mouse head and brain in situ images from NCBI''''s Gene Expression Nervous System Atlas (GENSAT) database * Xenopus laevis in situ images from the National Institute for Basic Biology (NIBB) XDB project | molecular neuroanatomy resource, midbrain, brain, in situ, gene, theiler stage, visualization, cellular resolution, mrna hybridization, in situ hybridization, male, nieuwkoop, faber stage, gene expression, embryonic mouse, adult mouse |
is related to: Gene Expression Database is related to: Allen Institute for Brain Science is related to: Gene Expression Nervous System Atlas has parent organization: University of California at Santa Cruz; California; USA |
PMID:18996895 PMID:17142222 |
Free, Freely available | nif-0000-00198 | SCR_003341 | 2026-07-28 09:40:40 | 58 | |||||||
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CCHMC Pediatric Brain Templates Resource Report Resource Website 1+ mentions |
CCHMC Pediatric Brain Templates (RRID:SCR_003276) | Pediatric Brain Templates | image collection, data or information resource, atlas, reference atlas | Brain imaging data collected from a large population of normal, healthy children that have been used to construct pediatric brain templates, which can be used within statistical parametric mapping for spatial normalization, tissue segmentation and visualization of imaging study results. The data has been processed and compiled in various ways to accommodate a wide range of possible research approaches. The templates are made available free of charge to all interested parties for research purposes only. When processing imaging data from children, it is important to take into account the fact that the pediatric brain differs significantly from the adult brain. Therefore, optimized processing requires appropriate reference data be used because adult reference data will introduce a systematic bias into the results. We have shown that, in the in the case of spatial normalization, the amount of non-linear deformation is dramatically less when a pediatric template is used (left, see also HBM 2002; 17:48-60). We could also show that tissue composition is substantially different between adults and children, and more so the younger the children are (right, see also MRM 2003; 50:749-757). We thus believe that the use of pediatric reference data might be more appropriate. | brain, child, human, normal, pediatric, spatial normalization, template, tissue segmentation, visualization, young human, neuroimaging | is related to: SPM | Normal, Healthy | Free, Freely available | nif-0000-01274 | https://jiscmail.ac.uk/cgi-bin/wa-jisc.exe?A2=SPM;981fd215.02 | SCR_003276 | 2026-07-28 09:40:40 | 3 | ||||||
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Research Network in Early Experience and Brain Development Resource Report Resource Website 10+ mentions |
Research Network in Early Experience and Brain Development (RRID:SCR_003271) | Research Network on Early Experience and Brain Development | image collection, data or information resource, topical portal, portal | Portal on how the experiences of early childhood are incorporated into the structures of the developing brain, and how, in turn, those changes in the structures of the brain influence behavior. The network explores how knowledge of brain development can guide us in understanding of behavioral development and vice versa. It focuses specifically on sensitive periods and neural plasticity, the reciprocal phenomena whereby (a) the brain is negatively affected if certain experiences fail to occur within a certain time period, and (b) the brain is altered by experience at virtually any point in the life span. Here we consider not only how the structure of experience is incorporated into the structure of the brain, but also how this knowledge can influence the decisions we make about intervening in the lives of children. Research and other projects conducted by the Network fall into four broad categories: * Effects of early experience on brain development * New methods for studying brain-behavior relations * Comparative studies of early brain-behavioral development * Impact on public policy: Educating educators and the media RESOURCES NimStim Face Stimulus Set The Research Network on Early Experience and Brain Development has developed a battery of 646 facial expression stimuli for use in its own and other studies of face and emotion recognition. Images include the following expressions, displayed by a variety of models of various genders and races: fearful, happy, sad, angry, surprised, calm, neutral, disgusted. They are making these stimuli available to the public free of charge with registration and acceptance of the terms and conditions to use the stimulus set. | brain, development, developing brain, behavior, early experience, brain development, facial expression stimuli, emotion, stimuli, facial expression, young human, child |
has parent organization: University of California at Davis; California; USA has parent organization: University of Pittsburgh; Pennsylvania; USA has parent organization: Oregon Health and Science University; Oregon; USA has parent organization: University of California at San Francisco; California; USA has parent organization: University of Maryland; Maryland; USA has parent organization: Stanford University; Stanford; California has parent organization: Vanderbilt University; Tennessee; USA has parent organization: Brandeis University; Massachusetts; USA has parent organization: University of California at Los Angeles; California; USA has parent organization: Tulane University; Louisiana; USA has parent organization: University of Minnesota Twin Cities; Minnesota; USA |
James S. McDonnell Foundation ; MacArthur Foundation |
Free, Freely available | nif-0000-31447 | http://www.macbrain.org/faces/indexhtm | SCR_003271 | Research Network in Early Experience Brain Development | 2026-07-28 09:40:39 | 45 | |||||
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Common Upper Mammalian Brain Ontology Resource Report Resource Website |
Common Upper Mammalian Brain Ontology (RRID:SCR_003629) | CUMBO | controlled vocabulary, data or information resource, ontology | Ontology of formal definitions (i.e., machine processable) for the types of structures commonly described in neuroanatomy. | neuroanatomy, brain |
is related to: Linked Neuron Data has parent organization: International Neuroinformatics Coordinating Facility has parent organization: NeuroLex |
nlx_157809 | http://neurolex.org/wiki/Cumbo_terms | SCR_003629 | INCF-CUMBO, Common Upper Mammalian Brain Ontology (CUMBO) | 2026-07-28 09:40:45 | 0 | |||||||
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Brain Atlas of the Mozambique Tilapia Oreochromis mossambicus Resource Report Resource Website |
Brain Atlas of the Mozambique Tilapia Oreochromis mossambicus (RRID:SCR_003501) | Tilapia Brain Atlas | service resource, data or information resource, data repository, image repository, atlas, storage service resource | Digital three-dimensional MRI atlas of the Mozambique tilapia brain, supported by Nissl staining. Images were viewed and analyzed in all orientations (transverse, sagittal, and horizontal) and manually labelled to reveal structures in the olfactory bulb, telencephalon, diencephalon, optic tectum, and cerebellum. The MRI atlas data (16-bit int) and delineation data (8-bit int) are provided in Raw data (file_name.raw), Amira format (file_name.am) and in Analyze format (file_name.img and file_name.hdr). | mri, brain, head, computed tomography, cichlid fish, nissl stain, transverse, sagittal, horizontal, olfactory bulb, telencephalon, diencephalon, optic tectum, cerebellum, fish model, histology, 3d, nuclei, delineation, sequence atlas, resolution atlas, dimensions atlas, skull | has parent organization: Instituto Superior de Psicologia Aplicada; Lisbon; Portugal | PMID:22984463 | Account required | nlx_157637 | SCR_003501 | Mozambique Tilapia Brain Atlas | 2026-07-28 09:40:45 | 0 | ||||||
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MGH-USC Human Connectome Project Resource Report Resource Website 100+ mentions |
MGH-USC Human Connectome Project (RRID:SCR_003490) | MGH/UCLA HCP | service resource, material service resource, data or information resource, production service resource, instrument manufacture, portal | A multi-center project comprising two distinct consortia (Mass. Gen. Hosp. and USC; and Wash. U. and the U. of Minn.) seeking to map white matter fiber pathways in the human brain using leading edge neuroimaging methods, genomics, architectonics, mathematical approaches, informatics, and interactive visualization. The mapping of the complete structural and functional neural connections in vivo within and across individuals provides unparalleled compilation of neural data, an interface to graphically navigate this data and the opportunity to achieve conclusions about the living human brain. The HCP is being developed to employ advanced neuroimaging methods, and to construct an extensive informatics infrastructure to link these data and connectivity models to detailed phenomic and genomic data, building upon existing multidisciplinary and collaborative efforts currently underway. Working with other HCP partners based at Washington University in St. Louis they will provide rich data, essential imaging protocols, and sophisticated connectivity analysis tools for the neuroscience community. This project is working to achieve the following: 1) develop sophisticated tools to process high-angular diffusion (HARDI) and diffusion spectrum imaging (DSI) from normal individuals to provide the foundation for the detailed mapping of the human connectome; 2) optimize advanced high-field imaging technologies and neurocognitive tests to map the human connectome; 3) collect connectomic, behavioral, and genotype data using optimized methods in a representative sample of normal subjects; 4) design and deploy a robust, web-based informatics infrastructure, 5) develop and disseminate data acquisition and analysis, educational, and training outreach materials. | human, structural, functional, neural, white matter, fiber, brain, in vivo, genomic, neuroimaging, visualization, neuroanatomy, genotype, connectivity, connectivity model, neural pathway, phenomic, connectomics, quantification, scanner, eeg, meg, shape analysis, spatial transformation, diffusion spectrum, q-ball, tensor metric, fiber tracking, connectome, behavior, scanner, web resource, diffusion spectrum, q-ball, tensor metric, quantification, shape analysis, spatial transformation, fiber tracking, FASEB list |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps has parent organization: Laboratory of Neuro Imaging has parent organization: Harvard Medical School; Massachusetts; USA has parent organization: NIH Human Connectome Project is parent organization of: USC Multimodal Connectivity Database |
Normal | NIH ; NIH Blueprint for Neuroscience Research |
Open unspecified license, (BSD/MIT-Style), LONI Software License, Public Domain | nif-0000-35789 | http://www.nitrc.org/projects/hcp_mgh-ucla | SCR_003490 | Harvard/MGH-UCLA Human Connectome Project, Harvard/MGH-UCLA Consortium: Human Connectome Project, HCP Harvard/MGH-UCLA, MGH/UCLA Consortium: Human Connectome Project | 2026-07-28 09:40:48 | 165 | ||||
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brainfacts.org Resource Report Resource Website 1+ mentions |
brainfacts.org (RRID:SCR_003514) | blog, narrative resource, data or information resource, topical portal, portal, training material | A web portal that aggregates information and educational materials about the brain and brain diseases. Resources such as videos, key brain concepts, and hands-on activities may be used and shared with the public. | brain, nervous system, neuroscience, research, educator, k-12, video, autism, parkinson's disease, public material |
is related to: SfN Brain Briefings has parent organization: Society for Neuroscience |
Parkinson's disease, Autism | Kavli Foundation ; Gatsby Charitable Foundation |
Public | nlx_144565 | SCR_003514 | brain facts, brainfacts, BrainFacts.org | 2026-07-28 09:40:43 | 8 | ||||||
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BrainTrap: Fly Brain Protein Trap Database Resource Report Resource Website 1+ mentions |
BrainTrap: Fly Brain Protein Trap Database (RRID:SCR_003398) | BrainTrap | data or information resource, database, d spatial image | This database contains information on protein expression in the Drosophila melanogaster brain. It consists of a collection of 3D confocal datasets taken from EYFP expressing protein trap Drosophila lines from the Cambridge Protein Trap project. Currently there are 884 brain scans from 535 protein trap lines in the database. Drosophila protein trap strains were generated by the St Johnston Lab and the Russell Lab at the University of Cambridge, UK. The piggyBac insertion method was used to insert constructs containing splice acceptor and donor sites, StrepII and FLAG affinity purification tags, and an EYFP exon (Venus). Brain images were acquired by Seymour Knowles-Barley, in the Armstrong Lab at the University of Edinburgh. Whole brain mounts were imaged by confocal microscopy, with a background immunohistochemical label added to aid the identification of brain structures. Additional immunohistochemical labeling of the EYFP protein using an anti-GFP antibody was also used in most cases. The trapped protein signal (EYFP / anti-GFP), background signal (NC82 label), and the merged signal can be viewed on the website by using the corresponding channel buttons. In all images the trapped protein / EYFP signal appears green and the background / NC82 channel appears magenta. Original .lsm image files are also available for download. | brain, exon, expression, 3d confocal, affinity, antibody, dataset, immunohistochemical, microscopy, image, protein, protein-trap, gene | has parent organization: University of Edinburgh; Scotland; United Kingdom | EPSRC ; British society for Developmental Biology ; Society for Experimental Biology ; Virtual Fly Brain e-Science Institute Theme ; BBSRC ; MRC |
PMID:20624714 | Free, Freely available | nif-0000-32989 | http://fruitfly.inf.ed.ac.uk/braintrap/ | SCR_003398 | Fly Brain Protein Trap Database, Brain Trap | 2026-07-28 09:40:41 | 1 | ||||
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NIH MRI Study of Normal Brain Development Resource Report Resource Website 1+ mentions |
NIH MRI Study of Normal Brain Development (RRID:SCR_003394) | Pediatric MRI Study | data or information resource, data set, narrative resource, experimental protocol | Data sets of clinical / behavioral and image data are available for download by qualified researchers from a seven year, multi-site, longitudinal study using magnetic resonance technologies to study brain maturation in healthy, typically-developing infants, children, and adolescents and to correlate brain development with cognitive and behavioral development. The information obtained in this study is expected to provide essential data for understanding the course of normal brain development as a basis for understanding atypical brain development associated with a variety of developmental, neurological, and neuropsychiatric disorders affecting children and adults. This study enrolled over 500 children, ranging from infancy to young adulthood. The goal was to study each participant at least three times over the course of the project at one of six Pediatric Centers across the United States. Brain MR and clinical/behavioral data have been compiled and analyzed at a Data Coordinating Center and Clinical Coordinating Center. Additionally, MR spectroscopy and DTI data are being analyzed. The study was organized around two objectives corresponding to two age ranges at the time of enrollment, each with its own protocols. * Objective 1 enrolled children ages 4 years, 6 months through 18 years (total N = 433). This sample was recruited across the six Pediatric Study Centers using community based sampling to reflect the demographics of the United States in terms of income, race, and ethnicity. The subjects were studied with both imaging and clinical/behavioral measures at two year intervals for three time points. * Objective 2 enrolled newborns, infants, toddlers, and preschoolers from birth through 4 years, 5 months, who were studied three or more times at two Pediatric Study Centers at intervals ranging from three months for the youngest subjects to one year as the children approach the Objective 1 age range. Both imaging and clinical/behavioral measures were collected at each time point. Participant recruitment used community based sampling that included hospital venues (e.g., maternity wards and nurseries, satellite physician offices, and well-child clinics), community organizations (e.g., day-care centers, schools, and churches), and siblings of children participating in other research at the Pediatric Study Centers. At timepoint 1, of those enrolled, 114 children had T1 scans that passed quality control checks. Staged data release plan: The first data release included structural MR images and clinical/behavioral data from the first assessments, Visit 1, for Objective 1. A second data release included structural MRI and clinical/behavioral data from the second visit for Objective 1. A third data release included structural MRI data for both Objective 1 and 2 and all time points, as well as preliminary spectroscopy data. A fourth data release added cortical thickness, gyrification and cortical surface data. Yet to be released are longitudinally registered anatomic MRI data and diffusion tensor data. A collaborative effort among the participating centers and NIH resulted in age-appropriate MR protocols and clinical/behavioral batteries of instruments. A summary of this protocol is available as a Protocol release document. Details of the project, such as study design, rationale, recruitment, instrument battery, MRI acquisition details, and quality controls can be found in the study protocol. Also available are the MRI procedure manual and Clinical/Behavioral procedure manuals for Objective 1 and Objective 2. | young human, child, pediatric, experimental protocol, brain, brain development, development, mri, minc, clinical, behavior, anatomical mri, diffusion tensor imaging, mr spectroscopy, adolescent, clinical data, behavioral data, data visualization software, clinical measure, behavioral measure, physical neurological examination, behavioral rating, neuropsychological testing, structured psychiatric interview, hormonal measure, image collection, neonate, clinical neuroinformatics, dicom, minc2, magnetic resonance, nifti |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is listed by: NIH Data Sharing Repositories is related to: NIH Data Sharing Repositories has parent organization: National Institutes of Health |
Healthy, Normal | NICHD ; NIDA ; NIMH ; NINDS ; NIH Blueprint for Neuroscience Research |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00201 | http://www.bic.mni.mcgill.ca/nihpd/info/, https://nihpd.crbs.ucsd.edu/nihpd/info/index.html | SCR_003394 | NIH Pediatric MRI Data Repository, Pediatric MRI Data Repository | 2026-07-28 09:40:41 | 6 |
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