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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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meta Resource Report Resource Website 50+ mentions |
meta (RRID:SCR_019055) | software toolkit, software resource | Software general R package providing standard methods for meta analysis. | Meta analysis, standard methods, meta in R, analysis, statistics |
is listed by: CRAN is related to: dmetar has parent organization: University of Freiburg; Baden-Wurttemberg; Germany |
DOI:10.1007/978-3-319-21416-0 | Free, Available for download, Freely available | https://cran.r-project.org/web/packages/meta/meta.pdf | SCR_019055 | meta in R | 2026-07-28 09:44:54 | 61 | |||||||
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CellChat Resource Report Resource Website 500+ mentions |
CellChat (RRID:SCR_021946) | software toolkit, software resource | Software R toolkit for inference, visualization and analysis of cell-cell communication from single cell data.Quantitatively infers and analyzes intercellular communication networks from single-cell RNA-sequencing data. Predicts major signaling inputs and outputs for cells and how those cells and signals coordinate for functions using network analysis and pattern recognition approaches. Classifies signaling pathways and delineates conserved and context specific pathways across different datasets. | inference, visualization, analysis, cell-cell communication, single cell data, intercellular communication networks, single-cell RNA-sequencing data | NSF DMS1763272; Simons Foundation ; NIH U01 AR073159; NIGMS R01 GM123731; NIH P30 AR07504; Pew Charitable Trust ; LEO Foundation ; UC Irvine ; Howard Hughes Medical Institute |
PMID:33597522 | Free, Available for download, Freely available | http://www.cellchat.org/ | SCR_021946 | 2026-07-28 09:45:21 | 536 | ||||||||
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Sequence Search and Alignment by Hashing Algorithm Resource Report Resource Website 1+ mentions |
Sequence Search and Alignment by Hashing Algorithm (RRID:SCR_000544) | SSAHA2 | source code, software resource | A program designed for the efficient mapping of sequence reads onto genomic references. The software is capable of reading most sequencing platforms and giving a range of outputs are supported. | sequence, genomic, analysis, search, alignment, algorithm, mapping, bio.tools |
is listed by: OMICtools is listed by: bio.tools is related to: SMALT has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
PMID:11591649 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:ssaha2, OMICS_00690, nlx_93831 | https://bio.tools/ssaha2 | SCR_000544 | ssaha2, ssaha, Sequence Search and Alignment by Hashing Algorithm | 2026-07-28 09:40:01 | 6 | |||||
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National Magnetic Resonance Facility at Madison Resource Report Resource Website 1+ mentions |
National Magnetic Resonance Facility at Madison (RRID:SCR_001449) | NMRFAM | access service resource, service resource, training resource | Provides access and developes NMR technology to advance range of applications and improves the efficiency, rigor and reproducibility of NMR data acquisition and analysis. Houses NMR spectrometers equipped with state-of-the-art probe technology and protocols to support acquisition of high-quality data. Spectrometers range from 500 MHz to 1100 MHz. Service is tailored to the needs of individual users and projects. Provides training and advice on experimental design, best practices for data acquisition, and data analysis. Experienced staff support users with training opportunities including workshops, video tutorials and protocols. | nmr spectrometer, structure, function, protein, rna, dynamics, complex, membrane protein, paramagnetic protein, metabolomics, analysis, spectroscopy, nucleic acid, automation, data analysis, macromolecule, small angle x-ray scattering, structural biology technology center | has parent organization: University of Wisconsin-Madison; Wisconsin; USA | NIGMS R24GM141526; NIGMS P41136463 |
Free, Freely Available | nlx_152672 | SCR_001449 | 2026-07-28 09:40:11 | 4 | |||||||
|
Hunter Genomic Facility Resource Report Resource Website |
Hunter Genomic Facility (RRID:SCR_001983) | access service resource, service resource, core facility | Facility which provides instruments and instrument resources for analyzing DNA, RNA, protein, and radio-labeled substances. | genomics, dna, rna, protein, analysis, core facility |
is listed by: Eagle I has parent organization: Hunter College; New York; USA |
Instruction required, Fee | nlx_156341 | http://hunter-cuny.eagle-i.net/i/00000136-7e34-9f73-949b-425080000000 | SCR_001983 | 2026-07-28 09:40:30 | 0 | ||||||||
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National Resource for Network Biology Resource Report Resource Website 1+ mentions |
National Resource for Network Biology (RRID:SCR_004259) | NRNB | training resource, biomedical technology research center | Biomedical technology research center that develops new algorithms, visualizations and conceptual frameworks to study biological networks at multiple levels and scales, from protein-protein and genetic interactions to cell-cell communication and vast social networks. They are developing freely available, open-source suite of software technology that broadly enables network-based visualization, analysis, and biomedical discovery for NIH-funded researchers. This software is enabling researchers to assemble large-scale biological data into models of networks and pathways and to use these networks to better understand how biological systems operate under normal conditions and how they fail in disease. The National Resource for Network Biology is organized around the following key components: Technology Research and Development, Driving Biomedical Projects, Outreach, Training and Dissemination of Tools. The NRNB supports several types of training events, including both virtual and live workshops; tutorials sessions for clinicians, biologists and bioinformaticians; presentations and demonstrations at conferences; online tutorials and webcasts; and annual symposium. | protein-protein interaction, interaction, cell, cell communication, network, model, pathway, biological system, disease, visualization, analysis, biomedical, computing and informatics technology center | has parent organization: University of California at San Diego; California; USA | NIGMS GM103504; NCRR RR031228 |
nlx_27231 | SCR_004259 | 2026-07-28 09:40:57 | 6 | ||||||||
|
NIH / NCRR Mass Spectrometry Resource Washington University in St. Louis Resource Report Resource Website 1+ mentions |
NIH / NCRR Mass Spectrometry Resource Washington University in St. Louis (RRID:SCR_009009) | Mass Spectrometry Resource, WU Mass Spectrometry Resource | training resource, biomedical technology research center | Biomedical technology research center that develops mass spectrometry-based tools for the study of proteins, lipids and metaboilites. These include biomarker identification, stable isotope mass spectrometry and the analysis of intact proteins. Our goals are: * to conduct basic research in the science of mass spectrometry * to establish collaborative research projects with scientists at WU and at other institutions * to provide a service in mass spectrometry * to educate and train students in mass spectrometry * to disseminate results of our research and descriptions of the subject of mass spectrometry | systems biology technology center, mass spectrometry, protein, lipid, metaboilite, biomarker, isotope, analysis | has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA | NIGMS ; NCRR 2P41RR00954 |
nlx_152688 | SCR_009009 | Mass Spectrometry Resource at Washington University in St. Louis, Washington University Mass Spectrometry Resource | 2026-07-28 09:42:25 | 1 | |||||||
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Beth Israel Deaconess Medical Center Genomics Proteomics Bioinformatics and Systems Biology Center Resource Report Resource Website |
Beth Israel Deaconess Medical Center Genomics Proteomics Bioinformatics and Systems Biology Center (RRID:SCR_009668) | BIDMC Genomics, Proteomics, Bioinformatics and Systems Biology Center | access service resource, service resource, core facility | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 27, 2023. Core provides services: RT PCR service, Gene expression profiling service, Proteomics analysis service, Bioinformatics and Systems Biology analyses, Next Generation Sequencing Service, Affymetrix Human and Mouse Gene 2.0 ST Arrays and 2.1 ST Arrayplates. Core proteomics facility for the Dana-Farber/Harvard Cancer Center. Workflows and algorithms for analysis of next-generation sequencing data including RNA-Seq, ChIP-Seq, Epigenetics-Seq and DNA seq, Comprehensive workflow for analysis of Microbiome sequencing data, Integrated systems biology analysis of transcriptome, miRNA, epigenome, metabolomics and proteomics data. Pipelines: MALDI Tissue imaging and targeted quantitative proteomics. | RT PCR, transcriptome, epigenome, metabolomics, profiling, assay, protein, expression, pathway, data, bioinformatics, analysis, next, generation, sequencing, human, mouse, array, tissue, imaging |
is listed by: Eagle I is related to: Beth Israel Deaconess Medical Center Labs and Facilities is related to: Harvard University Labs and Facilities has parent organization: Harvard University; Cambridge; Massachusetts |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156126 | http://www.bidmcgenomics.org/ | SCR_009668 | Beth Israel Deaconess Medical Center, BIDMC | 2026-07-28 09:42:28 | 0 | ||||||
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Dana-Farber Cancer Institute Molecular Biology Core Facility Resource Report Resource Website 1+ mentions |
Dana-Farber Cancer Institute Molecular Biology Core Facility (RRID:SCR_009754) | MBCF at DFCI | access service resource, service resource, core facility | Core offers services for genomic next-generation sequencing library preparation, sequencing and analysis applications including RNAseq, ChIPseq, ATACseq, CRISPR screening, whole genome methylation profiling, targeted resequencing, single-cell RNAseq, exome sequencing, and more. Performs bioinformatics analysis such as integration of multi-omics datasets or specialized analyses. Genomics core technology platforms include Illumina NovaSeq6000, NextSeq500s, MiSeqs, MiniSeq. High throughput sample preparation is performed on Beckman Coulter Biomek FX and i7 systems. Low throughput samples are prepared by technical staff. | Next generation sequencing, RNAseq, ChIPseq, ATACseq, CRISPR, analysis, dataset, genomics, ABRF |
is listed by: Eagle I is listed by: ABRF CoreMarketplace has parent organization: Dana-Farber Cancer Institute |
Open | nlx_156214, SCR_018264, ABRF_57 | https://coremarketplace.org/?FacilityID=57 | http://harvard.eagle-i.net/i/0000012a-2512-3484-5617-794280000000 | SCR_009754 | , Dana-Farber Cancer Institute Molecular Biology Core Facilities, DFCI Molecular Biology Core Facilities | 2026-07-28 09:42:24 | 1 | |||||
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Montana State University Bioinformatics Core Facility Resource Report Resource Website |
Montana State University Bioinformatics Core Facility (RRID:SCR_009937) | access service resource, service resource, core facility | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 27, 2023. Core for Microarray analysis, Database development, Systems biology analysis, Genome assembly, Pathway data analysis, Expression data analysis, Metagenomics analysis. To maintain equipment and software for bioinformatic research, promote bioinformatics education on the MSU campus, and provide training and support to biologists implementing bioinformatics tools in their research. | nucleic, acid, microarray, assay, database, development, analysis, genome, assembly, pathway, data, gene, expression, metagenomics |
is listed by: Eagle I has parent organization: Montana State University |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156405 | http://cores.montana.edu/bioinformatics/ | SCR_009937 | , Montana State University, core facility, MSU, Bioinformatics Core Laboratory | 2026-07-28 09:42:30 | 0 | |||||||
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Georgia Genomics and Bioinformatics Core at the University of Georgia Resource Report Resource Website 50+ mentions |
Georgia Genomics and Bioinformatics Core at the University of Georgia (RRID:SCR_010994) | GGBC | access service resource, service resource, training service resource, core facility | Core laboratory for nucleic acid sequencing and bioinformatics. Used for research support, education, and training. Services include genomic techniques and applications, sequencing technologies, and bioinformatics analyses, writting letters of support for grant applications submitted to funding agencies. GGBC operates multiple platforms for short-, long-, and single-molecule sequencing reads (i.e., Illumina MiSeq and NextSeq, PacBio Sequel, and Oxford Nanopore MinIon). | nucleic, acid, sequencing, labs, analysis, equipment, genomic, technique, analysis, grant, application |
is listed by: ScienceExchange is related to: University of Georgia Labs and Facilities has parent organization: University of Georgia; Georgia; USA |
SciEx_9234 | http://www.scienceexchange.com/facilities/georgia-genomics-facility-uga, http://www.scienceexchange.com/facilities/georgia-genomics-facility-uga | SCR_010994 | Georgia Genomics & Bioinformatics Core, Georgia Genomics and Bioinformatics Core at UGA, University of Georgia Genomics Facility, Georgia Genomics and Bioinformatics Core | 2026-07-28 09:42:56 | 71 | |||||||
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University of Salerno Laboratory of Molecular Medicine and Genomics Resource Report Resource Website |
University of Salerno Laboratory of Molecular Medicine and Genomics (RRID:SCR_011047) | UNISA LMMGe, UNISA, LMMGe, UNISA Laboratory of Molecular Medicine and Genomics, Laboratory of Molecular Medicine and Genomics | access service resource, service resource, core facility | Core equipped for structural and functional studies of genomes, includes equipment for next generation sequencing applications (Illumina HiSeq 1500, GAIIx and MiSeq, Life Technologies Ion Torrent PGM), RNA and microRNA expression profiling, array-based DNA methylation analyses and SNP genotyping (Illumina HiScan and Agilent High Resolution microarray scanners), informatics and bioinformatics (a server farm for genomics data computation and a high capacity data storage unit), fluorescence and confocal microscopy, long-term sample storage, cell culture, including a facility for generation and handling of viral vectors for gene transfer and gene therapy, access to a small animal facility for ''in vivo'' experimentations. Trained biotechnologists, molecular biologists and bioinformaticians handle all aspects related to experimental design, technical implementation and data analysis and storage. | genomes, sequencing, implementation, analysis, genotyping, cell culture, |
is listed by: ScienceExchange has parent organization: University of Salerno; Salerno; Italy |
Available to external user | SciEx_9722 | http://www.scienceexchange.com/facilities/laboratory-of-molecular-medicine-and-genomics | SCR_011047 | Laboratory of Molecular Medicine and Genomics, University of Salerno, UNISA, LMMGe | 2026-07-28 09:42:57 | 0 | ||||||
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University of Southern California School of Pharmacy Translational Research Laboratory Resource Report Resource Website |
University of Southern California School of Pharmacy Translational Research Laboratory (RRID:SCR_012253) | USC, School of Pharmacy, TRLab, Translational Research Lab, University of Southern California, School of Pharmacy | access service resource, service resource, core facility | Core is equipped with a wide variety of technologically advanced instruments essential for cutting edge biomedical discovery and therapeutic development research. TRLab is composed of two major units. The Computational Bioinformatics Unit houses graphic workstations and modeling programs that enable in silico virtual screening and rational drug design applications. The Therapeutic Screening Unit houses a number of specialized instruments that enable a broad range of automated and multiplexed biological analyses in a throughput manner. The core mission of the TRLab has been to provide investigators with a state-of-the-art technological platform and technical expertise to advance translational research endeavors in the School of Pharmacy and at USC. | immunobiology, Molecular biology, analysis, imaging, |
is listed by: ScienceExchange has parent organization: University of Southern California; Los Angeles; USA |
Available to external user | SciEx_11044 | http://www.scienceexchange.com/facilities/the-translational-research-laboratory | SCR_012253 | USC, Translational Research Lab, Translational Research Laboratory, TRLab, University of Southern California, School of Pharmacy | 2026-07-28 09:43:02 | 0 | ||||||
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University of Southern California Epigenome Center Data Production Facility Resource Report Resource Website |
University of Southern California Epigenome Center Data Production Facility (RRID:SCR_012476) | USC Epigenome Center, | access service resource, service resource, core facility | Core conducts genome-scale epigenetic and genetic data production and analysis, technology development, and epigenomic and population-based genomic research. | genome-scale epigenetic, genetic data production, analysis, technology development, epigenomic, population-based genomic research |
is listed by: ScienceExchange is related to: University of Southern California Labs and Facilities has parent organization: University of Southern California; Los Angeles; USA |
Available to external user | SciEx_206 | SCR_012476 | University of Southern California Epigenome Center Data Production Facility | 2026-07-28 09:43:06 | 0 | |||||||
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Vancouver Prostate Centre Laboratory for Advanced Genome Analysis Resource Report Resource Website 1+ mentions |
Vancouver Prostate Centre Laboratory for Advanced Genome Analysis (RRID:SCR_012394) | VPC LAGA, LAGA | access service resource, service resource, core facility | Core offers sequencing and microarray services, solutions for the profiling of FFPE tissues, and complete, project-tailored downstream bioinformatics analysis. The core's structure enables the management of research projects from experimental design to analysis and interpretation of data as well as support for grant applications and publications. The LAGA provides open fee-for-service access as a core facility (intra-institutional services to its researchers) and as regional, national and international facility (inter-institutional services). | Microarray, Profiling of FFPE, Analysis |
is listed by: ScienceExchange is related to: Vancouver Prostate Centre Labs and Facilities has parent organization: University of British Columbia; British Columbia; Canada |
Available to external user | SciEx_13 | https://www.prostatecentre.com/our-research/core-facilities/LAGA | https://www.scienceexchange.com/labs/laboratory-for-advanced-genome-analysis | SCR_012394 | , Laboratory for Advanced Genome Analysis, PC-TRiADD, VPC | 2026-07-28 09:43:06 | 1 | |||||
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Sanford Burnham Prebys Medical Discovery Institute Cheminformatics Core Resource Report Resource Website |
Sanford Burnham Prebys Medical Discovery Institute Cheminformatics Core (RRID:SCR_014875) | access service resource, service resource, core facility | Core facility that supports assay development, high throughput (HTS), ultra-high throughput (uHTS), and high-content screening (HCS) activities performed at the Conrad Prebys Center for Chemical Genomics by providing databases and tools for compound registration and inventory, HTS plate formatting and tracking, HTS and HCS bioassay data processing as well as related data and information handling. Data mining and reporting are also facilitated with a user-friendly database interface. The Cheminformatics core also supports the design and obtaining of appropriate compound collections, as well as SAR follow-up of hits, hit-to-lead optimization and in silico screening through docking and other molecular modeling approaches. | facility, la jolla, cheminformatics, analysis, assay, throughput, database | Commercially available | SCR_014875 | SBP Cheminformatics Core, SBP Medical Discovery Institute Cheminformatics Core | 2026-07-28 09:43:56 | 0 | ||||||||||
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JP Sulzberger Columbia Genome Center Resource Report Resource Website 1+ mentions |
JP Sulzberger Columbia Genome Center (RRID:SCR_012650) | Columbia Genome Center | access service resource, service resource, core facility | Core sells sequencing data and bioinformatic analytics services to the scientific community. Core aims to permit the development of research on sequencing protocols and encourage collaboration with clinicians to develop the next generation genomic DNA testing. | analysis, sequencing, screening |
is listed by: ScienceExchange is related to: Columbia University Labs and Facilities has parent organization: Columbia University; New York; USA |
Available to external user | SciEx_608 | http://www.scienceexchange.com/facilities/columbia-genome-center-columbia | SCR_012650 | Columbia University Genome Center | 2026-07-28 09:43:14 | 1 | ||||||
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Salk Institute Razavi Newman Integrative Genomics and Bioinformatics Core Facility (IGC) Resource Report Resource Website 500+ mentions |
Salk Institute Razavi Newman Integrative Genomics and Bioinformatics Core Facility (IGC) (RRID:SCR_014842) | SALK IGC, IGC | access service resource, service resource, core facility | Core facility established to assist the Salk community with integrating genomics data into their research. The primary focus of the core is to provide analysis support for next-generation sequencing applications. | core facility, gene, genomic, genomic data, analysis, consultation, applications | NCI CA014195; Helmsley Trust ; Salk Institute Razavi Newman Integrative Genomics and Bioinformatics Core Facility |
Open | SCR_014842 | , Integrative Genomics, Salk, Core Facility, Institute, Razavi Newman, UCSD, Bioinformatics | 2026-07-28 09:43:37 | 940 | ||||||||
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Gamess Resource Report Resource Website 100+ mentions |
Gamess (RRID:SCR_014896) | source code, software resource | Software program for ab initio molecular quantum chemistry. GAMESS can compute SCF wavefunctions ranging from RHF, ROHF, UHF, GVB, and MCSCF. Capabilities include using nuclear gradients for automatic geometry optimization, modeling of solvent effects, computation of the energy hessian for prediction of vibrational frequencies, as well as computation of nuclear wavefunctions. The program can also compute variety of molecular properties, ranging from simple dipole moments to frequency dependent hyperpolarizabilities. | molecular quantum chemistry, molecular properties, computation, analysis, visualization | SCR_014896 | The General Atomic and Molecular Electronic Structure System | 2026-07-28 09:43:37 | 263 | |||||||||||
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Scripps Research Institute Florida Cell Based High Throughput Screening Core Facility Resource Report Resource Website |
Scripps Research Institute Florida Cell Based High Throughput Screening Core Facility (RRID:SCR_014877) | TSRI CBS | access service resource, service resource, core facility | Core facility that provides access to genome-wide collections of cDNAs and siRNAs that can be used to interrogate cellular models of signal transduction pathways and phenotypes. Services include cell lines, hit-picking clones and various screening sets, and access to equipment.Provides instruments:Analyst Molecular Devices,Embla Molecular Devices, Envision Perkin Elmer, Platemate Matrix, Tecan M200, Wellmate Matrix. | USEDit, ABRF, Cell, high, throughput, screening, genome, collection, cDNA, siRNA, cellular, model, signal, transduction, pathway, phenotype, analysis, service, core, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Scripps Research Institute |
SCR_017832, ABRF_618 | https://coremarketplace.org/?FacilityID=618 | SCR_014877 | The Scripps Research Institute (CBS) Core, The Scripps Research Institute Cell-Based Screening (CBS) Core, Scripps Research Institute Cell-Based Screening Core, Cell-Based High-Throughput Screening Core | 2026-07-28 09:43:34 | 0 |
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