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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Leica: EG1160 Embedding Station Resource Report Resource Website |
Leica: EG1160 Embedding Station (RRID:SCR_018033) | instrument resource | Paraffin embedding station that provides constant, reproducible paraffin flow at ten different flow rate settings. All instrument functions, including automatic starting time, are individually programmable at press of button. Compact dimensions, ease of operation, and high standards of convenience. Separately-heated paraffin dispensing system with integrated filter provides constant, reproducible paraffin flow at ten different flow rate settings. | ABRF, paraffin embedding station, Leica, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018033.pdf | Model_Number_1160 | https://bme.columbia.edu/files/seasdepts/biomedical-engineering/pdf-files/Leica_EG1160_Manual.pdf | SCR_018033 | EG 1160 paraffin embedding station | 2026-07-25 12:08:44 | 0 | |||||||
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Molecular Devices: Molecular Dynamics Storm 860 Molecular Imager Resource Report Resource Website |
Molecular Devices: Molecular Dynamics Storm 860 Molecular Imager (RRID:SCR_018032) | instrument resource | Multifunction phosphoimager fluorimager laser scanner that collects fluorescent or storage phosphor images from gels, membranes and phosphor screens. It is equipped with blue (450 nm) and red (635 nm) lasers, can scan at resolutions down to 50 microns. It is able to quantify radioactive gels for commonly used isotopes such as 32P, 33P, 125I, 35S, and 14C. There are three detection modes: phosphor screen mode, red/blue fluorescence, chemifluorescence. | ABRF, molecular imager, GE HealthCare, gel, blot, analysis, laser scanner, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018032.pdf | Model_Number_Storm 860 Imager | https://btiscience.org/wp-content/uploads/2014/04/Storm_User_Manual.pdf | https://www.mbl.edu/jbpc/files/2014/05/Storm_Info.pdf | SCR_018032 | Storm 860 Molecular Imager, Storm Gel and Blot Imaging System | 2026-07-25 12:08:41 | 0 | ||||||
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PacBio: Sequel System Resource Report Resource Website 10+ mentions |
PacBio: Sequel System (RRID:SCR_017989) | instrument resource | Single Molecule, Real-Time sequencer by Pacific Biosciencies. System provides higher throughput, more scalability, reduced footprint and lower sequencing project costs compared to PacBi RS II System, while maintaining benefits of SMRT technology. Ideal for projects such as generating high quality, whole genome de novo assemblies for larger genomes, such as human, plants, and animals. Provides characterization of wide variety of genomic variation types, including those in complex regions not accessible with short-read or synthetic long-range sequencing technologies, while simultaneously revealing epigenetic information. | sequencing machine, hardware, high-throughput sequencing, instrument, equipment | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_017989.pdf | https://www.pacb.com/wp-content/uploads/Operations-Guide-Sequel-II-and-Sequel-IIe-Systems.pdf | SCR_017989 | PacBio Sequel™ System, Sequel System | 2026-07-25 12:08:42 | 28 | ||||||||
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Thermo Fisher: Applied Biosystems: 3130xl Capillary Array Resource Report Resource Website |
Thermo Fisher: Applied Biosystems: 3130xl Capillary Array (RRID:SCR_018048) | instrument resource | Genetic analyzer that performs fragment analysis and rapid sequencing applications. Usage per array is 100 runs with use of Applied Biosystems reagents. | ABRF, capillary fluorescence sequencer, 16-capillary array, genetic analyzer, instrument, equipment | is listed by: USEDit | Model_Number_3130xl | https://assets.thermofisher.com/TFS-Assets/LSG/manuals/4477796.PDF | SCR_018048 | Applied Biosystems 3130xl capillary fluorescence sequencer | 2026-07-25 12:08:41 | 0 | ||||||||
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Marshall Scientific: Saphyr Resource Report Resource Website 1+ mentions |
Marshall Scientific: Saphyr (RRID:SCR_017992) | instrument resource | Whole genome imaging instrument by Bionano Genomics for high speed, high throughput structural variant detection and analysis with exceptional sensitivity and specificity. Detects structural variations ranging from 500 bp to megabase pairs in length. For mosaic samples or heterogeneous cancer samples, detects all types of structural variants down to 5% Variant Allele Fraction. Calls repeats and complex rearrangements. | sequencing machine, hardware, high-throughput sequencing, instrument, equipment | Restricted | https://www.analogway.com/files/uploads/produit/download/user-manual-saphyr.pdf | https://bionanogenomics.com/products/saphyr/ | SCR_017992 | BIONANO SAPHYR® GENOME IMAGING | 2026-07-25 12:08:42 | 6 | ||||||||
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GE: Healthcare: 9410 Variable Mode Imager Resource Report Resource Website 1+ mentions |
GE: Healthcare: 9410 Variable Mode Imager (RRID:SCR_018047) | instrument resource | Variable mode imager that operates in three different modes, including phosphorescence, fluorescence, and chemiluminescence. Can scan in visible range using reflected light. Scanning resolution ranges from 1000um down to 10um. Scanning software is linked to ImageQuant TL 7.0 analysis software. ImageQuant is capable of quantifying Typhoon images such as those from Northern or Western blots. Images can be saved in various formats and imported into Powerpoint slides. Instrument has three excitation lasers (532nm, 633nm, 488nm). Instrument utilizes 536SP, 670BP, 520BP emission filters for fluorescence. For DNA, RNA and protein samples you may choose from: storage phosphor auto-radiography, direct blue-excited fluorescence (457-488 nm), direct green-excited fluorescence (532 nm), direct red-excited fluorescence (633 nm), and chemiluminescence. | ABRF, scanner, phosphorescence, fluorescence, chemiluminescence, microarray imager, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018047.pdf | Model_Number_9410 | https://nba.uth.tmc.edu/Assets/pdf/other/typhoon_supporting_files/typhoon_operating_instructions.pdf | SCR_018047 | Typhoon 9410 Multi-Image scanner (GE Healthcare) | 2026-07-25 12:08:39 | 1 | |||||||
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Leica: Biosystems RM2265 Fully Automated Rotary Microtome Resource Report Resource Website 1+ mentions |
Leica: Biosystems RM2265 Fully Automated Rotary Microtome (RRID:SCR_018041) | instrument resource | Automated rotary microtome that sections tissue samples. Specimen feed system with zero-backlash and maintenance-free cross roller guides and stepper motor operated coarse feed system are located in dust-proof plastic housing. Equipped with safety handwheel with handle that can be centered, as well as mechanical handwheel lock. In manual operation retraction can be adjusted. In motorized operation retraction value varies with selected sectioning speed. | ABRF, automated microtome, tissue sample sectioning, Leica, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018041.pdf | Model_Number_2265 | https://www.biomarker.hu/sites/default/files/katalogus-fajlok/95.11560_rev_b_brochure_rm2265_en.pdf | SCR_018041 | Leica RM2265 automated microtome | 2026-07-25 12:08:38 | 9 | |||||||
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Leica: RM2125 RTS Manual Microtome Resource Report Resource Website 1+ mentions |
Leica: RM2125 RTS Manual Microtome (RRID:SCR_018040) | instrument resource | Manual rotary microtome that sections tissue samples. Features include precise feed mechanism, powerBase that ensures stable operation for vibration-free sectioning, advanced knife holder and specimen clamp securely align cutting edge to block, user-selectable coarse feed wheel turn direction and retraction functions, hand wheel, in-built safety guards and rounded shape with arm rests for fatigue-free sectioning,quick-exchange specimen clamp and orientation system for object head allow rapid set up for any block, and two trim steps. | ABRF, paraffin microtome, manual rotary, tissue sample sectionin g, Leica, instrument, equipment | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018040.pdf | Model_Number_RM2125 | https://www.leicabiosystems.com/sites/default/files/media_product-download/2022-01/Leica_RM2125RTS_IFU_2v9M_en.pdf | SCR_018040 | RM 2125 paraffin microtome | 2026-07-25 12:08:44 | 4 | |||||||
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Thermo Fisher: Applied Biosystems: 3130 Genetic Analyzer Resource Report Resource Website 1+ mentions |
Thermo Fisher: Applied Biosystems: 3130 Genetic Analyzer (RRID:SCR_018046) | instrument resource | Genetic analyzer can run sequencing and fragment analysis applications including microsatellite analysis, AFLP, LOH, SNP validation, and SNP screening. Maintenance time is reduced by eliminating manual syringe washing and filling with automated polymer delivery. Can increase data quality for sequencing and fragment analysis applications by longer read length, and higher resolution with shorter run times. Uses 96- or 384-well plates with four capillary array. | ABRF, genetic analyzer, 4 capillary electrophoresis, DNA sequencer, microsatellite analysis, AFLP, LOH, SNP validation, SNP screening, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018046.pdf | Model_Number_3130 | https://assets.thermofisher.com/TFS-Assets/LSG/manuals/4477796.PDF | SCR_018046 | Applied Biosystems 3130 (4-capillary) Genetic Analyzer, Genetic Analyzer (4 capillary) | 2026-07-25 12:08:44 | 2 | |||||||
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GE: Biacore 3000 Real Time Biomolecular Interaction Analyzer Resource Report Resource Website 1+ mentions |
GE: Biacore 3000 Real Time Biomolecular Interaction Analyzer (RRID:SCR_018044) | instrument resource | Biacore 3000 processing unit is an established, label-free system for detailed studies of biomolecular interactions. The system delivers comprehensive characterization of the interaction, answers questions about the rate constants, affinity, specificity, and determines the active concentration of components. The ability to recover and transfer interaction partners directly to MALDI targets for identification and further characterization makes the system highly applicable to fast identification of unknown interactants. | ABRF, Real Time Biomolecular Interaction Analyzer, GE Healthcare, instrument, equipment | is listed by: USEDit | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018044.pdf | SCR_019676, SCR_018577, Model_Number_Biacore 3000 | https://www.ibps.sorbonne-universite.fr/ressources/documents/1/2276, Brochure-Biacore-3000.pdf | https://www.gelifesciences.com/en/us/shop/biacore-3000-goldseal-p-02795 | SCR_018044 | BIACORE 3000 GOLDSEAL, BiaCore 3000 Surface Plasmon Resonance | 2026-07-25 12:08:38 | 4 | |||||
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Agilent: 2100 Bioanalyzer Instrument Resource Report Resource Website 100+ mentions |
Agilent: 2100 Bioanalyzer Instrument (RRID:SCR_018043) | instrument resource | Bioanalyzer system is automated electrophoresis tool that provides an analytical evaluation of various samples types in many workflows, including next generation sequencing NGS, gene expression, biopharmaceutical, and gene editing research. Digital data is provided in timely manner and delivers assessment of sizing, quantitation, integrity and purity from DNA, RNA, and proteins. Minimal sample volumes are required for accurate result, and data may be exported in many different formats. | ABRF, bioanalyzer, electrophoresis, DNA, RNA, protein, data analysis, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018043.pdf | SCR_019389, Model_Number_2100 Bioanalyzer | https://www.agilent.com/cs/library/usermanuals/public/2100_Bioanalyzer_Expert_USR.pdf | SCR_018043 | Agilent 2100 Bioanalyzer, , 2100 Bioanalyzer (Agilent Technologies) | 2026-07-25 12:08:44 | 194 | |||||||
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NeuroNexus: nDrive Resource Report Resource Website 1+ mentions |
NeuroNexus: nDrive (RRID:SCR_018019) | instrument resource | Microdrive for chronic implantation of neural probe by NeuroNexus. | Microdrive, chronic implantation, neural probe, NeuroNexus, animal surgery, equipment, instrument | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018019.pdf | https://www.neuronexus.com/files/accessories/IST_nDrive_Manual.pdf | SCR_018019 | 2026-07-25 12:08:40 | 1 | |||||||||
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Wafergen: Apollo 324 NGS Library Prep Resource Report Resource Website 1+ mentions |
Wafergen: Apollo 324 NGS Library Prep (RRID:SCR_018027) | instrument resource | Compact benchtop platform that enables rapid and full walk-away automation of next generation sequencing applications. Paired with PrepX reagents, Apollo 324 line offers complete sample-toanswer solution for NGS library prep. Apollo 324 automated protocols and PrepX reagent kits combine liquid handling and proven chemistries to produce high quality libraries for all major NGS platforms. System provides complete, walkaway solution using validated protocols and chemistries that produce consistent libraries for DNA-seq, RNA-seq, and ChIP-seq applications. | ABRF, Library Preparation System, Wafergen Biosystems, next generation sequencing, DNA-seq, RNA-seq, CHIP-seq, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018027.pdf | Model_Number_324 | http://www.thunderbiosci.co.kr/wp-content/uploads/2017/07/Apollo-324_brochure.pdf | SCR_018027 | Apollo 324 NGS Library Prep System, Apollo 324 NGS Library Prep Robot | 2026-07-25 12:08:43 | 1 | |||||||
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Select Science: Carestream Gel Logic 212 PRO Imaging System Resource Report Resource Website 10+ mentions |
Select Science: Carestream Gel Logic 212 PRO Imaging System (RRID:SCR_018029) | instrument resource | Automated gel imaging system for imaging fluorescence or colorimetric data in sample formats such as gels (DNA/Coomassie/Silver stain) membranes, and 96 well plates. Features include autofocusing and directed autoexposure. | imager, Bruker BioSpin, imaging, fluorescence, colorimetric, gel, data, instrument, equipment | is listed by: USEDit | SCR_018601 | SCR_018029 | Carestream Gel Logic 212 PRO Imaging System, Gel Logic 212 PRO, Bruker BioSpin Gel Logic 212 PRO, Carestream Gel Pro 212 Imager | 2026-07-25 12:08:41 | 43 | |||||||||
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Bio-Rad: CFX96 Real-Time PCR Detection System Resource Report Resource Website 50+ mentions |
Bio-Rad: CFX96 Real-Time PCR Detection System (RRID:SCR_018064) | instrument resource | Real Time PCR detection system that combines optical technology with temperature control. Six channel, five colors and one FRET channel, real-time PCR instrument for singlexplex or multiplex reactions. Quickly set up runs and monitor amplification traces in real time on integrated LCD touch screen, or use included CFX Maestro Software to design experiment and analyze results from connected computer. | ABRF, Real-Time Instrument, RT PCR, equipment, Bio Rad | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018064.pdf | Model_Number_CFX96 | https://www.bio-rad.com/webroot/web/pdf/lsr/literature/10010424.pdf | SCR_018064 | CFX96 Real Time PCR | 2026-07-25 12:08:45 | 80 | |||||||
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Zeiss: LSM 710 Confocal Inverted Microscope Resource Report Resource Website 10+ mentions |
Zeiss: LSM 710 Confocal Inverted Microscope (RRID:SCR_018063) | instrument resource | Inverted microscope that enables confocal microscopy in cell and developmental biology. | ABRF, Confocal Inverted Microscope, Zeiss, instrument, equipment | is listed by: USEDit | Model_Number_LSM 710 | https://www.zmbh.uni-heidelberg.de/Central_Services/Imaging_Facility/info/780ZEN2010.pdf | SCR_018063 | LSM-710 with incubation | 2026-07-25 12:08:42 | 36 | ||||||||
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Zeiss: LSM 510 Confocal Microscope Resource Report Resource Website 10+ mentions |
Zeiss: LSM 510 Confocal Microscope (RRID:SCR_018062) | instrument resource | Versatile laser scanning confocal microscope system that is available in both upright or inverted format. Equipped with ICS-Optics. Selection of dry, water immersion and oil immersion objectives are available. ICS-Optics are infinity color corrected. | ABRF, Confocal Laser Scanning Microscope, Zeiss, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018062.pdf | Model_Number_LSM 510 | https://www.bio.umass.edu/microscopy/Guided_Tour_for_LSM_510_and_META.pdf | SCR_018062 | Zeiss LSM-510 META NLO Laser Scanning Confocal Microscope with multiphoton capability | 2026-07-25 12:08:39 | 10 | |||||||
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BioSpherix: C-Chamber Resource Report Resource Website 1+ mentions |
BioSpherix: C-Chamber (RRID:SCR_018189) | instrument resource | Culture chamber for cell culture by BioSpherix. Functionalized by gas controllers for all bioactive gases, e.g. O2, CO2, CO, NO, etc. Made of clear polycarbonate. Magnetic seal door. Temperature is controlled. Combines with ProOx 110, ProCO2, ProOx C21, OxyCycler Series. | Culture chamber, cell culture, BioSpherix, incubator, gas controlled, temperature controlled, instrument, equipment | Restricted | https://biospherix.com/wp-content/uploads/2017/11/Cell-Research-Literature_C-Chamber-Subchamber.pdf | SCR_018189 | C-Chamber, Culture Chamber | 2026-07-25 12:08:41 | 1 | |||||||||
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Sony biotechnology: SH800S Cell Sorter Resource Report Resource Website 10+ mentions |
Sony biotechnology: SH800S Cell Sorter (RRID:SCR_018066) | instrument resource | Benchtop cell sorter that sorts wide range of cell sizes for many applications using microfluidic sorting chips. Integrated with comprehensive fluidics controls and advanced automation for set-up, acquisition, sort and analysis. System software supports sorting into tubes and 96- and 384-well plates. Software generates FCS 3.0 and FCS 3.1 files that can be exported to third party analysis tools. For non-clinical research use only. For applications in which cross-contamination is concern, optional e-beam sterilized consumables can be used to replace sample line and sorting chip. Optional class A2 Level II biosafety cabinet provides protection for personnel and products. Biosafety cabinet meets international standards.Optical design offers up to four collinear excitation lasers (488 nm, 405nm, 561nm and 638nm) and six fluorescence detectors. The six free-form PMTs enable detection of fluorescence signals from any laser based on filter selection. | ABRF, benchtop cell sorter, instrument, Sony Biotechnology, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018066.pdf | Model_Number_SH800S | https://www.sonybiotechnology.com/wordpress/wp-content/uploads/2016/05/Sony_SH800S.pdf | SCR_018066 | SH800 cell sorter | 2026-07-25 12:08:42 | 17 | |||||||
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Mizar Imaging: Tilt High Resolution Light Sheet Imaging System Resource Report Resource Website |
Mizar Imaging: Tilt High Resolution Light Sheet Imaging System (RRID:SCR_018156) | instrument resource | Modular light sheet illumination system designed to image living samples with minimal photobleaching or phototoxicity by Mizar Imaging. Enables high spatial and temporal resolution light sheet imaging to be added to existing or new microscope system. | Mizar Imaging, light sheet imaging, modular homology, illumination system, image living sample, minimal photobleaching, minimal phototoxicity, microscope system, instrument, equipment | Restricted | https://www.mizarimaging.com/wp-content/uploads/2018/11/Tilt-Datasheet-3.pdf | SCR_018156 | Tilt | 2026-07-25 12:08:41 | 0 |
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