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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Minian Resource Report Resource Website 1+ mentions |
Minian (RRID:SCR_022601) | software application, data analysis software, software resource, data processing software, software toolkit | Software miniscope analysis pipeline that requires low memory and computational demand so it can be run without specialized hardware. Offers interactive visualization that allows users to see how parameters in each step of pipeline affect output. | Miniscope, analysis pipeline, calcium imaging, mouse, Visualization, OpenBehavior |
is listed by: OpenBehavior has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
NIMH DP2MH122399; NIMH R01MH120162; NIBIB R01EB028166; NSF 1926800; NSF 2046583; NINDS U01NS094286; NSF 1700408; NIA F32AG067640; NINDS R03 NS111493; NIDA R21 DA049568; NINDS R01 NS116357 |
PMID:35642786 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/minian/ | SCR_022601 | 2026-07-28 09:45:38 | 4 | |||||||
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OpenSync Resource Report Resource Website |
OpenSync (RRID:SCR_022722) | software application, software resource, data analysis software, data processing software | Open source platform for synchronizing multiple behavioral and physiological signals in neuroscience experiments. | synchronizing multiple behavioral and physiological signals, behavioral and physiological measures, synchronizing signals, neuroscience experiments, OpenBehavior |
is listed by: OpenBehavior has parent organization: Texas A and M University; Texas; USA |
Free, Available for download, Freely available | https://github.com/moeinrazavi/OpenSync/wiki, https://edspace.american.edu/openbehavior/?s=OpenSync | SCR_022722 | 2026-07-28 09:45:41 | 0 | |||||||||
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Spike Forest project Resource Report Resource Website |
Spike Forest project (RRID:SCR_021472) | project portal, data or information resource, portal | Project related to neural data analysis. Provides open-source and reproducible software suite that benchmarks performance of automated spike sorting algorithms across extensive, curated database of ground truth electrophysiological recordings, displaying results interactively on continuously updating website. | Validating automated neural spike sorters, electrophysiological recordings, spike sorting codes, spike sorting analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Spike Forest |
DOI:10.7554/elife.55167 | Free, Freely available | SCR_021472 | Spike Forest | 2026-07-28 09:45:22 | 0 | ||||||||
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Pypreclin project Resource Report Resource Website |
Pypreclin project (RRID:SCR_021473) | project portal, data or information resource, portal | Project related to preprocessing of images. Provieds software Python tool to processes raw macaque fMRI images using algorithms embedded in automatic pipeline. | Raw macaque fMRI images, fMRI images, macaque images, Python, OpenBehavior |
is listed by: OpenBehavior is related to: Pypreclin |
DOI:10.1016/j.neuroimage.2019.116353 | Free, Freely available | SCR_021473 | Pypreclin | 2026-07-28 09:45:10 | 0 | ||||||||
|
MNE Scan project Resource Report Resource Website |
MNE Scan project (RRID:SCR_021470) | project portal, data or information resource, portal | Project related to real time acquisition and processing of electrophysiological data.Provides software tool for acquisition and processing of electrophysiological data. | Electrophysiological data processing, medical regulatory requirements, build standalone applications, MEG data acquisition, MEG data processing, EEG data acquisition, MEG data acquisition, OpenBehavior |
is listed by: OpenBehavior is related to: MNE Scan |
DOI:10.1016/j.jneumeth.2018.03.020 | Free, Freely available | SCR_021470 | MNE Scan | 2026-07-28 09:45:10 | 0 | ||||||||
|
Live Mouse Tracker analysis Resource Report Resource Website 1+ mentions |
Live Mouse Tracker analysis (RRID:SCR_021505) | LMT analysis | software toolkit, software resource | Software package for Live Mouse Tracker analysis. lmt-analysis provides all analysis tools needed to extract information from tracking performed by live mouse tracker. | Live Mouse Tracker, Live Mouse Tracker data analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Live Mouse Tracker project is related to: Live Mouse Tracker Toolkit Analysis |
PMID:31110290 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/live-mouse-tracker/ | SCR_021505 | , lmt-analysis, live mouse tracker analysis, LMT analysis | 2026-07-28 09:45:11 | 2 | ||||||
|
3DTracker project Resource Report Resource Website |
3DTracker project (RRID:SCR_021440) | project portal, data or information resource, portal | Project related to markerless computerized behavioral analysis for laboratory animals.Provides open source 3D video based behavioral analysis system for neuroscience. System includes open source software tool for 3D-video based markerless computerized behavioral analysis. | 3D video, computerized behavioral analysis, laboratory animals, reconstruct 3D image, animal image, 3D image, estimate animal 3D pose, behavior measurement, freely moving, head fixed, OpenBehavior |
is listed by: OpenBehavior is related to: 3DTracker |
Free, Freely available | SCR_021440 | 3DTracker | 2026-07-28 09:45:09 | 0 | |||||||||
|
LinCoM project Resource Report Resource Website |
LinCoM project (RRID:SCR_021438) | project portal, data or information resource, portal | Project related to animal behavior in complex mazes.Provides software MATLAB package for linearization of place fields in complex mazes. | Place fields linearization, complex mazes, producing linear place fields, hippocampal cells, complex mazes behavior, OpenBehavior |
is listed by: OpenBehavior is related to: LinCoM |
DOI:10.1101/2020.08.17.253849 | Free, Freely available | SCR_021438 | LinCoM | 2026-07-28 09:45:13 | 0 | ||||||||
|
EthoWatcher project Resource Report Resource Website |
EthoWatcher project (RRID:SCR_021435) | project portal, data or information resource, portal | Project related to video tracking, detailed ethography, and extraction of kinematic variables from digital video files of laboratory animals.Provides computational tool developed at Federal University of Santa Catarina. | Video tracking, kinematic variables extraction. digital video files, laboratory animals, OpenBehavior |
is listed by: OpenBehavior is related to: EthoWatcher has parent organization: Federal University of Santa Catarina; Santa Catarina; Brazil |
DOI:10.1016/j.compbiomed.2011.12.002 | Free, Freely available | SCR_021435 | EthoWatcher | 2026-07-28 09:45:13 | 0 | ||||||||
|
Automated Rodent Tracker project Resource Report Resource Website |
Automated Rodent Tracker project (RRID:SCR_021432) | ART | project portal, data or information resource, portal | Project related to development of automated rodent tracking position and movement. Provides software tool to automatically track rodent.Used to track head movements, body movements and also aspects of body size.Identifies certain behaviours from video footage, such as rotations, moving forwards, interacting with objects and staying still. | Track rodent position, track movement, track head movements, track body movements, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Rodent Tracker |
DOI:10.1016/j.jneumeth.2017.04.006 | Free, Freely available | SCR_021432 | Automated Rodent Tracker | 2026-07-28 09:45:12 | 0 | |||||||
|
DeepSqueak project Resource Report Resource Website |
DeepSqueak project (RRID:SCR_021450) | project portal, data or information resource, portal | Project related to rodent social communication through repertoire of ultrasonic vocalizations. Provides deep learning based system for quantification of Ultrasonic Vocalizations.Includes software MATLAB package for high throughput USV detection, classification, and analysis. | data quantification, ultrasonic vocalizations quantification, ultrasonic vocalization, OpenBehavior |
is listed by: OpenBehavior is related to: DeepSqueak |
DOI:10.1038/s41386-018-0303-6 | Free, Freely available | SCR_021450 | DeepSqueak | 2026-07-28 09:45:13 | 0 | ||||||||
|
Camera Control project Resource Report Resource Website |
Camera Control project (RRID:SCR_021569) | project portal, data or information resource, portal, software resource | Portal provides Python based camera software GUI developed by Harvard University scientists. Open source software package that allows video to be recorded in sync with behavior. Python API to record video system timestamps from Imaging Source USB cameras. | Camera software, Python API, record video system timestamps, Imaging Source USB cameras, OpenBehavior |
is listed by: OpenBehavior is related to: Camera Control has parent organization: Harvard University; Cambridge; United States |
Free, Freely available | SCR_021569 | Camera Control | 2026-07-28 09:45:26 | 0 | |||||||||
|
Rigbox project Resource Report Resource Website |
Rigbox project (RRID:SCR_021444) | project portal, data or information resource, portal | Project related to streamlining behavioral neuroscience experiments.Provides open source software MATLAB toolbox for running behavioral neuroscience experiments and managing data.Used for probing neurons and behavior. | Managing behavioral neuroscience experiments, running behavioral neuroscience experiments, managing data, acquiring experiment related data, OpenBehavior |
is listed by: OpenBehavior is related to: Rigbox |
DOI:10.1523/eneuro.0406-19.2020 | Free, Freely available | SCR_021444 | Rigbox | 2026-07-28 09:45:13 | 0 | ||||||||
|
Online Animal Tracker project Resource Report Resource Website |
Online Animal Tracker project (RRID:SCR_021386) | OAT | project portal, data or information resource, portal | Project related to processing video, extracting object position information, and streaming data.Provides set of programs for processing video for behavioral research. Includes OAT software tool as real time position tracker which was developed by Massachusetts Institute of Technology scientists. | Real time animal position tracking, experimental neuroscience, real time object tracking, processing images, extracting object position information, streaming data to disk, OpenBehavior |
is listed by: OpenBehavior is related to: Online Animal Tracker has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
Free, Freely available | SCR_021386 | Online Animal Tracker | 2026-07-28 09:45:07 | 0 | ||||||||
|
Behavioral Segmentation of Open-field in DeepLabCut project Resource Report Resource Website |
Behavioral Segmentation of Open-field in DeepLabCut project (RRID:SCR_021410) | B-SOiD | project portal, data or information resource, portal | Project related to unsupervised behavior analysis.Carnegie Mellon University has shared B-SOiD, open source unsupervised algorithm for discovery of spontaneous behaviors. Includes software pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users. | OpenBehavior, pairs unsupervised pattern recognition, supervised classification, behavior predictions, discovers actions, classifies actions |
is listed by: OpenBehavior is related to: Behavioral Segmentation of Open-field in DeepLabCut has parent organization: Carnegie Mellon University; Pennsylvania; USA |
DOI:10.1101/770271 | Free, Freely available | SCR_021410 | B-SOiD v2.0, Behavioral Segmentation of Open-field in DeepLabCut | 2026-07-28 09:45:12 | 0 | |||||||
|
Simple Behavior Analysis project Resource Report Resource Website |
Simple Behavior Analysis project (RRID:SCR_021411) | project portal, data or information resource, portal | University of Washington project SimBA for analysis of complex social behaviors.Used for automated behavioral scoring. Includes open source software toolkit for computer classification of complex social behaviors in experimental animals. Uses data from popular open source tracking tools in combination with small amount of behavioral annotations to create supervised machine learning classifiers that can then rapidly and accurately score behaviors across different background settings and lighting conditions. | Complex social behaviors classifications, supervised behavioral classifiers development, score behaviors across different background settings, OpenBehavior |
is listed by: OpenBehavior is related to: Simple Behavior Analysis has parent organization: University of Washington; Seattle; USA |
DOI:10.1101/2020.04.19.049452 | Free, Freely available | SCR_021411 | Simple Behavior Analysis, SimBA | 2026-07-28 09:45:19 | 0 | ||||||||
|
ezTrack project Resource Report Resource Website |
ezTrack project (RRID:SCR_021418) | project portal, data or information resource, portal | Project related to behavior analysis.Mt.Sinai scientist developed open source video analysis pipeline for investigation of animal behavior.Used to track location, motion, and freezing of animal. | Track animal location, track motion, track animal freezing, OpenBehavior |
is listed by: OpenBehavior is related to: ezTrack has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
DOI:10.1038/s41598-019-56408-9 | Free, Freely available | SCR_021418 | ezTrack | 2026-07-28 09:45:20 | 0 | ||||||||
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FreemoVR project Resource Report Resource Website 1+ mentions |
FreemoVR project (RRID:SCR_021551) | project portal, data or information resource, portal | Portal related to virtual reality for freely moving animals.Provides virtual reality system set up for unrestrained animals.System developed by University of Frieburg scientists. This Virtual Reality system can be used with number of different species including mice, zebrafish, and Drosophila. | Virtual reality system, unrestrained animals, behavior, brain function, OpenBehavior |
is listed by: OpenBehavior is related to: FreemoVR has parent organization: University of Freiburg; Baden-Wurttemberg; Germany |
DOI:10.1038/nmeth.4399 | Free, Freely available | SCR_021551 | FreemoVR | 2026-07-28 09:45:25 | 2 | ||||||||
|
DeepLabCut Project Resource Report Resource Website 50+ mentions |
DeepLabCut Project (RRID:SCR_021398) | project portal, data or information resource, portal | Project for markerless pose estimation of user defined body parts with deep learning. | OpenBehavior, animal pose estimation, markerless pose estimation, body parts, multi-animal pose estimation, B-SoID, Stytra, Kinemouse Wheel |
lists: DeepLabCut is listed by: OpenBehavior is related to: Anipose |
DOI:10.1038/s41593-018-0209-y | Free, Available for download, Freely Available | https://github.com/DeepLabCut/DeepLabCut | SCR_021398 | 2026-07-28 09:45:08 | 56 | ||||||||
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Pyper project Resource Report Resource Website |
Pyper project (RRID:SCR_021431) | project portal, data or information resource, portal | Project related to motion tracking of specimen in open field. Provides software tool for motion tracking.Used to track path of object of interest in live feed from camera or recorded video. Used to track rodents in open field maze as well as retina of mice.New version of Pyper allows to customise image processing to track different kind of objects. | Motion tracking, open field, track path of object, live feed from camera, live feed recorded video, track rodents, open field maze, OpenBehavior |
is listed by: OpenBehavior is related to: Pyper |
Free, Freely available | SCR_021431 | Pyper | 2026-07-28 09:45:08 | 0 |
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