Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Pairwise Conservation Scores - An Algorithm to Identify Conserved K-mers Resource Report Resource Website 1+ mentions |
Pairwise Conservation Scores - An Algorithm to Identify Conserved K-mers (RRID:SCR_013409) | PCS | software resource | A stand-alone package to identify and analyze conserved k-mers in pairwise alignment. This program shows high performance for identifying miRNA seed binding sites in 3''-UTRs. | perl, perl script, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Tsinghua University; Beijing; China |
biotools:pcs, nlx_33020 | https://bio.tools/pcs | http://bioinfo.au.tsinghua.edu.cn/member/~gujin/pcs/ | SCR_013409 | Pairwise Conservation Scores | 2026-07-25 12:07:49 | 3 | ||||||
|
ArrayOligoSelector Resource Report Resource Website 10+ mentions |
ArrayOligoSelector (RRID:SCR_013494) | ArrayOligoSelector | software resource | Software program to systematically design gene specific long oligonucleotide probes for entire genomes, for the purpose of developing whole genome microarrays. For each open reading frame, the program optimizes the oligo selection based upon several parameters, including uniqueness in the genome, sequence complexity, lack of self-binding, GC content and proximity to the 3''end of the gene. |
is listed by: OMICtools has parent organization: University of California at San Francisco; California; USA has parent organization: SourceForge |
PMID:12620119 | Free, Public, Commercial requires license, Use of the blat or gfclient options requires license | OMICS_00826 | SCR_013494 | 2026-07-25 12:07:50 | 13 | ||||||||
|
Engineering and Physical Sciences Research Council Resource Report Resource Website 10+ mentions |
Engineering and Physical Sciences Research Council (RRID:SCR_013495) | EPSRC | institution | EPSRC is the main UK government agency for funding research and training in engineering and the physical sciences, investing more than £850 million a year in a broad range of subjects from mathematics to materials science, and from information technology to structural engineering. We support research into engineering, mathematics, physics, chemistry, materials science, information and communications technologies. EPSRC is a non-departmental public body funded by the UK government through the Department for Universities, Innovation and Skills. We employ around 300 staff in Swindon. We manage our portfolio through programmes. Research base programmes focus on investigator-led research and training. Business innovation programmes deliver our priority research themes and maximise the economic and social impact of the research and training we fund. | ISNI: 0000 0004 0394 8681, Wikidata: Q5377871, Crossref funder ID: 501100000266, grid.421091.f, nlx_10253 | https://ror.org/0439y7842 | SCR_013495 | UK EPSRC | 2026-07-25 12:07:51 | 10 | |||||||||
|
TreeView Resource Report Resource Website 1000+ mentions |
TreeView (RRID:SCR_013503) | TreeView | software resource | Software to graphically browse results of clustering and other analyses from Cluster. |
is listed by: OMICtools is listed by: Debian is listed by: SoftCite has parent organization: University of California at Berkeley; Berkeley; USA |
DOI:10.1093/bioinformatics/bth349 | OMICS_01574 | https://sources.debian.org/src/treeview/ | SCR_013503 | 2026-07-25 12:07:54 | 2742 | ||||||||
|
ScanAlyze Resource Report Resource Website 10+ mentions |
ScanAlyze (RRID:SCR_013507) | ScanAlyze | software resource | Software to process fluorescent images of microarrays. |
is listed by: OMICtools has parent organization: University of California at Berkeley; Berkeley; USA |
OMICS_00846 | SCR_013507 | 2026-07-25 12:07:50 | 43 | ||||||||||
|
CNV-seq Resource Report Resource Website 100+ mentions |
CNV-seq (RRID:SCR_013357) | CNV-seq | software resource | A method for detecting DNA copy number variation (CNV) using high-throughput sequencing., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
THIS RESOURCE IS NO LONGER IN SERVICE | biotools:cnv-seq, OMICS_00339 | https://bio.tools/cnv-seq | SCR_013357 | 2026-07-25 12:07:50 | 167 | |||||||
|
MEDEA Resource Report Resource Website 100+ mentions |
MEDEA (RRID:SCR_013356) | MEDEA | software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented June, 2019.Comparative Genomic Visualization with Adobe Flash. |
is listed by: OMICtools has parent organization: Broad Institute |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00941 | SCR_013356 | 2026-07-25 12:07:48 | 119 | |||||||||
|
Center for Cell Analysis and Modeling Resource Report Resource Website |
Center for Cell Analysis and Modeling (RRID:SCR_013656) | data computation service | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 26,2023. CCAM is one of five National Technology Centers for Networks and Pathways, NTCNP, funded throught the NIH Technology Center for Networks and Pathways, TCNP. CCAM integrates new microscope technologies for making quantitative in vivo live cell measurements with new physical formulations and computational tools that will produce spatially realistic quantitative models of intracellular dynamics. :The overarching rationale for CCAMs research as a TCNP is that polarity in networks and pathways is determined by the spatial organization, subcellular distribution, dynamic behavior, interactions and functions of specific molecules within the cell. To investigate these relationships, we use a tripartite approach described as: :1) Measure - develop new tools for measuring spatially resolved dynamic behavior of molecules in cells, :2) Model - develop new methods for spatial modeling of biological systems. :3) Manipulate - develop new techniques for manipulating the spatial distribution of molecules in living cells. :Microscopy contrast enhancement protocol, biophotonics, subcellular : | has parent organization: University of Connecticut; Connecticut; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00528 | SCR_013656 | CCAM - Computational Facility | 2026-07-25 12:07:58 | 0 | |||||||||
|
AAAS Resource Report Resource Website 100+ mentions |
AAAS (RRID:SCR_013659) | AAAS | nonprofit organization | It is an international non-profit organization dedicated to advancing science around the world by serving as an educator, leader, spokesperson and professional association. In addition to organizing membership activities, AAAS publishes the journal Science, as well as many scientific newsletters, books and reports, and spearheads programs that raise the bar of understanding for science worldwide. :AAAS History: Founded in 1848, AAAS serves some 262 affiliated societies and academies of science, serving 10 million individuals. Science has the largest paid circulation of any peer-reviewed general science journal in the world, with an estimated total readership of one million. The non-profit AAAS is open to all and fulfills its mission to advance science and serve society through initiatives in science policy; international programs; science education; and more. For the latest research news, log onto EurekAlert!, the premier science-news Web site, a service of AAAS. :Membership and Programs: Open to all, AAAS membership includes a subscription to Science. Four primary program areas fulfill the AAAS mission: * Science and Policy * International Activities * Education and Human Resources * Project 2061 :AAAS Mission: AAAS seeks to advance science, engineering, and innovation throughout the world for the benefit of all people. To fulfill this mission, the AAAS Board has set these broad goals: * Enhance communication among scientists, engineers, and the public; * Promote and defend the integrity of science and its use; * Strengthen support for the science and technology enterprise; * Provide a voice for science on societal issues; * Promote the responsible use of science in public policy; * Strengthen and diversify the science and technology workforce; * Foster education in science and technology for everyone; * Increase public engagement with science and technology; and * Advance international cooperation in science. : | ISNI: 0000 0000 9804 9902, nif-0000-00440, grid.27324.30, Wikidata: Q40358, Crossref funder ID: 100000958 | https://ror.org/05j0w0e76 | SCR_013659 | American Association for the Advancement of Science, The American Association for the Advancement of Science | 2026-07-25 12:07:56 | 185 | |||||||||
|
EURAXESS Links Resource Report Resource Website |
EURAXESS Links (RRID:SCR_013660) | people resource | A networking tool for European researchers abroad. It provides information about research in Europe, European research policy, opportunities for research funding, for international collaboration and for trans-national mobility. Membership is free. :The objective of EURAXESS Links is a flourishing network of European researchers, scientists and scholars abroad. The network is already running in the USA since 2005 and has been launched in Japan in June 2008. The members of the network are informed about European Union research policies and made aware of career opportunities in Europe as well as opportunities for collaboration with Europe. The multidisciplinary network involves researchers at all stages of their careers and allows them to become well connected amongst themselves and in Europe, ensuring that they are recognised as an important resource for the European Research Area, whether they remain abroad or choose to return. :Through the success of the network, EURAXESS Links is intended to contribute to the improvement of Europe''s position in the global competition for talent, and the reinforcement of research collaboration. :EURAXESS Links focuses on three types of activity: networking of researchers, information dissemination and helping expatriate researchers to collaborate with colleagues in Europe or to return to rewarding careers in Europe. Membership of EURAXESS Links is free. :social networking; people resource : | has parent organization: European Commission | nif-0000-00465 | SCR_013660 | EURAXESS Links | 2026-07-25 12:07:58 | 0 | ||||||||||
|
Christopher and Dana Reeve Foundation Resource Report Resource Website 10+ mentions |
Christopher and Dana Reeve Foundation (RRID:SCR_013550) | Christopher & Dana Reeve Foundation | institution | This foundation is dedicated to curing spinal cord injury by funding innovative research, and improving the quality of life for people living with paralysis through grants, information and advocacy. | foundation, funding, injury, research, spinal cord, grant, advocacy | ISNI: 0000 0001 0302 6132, nif-0000-00463, Wikidata: Q3075422, grid.428260.a, Crossref funder ID: 100001305 | https://ror.org/0430rna51 | SCR_013550 | Christopher and Dana Reeve Foundation, Christopher & Dana Reeve Foundation | 2026-07-25 12:07:53 | 11 | ||||||||
|
Corel Graphics Suite Resource Report Resource Website 10+ mentions |
Corel Graphics Suite (RRID:SCR_013674) | resource | Software package for editing and preparation of bitmap and vector graphics | Graphics, image processing, image analysis | SCR_013674 | 2026-07-25 12:07:56 | 22 | ||||||||||||
|
Leica Application Suite X Resource Report Resource Website 500+ mentions |
Leica Application Suite X (RRID:SCR_013673) | LAS X | resource | Software for image capture, processing and analysis with Leica fluorescence and confocal microscopes. | confocal, image, analysis, leica, microscope, microbiology | has parent organization: Leica Microsystems | Commercially available | http://www.leica-microsystems.com/products/microscope-software/software-for-life-science-research/las-easy-and-efficient/ | SCR_013673 | Leica LAS, Leica LAS AF Image Acquisition Software, Leica Application Suite X, Leica Application Suite X (LAS X), Leica LAS X Life Science Microscope Software, Leica LAS X LS, LASX, Leica LAS X Life Science software, LAS X | 2026-07-25 12:07:54 | 526 | |||||||
|
ARRS GoldMiner Resource Report Resource Website |
ARRS GoldMiner (RRID:SCR_013716) | image collection, data or information resource | An image repository that provides access to published, peer-reviewed medical images from biomedical journals. | image repository, medical image, peer review | PMID:17238591 | Public, Free | SCR_013716 | 2026-07-25 12:08:00 | 0 | ||||||||||
|
National Drug Code Directory Resource Report Resource Website |
National Drug Code Directory (RRID:SCR_013721) | ndc | Drug database published by the Food and Drug Administration of unique universal product identifiers for all drugs manufactured, prepared, propagated, compounded, or processed by it for commercial distribution. | drug database, drug code, FDA | Free, public | SCR_013721 | 2026-07-25 12:07:58 | 0 | |||||||||||
|
Approved Drug Products with Therapeutic Equivalence Evaluations Resource Report Resource Website 1+ mentions |
Approved Drug Products with Therapeutic Equivalence Evaluations (RRID:SCR_013727) | Orange Book | Database that contains drug products approved on the basis of safety and effectiveness by the Food and Drug Administration. | drugs, prescription drug, over-the-counter drug, OTC drug, Drug Products |
is listed by: U.S. Food and Drug Administration has parent organization: U.S. Food and Drug Administration |
Free, public | SCR_013727 | 2026-07-25 12:07:58 | 2 | ||||||||||
|
SciCurve Resource Report Resource Website |
SciCurve (RRID:SCR_013778) | software resource | A software application that provides visual representations and organization for systematic literature searches. Users can observe trends in scientific literature through graphic visualizations while using keyword searches to find related articles or compare trends within a given graphic. SciCurve also allows users to locate journals which publish literature in users' fields of interest. | software application, visual, systematic literature search, graphic visualization |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public | SCR_013778 | 2026-07-25 12:07:56 | 0 | ||||||||||
|
Zotero Resource Report Resource Website 500+ mentions |
Zotero (RRID:SCR_013784) | software resource | A software application that allows users to add and store research content directly from the web. Users can use the tool to add research content and bibliographic references directly to their Zotero library from their browser. The application stores PDFs, images, audio and video files, and snapshots of web pages on a single searchable interface. | software application, scientific literature, browser |
uses: Citation Style Language is listed by: Connected Researchers is related to: Connected Researchers is related to: Overleaf has parent organization: George Mason University; Virginia; USA |
Andrew W. Mellon Foundation ; Institute of Museum and Library Services ; Alfred P. Sloan Foundation |
Free, Public | SCR_013784 | 2026-07-25 12:08:00 | 813 | |||||||||
|
ACS ChemWorx Resource Report Resource Website |
ACS ChemWorx (RRID:SCR_013785) | software resource | A web application which provides tools to share references and generate bibliographies with colleagues, organize and access references, and track metrics for ACS articles. Articles are automatically synced to user libraries and are accessible from multiple devices. | web application, ACS, collaboration, references, bibliographies, library, articles |
uses: Colwiz is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public | SCR_013785 | 2026-07-25 12:08:02 | 0 | ||||||||||
|
RefSeqGene Resource Report Resource Website 50+ mentions |
RefSeqGene (RRID:SCR_013787) | information resource | A data set of defined genomic sequences used as reference standards for well-characterized genes. These standard nucleotide sequences serve as foundations for locating mutations, establishing conventions for numbering exons and introns, and defining the coordinates of other variations. Sequences are aligned to reference chromosomes. RefSeqGene is a subset of NCBI RefSeq. | data set, genomic sequences, reference standard |
is related to: RefSeq is related to: RefSeq is related to: RefSeq non-redundant proteins |
PMID:18927115 | Free, Public | SCR_013787 | NCBI RefSeqGene, RefSeqGene Project | 2026-07-25 12:08:00 | 53 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the nidm-terms Resources search. From here you can search through a compilation of resources used by nidm-terms and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that nidm-terms has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on nidm-terms then you can log in from here to get additional features in nidm-terms such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into nidm-terms you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
