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http://bioinfo.au.tsinghua.edu.cn/software/pcs/

A stand-alone package to identify and analyze conserved k-mers in pairwise alignment. This program shows high performance for identifying miRNA seed binding sites in 3''-UTRs.

Proper citation: Pairwise Conservation Scores - An Algorithm to Identify Conserved K-mers (RRID:SCR_013409) Copy   

•   Source: SciCrunch Registry

http://arrayoligosel.sourceforge.net/

Software program to systematically design gene specific long oligonucleotide probes for entire genomes, for the purpose of developing whole genome microarrays. For each open reading frame, the program optimizes the oligo selection based upon several parameters, including uniqueness in the genome, sequence complexity, lack of self-binding, GC content and proximity to the 3''end of the gene.

Proper citation: ArrayOligoSelector (RRID:SCR_013494) Copy   

•   Source: SciCrunch Registry

http://www.epsrc.ac.uk/pages/default.aspx

EPSRC is the main UK government agency for funding research and training in engineering and the physical sciences, investing more than £850 million a year in a broad range of subjects from mathematics to materials science, and from information technology to structural engineering. We support research into engineering, mathematics, physics, chemistry, materials science, information and communications technologies. EPSRC is a non-departmental public body funded by the UK government through the Department for Universities, Innovation and Skills. We employ around 300 staff in Swindon. We manage our portfolio through programmes. Research base programmes focus on investigator-led research and training. Business innovation programmes deliver our priority research themes and maximise the economic and social impact of the research and training we fund.

Proper citation: Engineering and Physical Sciences Research Council (RRID:SCR_013495) Copy   

•   Source: SciCrunch Registry

http://www.eisenlab.org/eisen/?page_id=42

Software to graphically browse results of clustering and other analyses from Cluster.

Proper citation: TreeView (RRID:SCR_013503) Copy   

•   Source: SciCrunch Registry

http://www.eisenlab.org/eisen/?page_id=41

Software to process fluorescent images of microarrays.

Proper citation: ScanAlyze (RRID:SCR_013507) Copy   

•   Source: SciCrunch Registry

http://tiger.dbs.nus.edu.sg/cnv-seq/

A method for detecting DNA copy number variation (CNV) using high-throughput sequencing., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: CNV-seq (RRID:SCR_013357) Copy   

•   Source: SciCrunch Registry

http://www.broadinstitute.org/annotation/medea/

THIS RESOURCE IS NO LONGER IN SERVCE, documented June, 2019.Comparative Genomic Visualization with Adobe Flash.

Proper citation: MEDEA (RRID:SCR_013356) Copy   

•   Source: SciCrunch Registry

http://www.ccam.uchc.edu

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 26,2023. CCAM is one of five National Technology Centers for Networks and Pathways, NTCNP, funded throught the NIH Technology Center for Networks and Pathways, TCNP. CCAM integrates new microscope technologies for making quantitative in vivo live cell measurements with new physical formulations and computational tools that will produce spatially realistic quantitative models of intracellular dynamics. :The overarching rationale for CCAMs research as a TCNP is that polarity in networks and pathways is determined by the spatial organization, subcellular distribution, dynamic behavior, interactions and functions of specific molecules within the cell. To investigate these relationships, we use a tripartite approach described as: :1) Measure - develop new tools for measuring spatially resolved dynamic behavior of molecules in cells, :2) Model - develop new methods for spatial modeling of biological systems. :3) Manipulate - develop new techniques for manipulating the spatial distribution of molecules in living cells. :Microscopy contrast enhancement protocol, biophotonics, subcellular :

Proper citation: Center for Cell Analysis and Modeling (RRID:SCR_013656) Copy   

•   Source: SciCrunch Registry

http://www.aaas.org/

It is an international non-profit organization dedicated to advancing science around the world by serving as an educator, leader, spokesperson and professional association. In addition to organizing membership activities, AAAS publishes the journal Science, as well as many scientific newsletters, books and reports, and spearheads programs that raise the bar of understanding for science worldwide. :AAAS History: Founded in 1848, AAAS serves some 262 affiliated societies and academies of science, serving 10 million individuals. Science has the largest paid circulation of any peer-reviewed general science journal in the world, with an estimated total readership of one million. The non-profit AAAS is open to all and fulfills its mission to advance science and serve society through initiatives in science policy; international programs; science education; and more. For the latest research news, log onto EurekAlert!, the premier science-news Web site, a service of AAAS. :Membership and Programs: Open to all, AAAS membership includes a subscription to Science. Four primary program areas fulfill the AAAS mission: * Science and Policy * International Activities * Education and Human Resources * Project 2061 :AAAS Mission: AAAS seeks to advance science, engineering, and innovation throughout the world for the benefit of all people. To fulfill this mission, the AAAS Board has set these broad goals: * Enhance communication among scientists, engineers, and the public; * Promote and defend the integrity of science and its use; * Strengthen support for the science and technology enterprise; * Provide a voice for science on societal issues; * Promote the responsible use of science in public policy; * Strengthen and diversify the science and technology workforce; * Foster education in science and technology for everyone; * Increase public engagement with science and technology; and * Advance international cooperation in science. :

Proper citation: AAAS (RRID:SCR_013659) Copy   

•   Source: SciCrunch Registry

http://ec.europa.eu/euraxess/links/index_en.htm

A networking tool for European researchers abroad. It provides information about research in Europe, European research policy, opportunities for research funding, for international collaboration and for trans-national mobility. Membership is free. :The objective of EURAXESS Links is a flourishing network of European researchers, scientists and scholars abroad. The network is already running in the USA since 2005 and has been launched in Japan in June 2008. The members of the network are informed about European Union research policies and made aware of career opportunities in Europe as well as opportunities for collaboration with Europe. The multidisciplinary network involves researchers at all stages of their careers and allows them to become well connected amongst themselves and in Europe, ensuring that they are recognised as an important resource for the European Research Area, whether they remain abroad or choose to return. :Through the success of the network, EURAXESS Links is intended to contribute to the improvement of Europe''s position in the global competition for talent, and the reinforcement of research collaboration. :EURAXESS Links focuses on three types of activity: networking of researchers, information dissemination and helping expatriate researchers to collaborate with colleagues in Europe or to return to rewarding careers in Europe. Membership of EURAXESS Links is free. :social networking; people resource :

Proper citation: EURAXESS Links (RRID:SCR_013660) Copy   

•   Source: SciCrunch Registry

http://www.christopherreeve.org/

This foundation is dedicated to curing spinal cord injury by funding innovative research, and improving the quality of life for people living with paralysis through grants, information and advocacy.

Proper citation: Christopher and Dana Reeve Foundation (RRID:SCR_013550) Copy   

•   Source: SciCrunch Registry

http://www.coreldraw.com/us/

Software package for editing and preparation of bitmap and vector graphics

Proper citation: Corel Graphics Suite (RRID:SCR_013674) Copy   

•   Source: SciCrunch Registry

https://www.leica-microsystems.com/products/microscope-software/details/product/leica-las-x-ls/

Software for image capture, processing and analysis with Leica fluorescence and confocal microscopes.

Proper citation: Leica Application Suite X (RRID:SCR_013673) Copy   

•   Source: SciCrunch Registry

http://goldminer.arrs.org/home.php

An image repository that provides access to published, peer-reviewed medical images from biomedical journals.

Proper citation: ARRS GoldMiner (RRID:SCR_013716) Copy   

•   Source: SciCrunch Registry

http://www.accessdata.fda.gov/scripts/cder/ndc

Drug database published by the Food and Drug Administration of unique universal product identifiers for all drugs manufactured, prepared, propagated, compounded, or processed by it for commercial distribution.

Proper citation: National Drug Code Directory (RRID:SCR_013721) Copy   

•   Source: SciCrunch Registry

http://www.fda.gov/Drugs/InformationOnDrugs/ucm129662.htm

Database that contains drug products approved on the basis of safety and effectiveness by the Food and Drug Administration.

Proper citation: Approved Drug Products with Therapeutic Equivalence Evaluations (RRID:SCR_013727) Copy   

•   Source: SciCrunch Registry

http://scicurve.com

A software application that provides visual representations and organization for systematic literature searches. Users can observe trends in scientific literature through graphic visualizations while using keyword searches to find related articles or compare trends within a given graphic. SciCurve also allows users to locate journals which publish literature in users' fields of interest.

Proper citation: SciCurve (RRID:SCR_013778) Copy   

•   Source: SciCrunch Registry

https://www.zotero.org

A software application that allows users to add and store research content directly from the web. Users can use the tool to add research content and bibliographic references directly to their Zotero library from their browser. The application stores PDFs, images, audio and video files, and snapshots of web pages on a single searchable interface.

Proper citation: Zotero (RRID:SCR_013784) Copy   

•   Source: SciCrunch Registry

https://hp.acschemworx.acs.org

A web application which provides tools to share references and generate bibliographies with colleagues, organize and access references, and track metrics for ACS articles. Articles are automatically synced to user libraries and are accessible from multiple devices.

Proper citation: ACS ChemWorx (RRID:SCR_013785) Copy   

•   Source: SciCrunch Registry

http://www.ncbi.nlm.nih.gov/refseq/rsg/

A data set of defined genomic sequences used as reference standards for well-characterized genes. These standard nucleotide sequences serve as foundations for locating mutations, establishing conventions for numbering exons and introns, and defining the coordinates of other variations. Sequences are aligned to reference chromosomes. RefSeqGene is a subset of NCBI RefSeq.

Proper citation: RefSeqGene (RRID:SCR_013787) Copy   

•   Source: SciCrunch Registry