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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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pyControl Resource Report Resource Website 1+ mentions |
pyControl (RRID:SCR_021612) | software resource | Open source software Python tool for behavioural experiment control. Part of pyControl system. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: pyControl project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/pycontrol/ | SCR_021612 | 2026-07-25 12:09:49 | 7 | |||||||||
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Open Ephys Resource Report Resource Website 1+ mentions |
Open Ephys (RRID:SCR_021624) | nonprofit organization | Organization mission is to advance understanding of brain by promoting community ownership of neuroscience tools.Collaborative effort to develop, document, and distribute open source tools for systems neuroscience.Project aims to distribute reliable open source software as well as tools for extracellular recording and stimulation. | develop open source tools, distribute open source tools, neuroscience tools, OpenBehavior | is listed by: OpenBehavior | DOI:10.1088/1741-2552/aa651f | SCR_021624 | Open Ephys | 2026-07-25 12:09:48 | 6 | |||||||||
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Implant for Reliable Diaphragm EMG Recordings in Awake, Behaving Rats Resource Report Resource Website |
Implant for Reliable Diaphragm EMG Recordings in Awake, Behaving Rats (RRID:SCR_026968) | instrument resource | Low-cost implant for reliable diaphragm EMG recordings in awake, behaving rats.Diaphragm EMG implant. | OpenBehavior, low-cost implant, diaphragm EMG implant, diaphragm EMG recordings, awake, behaving rats, electromyography, | is listed by: OpenBehavior | PMID:39890457 | https://edspace.american.edu/openbehavior/project/an-implant-for-diaphragm-emg-recordings-in-awake-rats/ | SCR_026968 | 2026-07-25 12:15:34 | 0 | |||||||||
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One-rat Turnstile Resource Report Resource Website |
One-rat Turnstile (RRID:SCR_025570) | ORT | instrument resource | Open-source apparatus to enable continuous individual monitoring, training, and testing of rats without removing them from their social environment. This system utilizes RFID technology to track individual animals, minimizing human intervention and providing precise behavioral data. | OpenBehavior, apparatus, continuous individual monitoring, training, testing, rat, without removing from social environment, | is listed by: OpenBehavior | PMID:38557586 | SCR_025570 | One-rat Turnstile (ORT) | 2026-07-25 12:15:03 | 0 | ||||||||
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LiftPose3D Resource Report Resource Website |
LiftPose3D (RRID:SCR_023049) | software application, software resource | Software tool for transforming 2D poses to 3D coordinates on labaratory animals. Used for kinematic studies of laboratory animals. Tracking movements in three dimensions from behaving flies, mice, rats, and non-human primates. | OpenBehavior, transforming 2D poses to 3D coordinates, kinematic studies, laboratory animals, tracking movements | is listed by: OpenBehavior | SNSF Project ; SNSF Eccellenza ; European Union Horizon 2020 ; Mexican National Council for Science and Technology |
PMID:34354294 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=LiftPose3D | SCR_023049 | 2026-07-26 09:08:04 | 0 | |||||||
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M3 Platform Resource Report Resource Website |
M3 Platform (RRID:SCR_023425) | software application, software resource | Software neuroscience laboratory environment for simultaneous neuronal imaging and behavioral monitoring. McGill-Mouse-Miniscope Touchscreen Behavior Platform. Standardized approach for high throughput imaging of neuronal dynamics during behavior. | OpenBehavior, touchscreen behavioral platform, calcium imaging, animal behavioral testing.standardized measurements, neuronal activity, behavioral tasks, disease modeling, mice | is listed by: OpenBehavior | Canada First Research Excellence Fund | PMID:32691490 | Free, Available for download, Freely available, | https://edspace.american.edu/openbehavior/project/m3-platform-the-mcgill-mouse-miniscope-touchscreen-behavior-platform/ | SCR_023425 | McGill-Mouse-Miniscope (M3) Platform, McGill-Mouse-Miniscope platform | 2026-07-26 09:08:07 | 0 | ||||||
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LabNet Resource Report Resource Website |
LabNet (RRID:SCR_023712) | software application, software resource | Open source software for parallel control over multiple behavioral systems.C++ optimized control layer software to give access to Raspberry Pi connected hardware. Suitable for time critical operations, and to be simple to expand. Used for general automation in experimental laboratories with its control PC located at some distance. | OpenBehavior, parallel control over multiple behavioral systems, C++ optimized control layer, access to Raspberry Pi connected hardware, | is listed by: OpenBehavior | German Research Foundation | PMID:36583654 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/labnet/ | SCR_023712 | 2026-07-26 09:08:12 | 0 | |||||||
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Automated Rodent Tracker Resource Report Resource Website |
Automated Rodent Tracker (RRID:SCR_021510) | ART | software application, software resource, data processing software | Software tool to automatically track rodent position and movement.Used to track head movements, body movements and also aspects of body size. It is able to identify certain behaviours from video footage too, such as rotations, moving forwards, interacting with objects and staying still. | Track rodent position, track movement, track head movements, track body movements, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Rodent Tracker project |
DOI:10.1016/j.jneumeth.2017.04.006 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/automated-rodent-tracker-art/ | SCR_021510 | 2026-07-26 09:07:46 | 0 | |||||||
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ToxTrac Resource Report Resource Website 1+ mentions |
ToxTrac (RRID:SCR_021502) | software application, image processing software, software resource, data processing software | Software tool for tracking organisms. | Tracking organisms, tracking fish, tracking insects, tracking rodents, behavior measurement, freely moving, OpenBehavior |
is listed by: OpenBehavior is related to: ToxTrac project |
DOI:10.1111/2041-210x.12874 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/toxtrac/ | SCR_021502 | 2026-07-27 09:36:22 | 9 | ||||||||
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Pyper Resource Report Resource Website 1+ mentions |
Pyper (RRID:SCR_021511) | software application, image processing software, software resource, data processing software | Software tool for motion tracking.Provides real time or pre recorded motion tracking of specimen in open field. Used to track path of object of interest in live feed from camera or recorded video. Used to track rodents in open field maze as well as retina of mice.New version v2 of Pyper allows to customise image processing to track different kind of objects. | Motion tracking, open field, track path of object, live feed from camera, live feed recorded video, track rodents, open field maze, OpenBehavior |
is listed by: OpenBehavior is related to: Pyper project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/pyper/ | SCR_021511 | Pyper v2 | 2026-07-27 09:36:23 | 2 | ||||||||
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Pypreclin Resource Report Resource Website 1+ mentions |
Pypreclin (RRID:SCR_021526) | software application, image processing software, software resource, data processing software | Software Python tool to processes raw macaque fMRI images using algorithms embedded in automatic pipeline. | Raw macaque fMRI images, fMRI images, macaque images, Python, OpenBehavior |
is listed by: OpenBehavior is related to: Pypreclin project |
DOI:10.1016/j.neuroimage.2019.116353 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/pypreclin/ | SCR_021526 | 2026-07-27 09:36:22 | 5 | ||||||||
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Live Mouse Tracker Toolkit Analysis Resource Report Resource Website |
Live Mouse Tracker Toolkit Analysis (RRID:SCR_024592) | LMT Toolkit | web application, software resource | Open source web application created to analyze Live Mouse Tracker data easily and intuitively. Used to check reliability and to make some analysis of data from Live Mouse Tracker experiments. LMT stores data in SQLite files that requires some computer skills, but LMT-toolkit makes it easy to compute and extract behavioral profiles for each animal tested following step-by-step process. | OpenBehavior, check LMT data reliability, analyze Live Mouse Tracker data, compute and extract behavioral profiles, |
is listed by: OpenBehavior is related to: Live Mouse Tracker analysis is related to: Live Mouse Tracker project |
Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/live-mouse-tracker/ | SCR_024592 | , LMT Toolkit, lmt toolkit analysis, LMT toolkit analysis, LMT-toolkit, LMT-Toolkit Analysis, Live Mouse Tracker Toolkit | 2026-07-27 09:37:10 | 0 | |||||||
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Mousebytes Resource Report Resource Website 1+ mentions |
Mousebytes (RRID:SCR_017904) | service resource, data or information resource, data repository, database, storage service resource | Open access database for all cognitive data collected from touchscreen related tasks. Performs data comparison and interactive data visualization for any data uploaded onto the site. There are also guidelines and video tutorials available. | Data, mouse, cognition, imaging, genomics, integration, bio.tools, OpenBehavior |
is listed by: Debian is listed by: bio.tools is listed by: OpenBehavior has parent organization: Western University; Ontario; Canada |
Weston Brain Institute (Canada) ; Canadian Institute of Health Research ; NSERC ; Alzheimer’s Society of Canada ; Canadian First Research Excellence Fund (BrainsCAN) ; Brain Canada |
PMID:31825307 | Free, Freely available | SCR_021549, SCR_021598, r3d100013886, biotools:Mousebytes | https://bio.tools/MouseBytes, https://edspace.american.edu/openbehavior/project/touchscreen-cognition-mousebytes/, https://doi.org/10.17616/R31NJN7I | SCR_017904 | MouseBytes | 2026-07-28 09:44:35 | 4 | |||||
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Dual port Lick Detector project Resource Report Resource Website |
Dual port Lick Detector project (RRID:SCR_021454) | instrument resource, project portal, portal, data or information resource | Project related to measuring licking behavior in mice.System includes device used for both real time measurement and manipulation of licking behavior in head fixed mice. System provides distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector. | Building lick detector files, lick detector, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: Dual Port Lick Detector |
DOI:10.1152/jn.00500.2018 | Free, Freely available | SCR_021454 | Dual port Lick Detector | 2026-07-28 09:45:21 | 0 | ||||||||
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Cerebro Wireless Optogenetic System project Resource Report Resource Website |
Cerebro Wireless Optogenetic System project (RRID:SCR_021474) | instrument resource, project portal, portal, data or information resource | Project related to wireless controlled optogenetic stimulation. Provides system for wireless optogenetic stimulation developed in Karpova Lab with ability to be customized.Features Cerebro,rechargeable, battery powered wireless receiver;head implant containing optical fibers and two independent laser diodes; base station for transmitting radio signals to Cerebro, controlled by Windows computer via USB or by TTL; charging dock; and Xavier, user friendly GUI for sending and logging base station commands. | Wireless optogenetic stimulation, Janelia open source hardware, Janelia open source software, Cerebro battery powered wireless receiver, head implant, Xavier, OpenBehavior, Instrument | is listed by: OpenBehavior | Free, Freely available | SCR_021474 | Cerebro Wireless Optogenetic System | 2026-07-28 09:45:14 | 0 | |||||||||
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4 Port Nose Poke Resource Report Resource Website |
4 Port Nose Poke (RRID:SCR_021592) | instrument resource, project portal, portal, data or information resource | Portal provides open source nose poke system utilizing Arduino microcontroller, several low cost electronic components, and PVC behavioral arena. System developed by University of Basel scientists for use in behavior experiments. | Instrument, motor behavior, behavioral arena, nose poke system, Arduino microcontroller, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of Basel; Basel; Switzerland |
DOI:10.1016/j.mex.2016.04.002 | Free, Freely available | SCR_021592 | 2026-07-28 09:45:13 | 0 | |||||||||
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Open Source platform for Sensory Tasks project Resource Report Resource Website |
Open Source platform for Sensory Tasks project (RRID:SCR_021468) | instrument resource, project portal, portal, data or information resource | Project related to report animal decision in response to stimulus.Includes software tool as Arduino and Python based platform for Go or No Go sensory task to report animal decision in response to stimulus provided by University of Melbourne, Melbourne, VIC, Australia scientists. | Go or No Go sensory task, report animal decision, stimulus response, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.3389/fncel.2017.00156 | Free, Freely available | SCR_021468 | Open Source platform for Sensory Tasks | 2026-07-28 09:45:14 | 0 | ||||||||
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DeepEthogram Resource Report Resource Website 1+ mentions |
DeepEthogram (RRID:SCR_022355) | DEG | software application, software resource, data analysis software, data processing software | Software tool to extract relevant features from images and use time series of these features to classify whether given behavior is present in each frame of video recording.machine learning pipeline for supervised behavior classification from raw pixels. Performs action recognition ,automated behavior classification, over frames. Used for automated behavior classification to detect and track behavior over time. | OpenBehavior, behavioral data analysis, video analysis, offline analysis software, behavior measurement, supervised behavior classification from raw pixels | is listed by: OpenBehavior | DOI:10.7554/eLife.63377 | Free, Available for download, Freely available | https://github.com/jbohnslav/deepethogram | SCR_022355 | 2026-07-28 09:45:30 | 3 | |||||||
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MRI Compatible Microdrive Resource Report Resource Website |
MRI Compatible Microdrive (RRID:SCR_022352) | instrument resource, project portal, portal, data or information resource | MRI compatible microdrive that can precisely position electrodes without causing significant imaging artifacts. | OpenBehavior, Instrument, device, microdrive, neural signal analysis, neural recording, electrical recording, electrode precisely positioning, MRI compatible equipment | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0495-20.2021 | Free, Freely available | https://osf.io/tnpmk/ | SCR_022352 | 2026-07-28 09:45:30 | 0 | ||||||||
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DeepBhvTracking Resource Report Resource Website 1+ mentions |
DeepBhvTracking (RRID:SCR_022351) | software application, software resource, data analysis software, data processing software | Software tool as novel tracking algorithm that combines deep learning and background subtraction. | OpenBehavior, movement tracking, locomotion and environmental interaction measure, behavior tracking method for laboratory animals | is listed by: OpenBehavior | DOI:10.3389/fnbeh.2021.750894 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/deepbhvtracking/ | SCR_022351 | 2026-07-28 09:45:39 | 1 |
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