Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
ISCBFM - International Society for Cerebral Blood Flow and Metabolism Resource Report Resource Website |
ISCBFM - International Society for Cerebral Blood Flow and Metabolism (RRID:SCR_001989) | ISCBFM | k- program resource, narrative resource, training resource, data or information resource, meeting resource, topical portal, portal | The International Society for Cerebral Blood Flow & Metabolism is a corporation operated exclusively for the purpose of promoting the advancement of education in the science of cerebral blood flow and metabolism throughout the world. The ISCBFM produces a quarterly newsletter, an official journal (Journal of Cerebral Blood Flow & Metabolism), have a yearly meeting, opportunities to host summer schools and a job board. ISCBFM members organize summer schools which are courses that have the aim to bring together young and experienced scientists for educational purposes. The biennial Brain Meetings also have a substantial part of the time allocated for educational purposes for young scientists interested in the field of cerebral blood flow and metabolism. Preference will be given to suggestions that are seen as a complement to scheduled courses in connection with the Brain Meetings and to courses that are given in between Brain Meetings. | brain, cerebral blood flow, human, metabolism, newsletter, summer school, k-12 | is related to: Journal of Cerebral Blood Flow and Metabolism | nif-0000-10674 | SCR_001989 | International Society for Cerebral Blood Flow and Metabolism, International Society for Cerebral Blood Flow Metabolism, ISCBFM - International Society for Cerebral Blood Flow Metabolism | 2026-07-28 09:40:19 | 0 | ||||||||
|
Organization for Human Brain Mapping Resource Report Resource Website 1+ mentions |
Organization for Human Brain Mapping (RRID:SCR_001978) | data or information resource, organization portal, topical portal, portal | International society dedicated to advancing understanding of anatomical and functional organization of human brain using neuroimaging. Primary function of society is to provide educational forums for exchange of up-to-the-minute and groundbreaking research across neuroimaging methods and applications. OHBM achieves this through its member led committees and Annual Meeting that is held in different locations throughout the world. | dti, eeg, fmri, functional, anatomical, brain, brain imaging, brain mapping, cognitive neuroscientists, human, imaging genetics, research, structural, structural mri, tractography, transcranial magnetic stimulation, neuroimaging, meg | nif-0000-10633 | SCR_001978 | OHBM | 2026-07-28 09:40:18 | 1 | ||||||||||
|
Shiley-Marcos Alzheimer's Disease Research Center Resource Report Resource Website 1+ mentions |
Shiley-Marcos Alzheimer's Disease Research Center (RRID:SCR_001928) | UCSD ADRC | disease-related portal, data or information resource, organization portal, topical portal, portal | The UCSD ADRC conducts a wide variety of research studies dedicated to understanding the causes, clinical features, and treatments for Alzheimer's disease and related memory disorders. The goal of the center is to discover ways to prevent and eradicate the disease. The Center aims to maintain research subjects, clinical resources, and clinical data to support ongoing and proposed research and to assist in the development of new clinical and interdisciplinary research. An Alzheimer's brain bank with well characterized cases, including Mild Cognitive Impairment and Lewy Body disease, is maintained at the Center. | alzheimer's disease, brain, cognitive, dementia, disease, disorder, impairment, lewy body disease, memory, neurological, neuropathologist, neuropsychological | has parent organization: University of California at San Diego; California; USA | Alzheimer's disease, Lewy Body disease, Memory disorder | Public | nif-0000-10501 | SCR_001928 | University of California at San Diego Shiley-Marcos Alzheimer's Disease Research Center | 2026-07-28 09:40:28 | 1 | ||||||
|
VoxBo Resource Report Resource Website 10+ mentions |
VoxBo (RRID:SCR_002166) | VoxBo | software application, software resource, data processing software, image processing software, image analysis software | Software package for brain image manipulation and analysis, focusing on fMRI and lesion analysis. VoxBo can be used independently or in conjunction with other packages. It provides GLM-based statistical tools, an architecture for interoperability with other tools (they encourage users to incorporate SPM and FSL into their processing pipelines), an automation system, a system for parallel distributed computing, numerous stand-alone tools, decent wiki-based documentation, and lots more. | fmri, neuroimaging, brain, functional, statistical, volume, preprocessing, analysis, display, format conversion, linear, three dimensional display, workflow, lesion, analyze, c++, console (text based), dicom, image display, linux, macos, microsoft, magnetic resonance, nifti, no input/output (daemon), overlap metrics, posix/unix-like, quantification, regression, resampling, sinc function interpolation, spatial transformation, statistical operation, visualization, windows |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is listed by: Debian has parent organization: neurodebian |
NIDA R01DA014418; NIMH R01MH073529 |
PMID:22348882 | Free, Available for download, Freely available | nif-0000-00353 | https://sources.debian.org/src/voxbo/, https://github.com/kimberg/voxbo | http://www.voxbo.org/ | SCR_002166 | 2026-07-28 09:40:34 | 13 | ||||
|
MS lesion segmentation challenge 2008 Resource Report Resource Website 1+ mentions |
MS lesion segmentation challenge 2008 (RRID:SCR_002425) | MS Lesion Segmentation 08 | data or information resource, data set, narrative resource, training material | Training material for the MS lesion segmentation challenge 2008 to compare different algorithms to segment the MS lesions from brain MRI scans. Data used for the workshop is composed of 54 brain MRI images and represents a range of patients and pathology which was acquired from Children's Hospital Boston and University of North Carolian. Data has initially been randomized into three groups: 20 training MRI images, 24 testing images for the qualifying and 8 for the onsite contest at the 2008 workshop. The downloadable online database consists now of the training images (including reference segmentations) and all the 32 combined testing images (without segmentations). The naming has not been changed in comparison to the workshop compeition in order to allow easy comparison between the workshop papers and the online database papers. One dataset has been removed (UNC_test1_Case02) due to considerable motion present only in its T2 image (without motion artifacts in T1 and FLAIR). Such a dataset unfairly penalizes methods that use T2 images versus methods that don't use the T2 image. Currently all cases have been segmented by expert raters at each institution. They have significant intersite variablility in segmentation. MS lesion MRI image data for this competition was acquired seperately by Children's Hospital Boston and University of North Carolina. UNC cases were acquired on Siemens 3T Allegra MRI scanner with slice thickness of 1mm and in-plane resolution of 0.5mm. To ease the segmentation process all data has been rigidly registered to a common reference frame and resliced to isotrophic voxel spacing using b-spline based interpolation. Pre-processed data is stored in NRRD format containing an ASCII readable header and a separate uncompressed raw image data file. This format is ITK compatible. If you want to join the competition, you can download data set from links here, and submit your segmentation results at http://www.ia.unc.edu/MSseg after registering your team. They require team name, password, and email address for future contact. Once experiment is completed, you can submit the segmentation data in a zip file format. Please refer submission page for uploading data format. | magnetic resonance, competition, challenge, segmentation, segment, ms lesion, brain, mri scan, mri, image collection |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of North Carolina at Chapel Hill School of Medicine; North Carolina; USA |
Multiple Sclerosis | NIH Roadmap for Medical Research ; NIBIB U54 EB005149-01 |
Free, Available for download, Freely available | nlx_155799 | SCR_002425 | 2008 MICCAI MS Lesion Segmentation Challenge | 2026-07-28 09:40:25 | 1 | |||||
|
Human Brain Project EU Resource Report Resource Website 50+ mentions |
Human Brain Project EU (RRID:SCR_002241) | HBP EU, HBP, European HBP, | funding resource, data or information resource, organization portal, portal | Global, collaborative effort for neuroscience, medicine and computing to understand brain, its diseases and its computational capabilities. Goal is to obtain access to research, data sources, platforms and infrastructures offered by other organisations, and enabling organizations outside HBP to use HBP platforms to pursue their own research. Coordinating these activities is the responsibility of the European Research Programme. | brain, ethics, neuroscience, medicine, computing, treatment, brain disease, neuroinformatics, software development, computational modeling, software, connectomics |
is related to: BigBrain is related to: Julich-Brain Cytoarchitectonic Atlas is parent organization of: subcellular application is parent organization of: Subcellular App |
Restricted | nlx_155553 | SCR_002241 | European Human Brain Project | 2026-07-28 09:40:35 | 67 | |||||||
|
Histology of Nervous Tissue Laboratory Course Resource Report Resource Website |
Histology of Nervous Tissue Laboratory Course (RRID:SCR_002367) | Histology of Nervous Tissue | data or information resource, narrative resource, training material | A website for a neuroscience lab class from the University of South Carolina that contains images of different parts of the nervous system and allows students to identify each part and answer questions about it. You should be able to (a) recognize nervous tissue in routine histological sections; (b) distinguish peripheral nerves from dense CT and smooth muscle; (c) recognize the morphological differences between myelinated and unmyelinated nerves at both the light microscopic and electron microscopic levels; (d) recognize nerve cell bodies and their component parts; (e) identify and differentiate dendrites and axons; (f) understand and identify various types of neuroglia, including Schwann cells; (g) understand and identify the structural relationship of the Schwann cell cytoplasm and plasma membrane enveloping axons; (h) understand the general features of nerve synapses. You should be able to draw nerves, cell bodies, Nodes of Ranvier, synapses etc. as they would appear under both the electron and light microscopes. | brain, class, histology, laboratory, material, nervous system, neuron, microscopy, neuroscience, peripheral nerve, light microscopy, electron microscopy, nerve cell, neuroglia, nervous tissue, image, glass slide, slide | has parent organization: University of South Carolina School of Medicine; South Carolina; USA | nif-0000-21192 | SCR_002367 | Histology of Nervous Tissue Laboratories 9 and 10 | 2026-07-28 09:40:36 | 0 | ||||||||
|
iBEAT Resource Report Resource Website 10+ mentions |
iBEAT (RRID:SCR_002470) | iBEAT | software application, image analysis software, software resource, data processing software, image processing software, software toolkit | A toolbox with graphical user interfaces for processing infant brain MR images. Longitudinal (or single-time-point) multimodality (including T1, T2, and FA) (or single-modality) data can be processed using the toolbox. Main functions of the software (step by step) include image preprocessing, brain extraction, tissue segmentation and brain labeling. Linux operating system (64 bit) is required. A workstation or server with memory >8G is recommended for processing many images simutaneously. The graphical user interfaces and overall framework of the software are implemented in MATLAB. The image processing functions are implemented with the combination of C/C++, MATLAB, Perl and Shell languages. Parallelization technologies are used in the software to speed up image processing. | atlas application, atlas data, data resource, image display, information resource, magnetic resonance, registration, segmentation, spatial transformation, visualization, warping, mri, infant, brain |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of North Carolina at Chapel Hill School of Medicine; North Carolina; USA |
PMID:23055044 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_155851 | http://www.nitrc.org/projects/ibeat | SCR_002470 | Infant Brain Extraction and Analysis Toolbox, LIBRA, iBEAT: Infant Brain Extraction and Analysis Toolbox | 2026-07-28 09:40:26 | 34 | |||||
|
Washington University School of Medicine Knight Alzheimers Disease Research Center Resource Report Resource Website 1+ mentions |
Washington University School of Medicine Knight Alzheimers Disease Research Center (RRID:SCR_000210) | ADRC, Knight ADRC | tissue bank, material resource, data or information resource, organization portal, biomaterial supply resource, brain bank, portal | The Charles F. and Joanne Knight Alzheimer Disease Research Center (Knight ADRC) supports researchers and our surrounding community in their pursuit of answers that will lead to improved diagnosis and care for persons with Alzheimer disease (AD). The Center is committed to the long-term goal of finding a way to effectively treat and prevent AD. The Knight ADRC facilitates advanced research on the clinical, genetic, neuropathological, neuroanatomical, biomedical, psychosocial, and neuropsychological aspects of Alzheimer disease, as well as other related brain disorders. | genetic, alzheimers disease, biomedical, brain, clinical, cure, dementia, development, disease, neuroanatomical, neurodegenerative disease, neuropathological, neuropsychological, research, senile, treatment, aging |
has parent organization: Washington University in St. Louis; Missouri; USA is parent organization of: Washington University School of Medicine Knight ADRC Request Center Resources Core Facility |
Alzheimer's disease, Dementia, Aging | NIA P50 AG05681 | Available to affiliated researchers, Public | SCR_008779, nif-0000-11285, nlx_144153 | SCR_000210 | Knight Alzheimers Disease Research Center, Washington University School of Medicine in St. Louis Knight ADRC, ADRC, WU Knight ADRC, WUADRC, Knight ADRC, Knight Alzheimer's Disease Research Center, Charles F. and Joanne Knight Alzheimer's Disease Research Center | 2026-07-28 09:39:57 | 2 | |||||
|
International Consortium for Brain Mapping Resource Report Resource Website 1+ mentions |
International Consortium for Brain Mapping (RRID:SCR_000445) | ICBM | data or information resource, database, atlas, reference atlas | Probabilistic reference system for human brain, including tools to establish this reference system for structural and functional anatomy on both macroscopic (in vivo) and microscopic (post mortem) levels. Project has expanded neuroinformatics tools for data sharing and created Conforming Site System that allows laboratories worldwide to contribute data to evolving atlas. Through implementation of ICBM data sharing policy space, they are fostering data exchange while still providing for scientific credit assignment and subject confidentiality.ICBM atlas collection consists of ICBM Template, tool developed to provide reference that includes both set of coordinates and associated anatomical labels; the ICBM 452 T1 atlas, average of T1-weighted MRIs of normal young adult brains, ICBM probabilistic atlases, and Cytoarchitectonic Atlas. ICBM Subject Database is web-based database infrastructure that simplifies image dataset collection, organization and dissemination. Authorized users may view representations of data and form collections of datasets that can be downloaded or fed directly into Pipeline environment for distributed processing and analysis. | Brain atlases, fmri, genetics, anatomy, architecture, atlas, brainstem, cerebellum, cortex, gray matter, histology, imaging, map, morphology, mri, neuroinformatics, pet, receptor, segmentation, subcortical, volume, warping, white matter, brain, early adult human, structural anatomy, functional anatomy, in vivo, post mortem, neuroanatomy, image collection |
is related to: MINC/Atlases has parent organization: Laboratory of Neuro Imaging |
NIMH | PMID:9343592 PMID:11522763 |
Free, Freely available | nif-0000-00103, SCR_001948, nif-0000-00041 | https://resource.loni.usc.edu/ | http://www.loni.ucla.edu/ICBM/Databases/, http://www.loni.usc.edu/ICBM/ | SCR_000445 | , ICBM Subject Database, ICBM - International Consortium for Brain Mapping, International Consortium for Brain Mapping (ICBM), ICBM Atlas | 2026-07-28 09:39:59 | 6 | |||
|
Talairach Daemon Resource Report Resource Website 100+ mentions |
Talairach Daemon (RRID:SCR_000448) | talairach.org | software application, data or information resource, database, software resource, atlas | Software automated coordinate based system to retrieve brain labels from the 1988 Talairach Atlas. Talairach Daemon database contains anatomical names for brain areas using x-y-z coordinates defined by the 1988 Talairach Atlas. | anatomical structure, atlas, fmri, pet, activation foci, cognition, talairach, human, brain, brain mapping, atlas application, database application, atlas application, database application, java, magnetic resonance, os independent, label, probability map, FASEB list |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is related to: WFU PickAtlas has parent organization: University of Texas Health Science Center at San Antonio; Texas; USA |
EJLB Foundation ; Human Brain Project |
PMID:10912591 | Free, Available for download, Freely available | nif-0000-00042 | http://www.nitrc.org/projects/tal-daemon | SCR_000448 | Talairach Software | 2026-07-28 09:39:59 | 383 | ||||
|
ECNP Resource Report Resource Website 1+ mentions |
ECNP (RRID:SCR_000501) | ECNP | data or information resource, community building portal, portal | A pan-European scientific association to encourage research across the neurosciences and to translate new knowledge on fundamental disease mechanisms into new medicines and clinical applications. As an interdisciplinary forum for the science and treatment of disorders of the brain, they promote the communication and cross- fertilization of high-quality experimental and clinical research across the field of neuroscience. ECNP is a non-profit member-based association, independently governed and self-funded. ECNP is a public-interest-serving entity. | brain, neuroscience, disease mechanism, medicine, clinical, disease | is parent organization of: Preclinical Data Forum Network | Brain disorder | nlx_158605 | SCR_000501 | European College of Neuropsychopharmacology, ECNP - neuroscience applied | 2026-07-28 09:40:00 | 1 | |||||||
|
Pediatric Brain Tumor Consortium Resource Report Resource Website 1+ mentions |
Pediatric Brain Tumor Consortium (RRID:SCR_000658) | PBTC | data or information resource, organization portal, consortium, portal | The PEDIATRIC BRAIN TUMOR CONSORTIUM (PBTC) is a multidisciplinary cooperative research organization devoted to the study of correlative tumor biology and new therapies for primary CNS tumors of childhood. PBTC's mission is to contribute rapidly and effectively to the understanding and cure of these tumors through the conduct of multi-center, multidisciplinary, innovative studies with designs and analyses based on uniformly high quality statistical science. While the primary mission of the PBTC is to identify through laboratory and clinical science superior treatment strategies for children with brain cancers, the PBTC investigators recognize their profound responsibility to meet the special needs of the children and families as they face this enormous challenge. Members are committed to working within their institutions and communities to improve support services and follow up care for these patients and their families. The PBTC's primary objective is to rapidly conduct novel phase I and II clinical evaluations of new therapeutic drugs, new biological therapies, treatment delivery technologies and radiation treatment strategies in children from infancy to 21 years of age with primary central nervous system (CNS) tumors. A second objective is to characterize reliable markers and predictors (direct or surrogate) of brain tumors' responses to new therapies. The Consortium conducts research on brain tumor specimens in the laboratory to further understand the biology of pediatric brain tumors. A third objective is to develop and coordinate innovative neuro-imaging techniques. Through the PBTC's Neuro-Imaging Center, formed in May 2000, research to evaluate new treatment response criteria and neuro-imaging methods to understand regional brain effects is in progress. These imaging techniques can also advance understanding of significant neuro-toxicity in a developing child's central nervous system. The Neuro-Imaging Center is supported in part by private sources - grants from foundations and non-profit organizations - in addition to the NCI. As an NCI funded Consortium, the Pediatric Brain Tumor Consortium (PBTC) is required to make research data available to other investigators for use in research projects. An investigator who wishes to use individual patient data from one or more of the Consortium's completed and published studies must submit in writing a description of the research project, the PBTC studies from which data are requested, the specific data requested, and a list of investigators involved with the project and their affiliated research institutions. A copy of the requesting investigator's CV must also be provided. Participating Institutions: Children's Hospital of Philadelphia, Children's National Medical Center (Washington, DC), Children's Memorial Hospital (Chicago), Duke University, National Cancer Institute, St. Jude Children's Research Hospital, Texas Children's Cancer Center, University of California at San Francisco, and University of Pittsburgh. | human, child, pediatric, brain, tumor, cancer, brain cancer, central nervous system, imaging | NCI | grid.477819.4, nlx_143885 | https://ror.org/00hj21c17 | SCR_000658 | 2026-07-28 09:40:02 | 1 | ||||||||
|
Autism Tissue Program Resource Report Resource Website 10+ mentions |
Autism Tissue Program (RRID:SCR_000651) | ATP | disease-related portal, data or information resource, database, funding resource, topical portal, portal | Autism research program that makes available post-mortem brain tissue to qualified scientists all over the world. Working directly with tissue banks, organ procurement agencies, medical examiners and the general public, this is the largest program dedicated to increasing and enhancing the availability of post-mortem brain tissue for basic research in autism. To date, the ATP has collected and stored more than 170 brains in their repositories at Harvard (US) and Oxford (UK). These brains are processed by formalin fixation and/or snap frozen to properly provide high quality tissue of all brain regions, in support of biological research in autism. The ATP is unique in that they diligently pursue all available clinical data (pre and post mortem) on tissue donors in order to create the most biologically relevant brain repository for autism research. These data, together with tissue resources from both banks and associated repositories, are presented to all interested researchers through their extensive web-based data portal (login required). The ATP is not a brain bank, but works directly with the Harvard Brain Tissue Resource Center in Boston (HBTRC), Massachusetts to serve as its tissue repository. This program augments brain bank functions by: * Creating the most biologically relevant brain tissue repository possible * Fully covering all costs associated with brain extraction and transfer to the repositories at Harvard (US and Canada) and Oxford (UK). * Providing scientific oversight of tissue distributions * Overseeing and managing all tissue grants * Clinically phenotyping and acquiring extensive medical data on all of their donors * Providing continuing family support and communication to all of their donors * Directly supporting researchers to facilitate autism research * Maintaining a robust web based data management and secure on-line global interface system * Developing and supporting ATP established scientific initiatives * Actively providing public outreach and education The ATP is not a clinical organ procurement agency, but rather they facilitate the wishes of donors and families to donate their tissue to autism research. Through the ATP's established international infrastructure, they work with any accredited tissue bank, organ procurement agency, or medical examiner that receives a family's request to donate their loved one's tissue to the program. Once contacted, the ATP will insure that the family's request to donate their loved one's tissue is faithfully met, covering all costs to the family and partnering agency as well as ensuring the tissues' proper and rapid transport to the ATP's repository at the Harvard Brain Tissue Resource Center (HBTRC) in Boston, Massachusetts. | autism, brain, tissue, clinical data, post-mortem, brain tissue, donate, brain donation, autism spectrum disorder, pervasive development disorder, formalin fixation, snap frozen, tissue section, stained slide, dna, skin fibroblast culture, control, clinical, clinical neuroinformatics, imaging genomics, magnetic resonance, optical imaging, FASEB list |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Autism Speaks has parent organization: Harvard Brain Tissue Resource Center |
Autism, Autism spectrum disorder, Pervasive Development Disorder, Control | Autism Speaks | PMID:16933088 | Free, Freely available | nif-0000-10160 | http://www.brainbank.org/, http://www.autismtissueprogram.org/site/c.nlKUL7MQIsG/b.5183271/k.BD86/Home.htm | SCR_000651 | 2026-07-28 09:40:02 | 28 | ||||
|
Human Brain Connectivity Database Resource Report Resource Website |
Human Brain Connectivity Database (RRID:SCR_001594) | Human Brain Connectivity Database | data or information resource, data set, bibliography | Preliminary database of neuroanatomical connectivity reports specifically for the human brain, which have been manually curated. It includes details (based on manual literature curation) of tract tracing or related connectivity studies conducted in human brain tissue. This database and user interface will be expanded and improved in the near future. | neuroanatomy, brain, tract tracing, connectivity | has parent organization: Brain Architecture Project | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_153841 | SCR_001594 | 2026-07-28 09:40:19 | 0 | ||||||||
|
Waxholm Space Resource Report Resource Website 10+ mentions |
Waxholm Space (RRID:SCR_001592) | WHS, WSA, WSS | narrative resource, data or information resource, standard specification, atlas, waxholm atlas | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 1st, 2023. Coordinate based reference space for the mapping and registration of neuroanatomical data. Users can download image volumes representing the canonical Waxholm Space (WHS) adult C57BL/6J mouse brain, which include T1-, T2*-, and T2-Weighted MR volumes (generated at the Duke Center for In-Vivo Microscopy), Nissl-stained optical histology (acquired at Drexel University), and a volume of labels. All volumes are represented at 21.5μ isotropic resolution. Datasets are provided as gzipped NIFTI files. | mouse WHS atlas, neuroanatomy, mapping, atlas, digital, brain, reference, registration, neuroanatomical, data, mri |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Waxholm Space is related to: Duke University; North Carolina; USA is related to: PMOD Software is related to: ITK-SNAP has parent organization: International Neuroinformatics Coordinating Facility has parent organization: University of Oslo; Oslo; Norway works with: MeshView works with: VisuAlign |
PMID:20600960 PMID:21304938 |
THIS RESOURCE IS NO LONGER IN SERVICE | SCR_009594, nlx_153838, nlx_155839 | http://software.incf.org/software/waxholm-space/home, http://www.nitrc.org/projects/incf_waxholm-sp | SCR_001592 | Waxholm Space Atlas, Waxholm Space, Waxholm Standard Space, Mouse WHS atlas | 2026-07-28 09:40:13 | 16 | |||||
|
Neurologychannel Resource Report Resource Website 1+ mentions |
Neurologychannel (RRID:SCR_001597) | data or information resource, topical portal, portal | A topical portal which provides information about conditions that affect the nervous system (brain, spinal cord, nerves, and muscles), such as stroke (brain attack), Alzheimer's disease, and back pain. It is a physician developed and monitored source of neurology information for consumers. Additionally, it contains comprehensive condition and treatment information, as well as interactive tools. | alzheimer's disease, back pain, brain, developed, disease, information, monitored, muscle, nerve, nervous system, neurology, physician, spinal cord, stroke | Alzheimer's Disease | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10380 | SCR_001597 | neurologychannel | 2026-07-28 09:40:19 | 1 | ||||||||
|
PhenoGen Informatics Resource Report Resource Website 10+ mentions |
PhenoGen Informatics (RRID:SCR_001613) | PhenoGen | service resource, data set, application programming interface, data or information resource, data repository, data analysis service, storage service resource, data access protocol, software resource, source code, production service resource, analysis service resource | Website for analyzing microarray data. Software toolbox for storing, analyzing and integrating microarray data and related genotype and phenotype data. The site is particularly suited for combining QTL and microarray data to search for candidate genes contributing to complex traits. In addition, the site allows, if desired by the investigators, sharing of the data. Investigators can conduct in-silico microarray experiments using their own and/or shared data. There are five major sections of the site: Genome/Transcriptome Data Browser, Microarray Analysis Tools, Gene List Analysis Tools, QTL Tools, and Downloads. The genome/transcriptome data browser combines a genome browser with all the microarray, RNA-Seq, and Genomic Sequencing data. This provides an effective platform to view all of this data side by side. Source code is available on GitHub. | genome, transcription, microarray, gene, quantitative trait loci, analysis, complex trait, genotype, phenotype, high-throughput, rna-seq, snp, genomic marker, region, data sharing, normalize, statistics, gene list, pathway, expression value, expression, correlation, exon, annotation, promoter, homolog, brain, heart, liver, adipose, candidate gene, genetics, transcriptome, eqtl, genome browser, inbred panel |
is related to: MONARCH Initiative has parent organization: University of Colorado Denver; Colorado; USA |
NIAAA R24 AA013162; NIAAA R01 AA13162; NIAAA U01 AA013524 |
PMID:17760997 | Free, Freely available | rid_000093, nlx_153879, r3d100011596 | https://github.com/TabakoffLab/PhenogenCloud, https://doi.org/10.17616/R3WS7F | http://phenogen.ucdenver.edu, http://phenogen.uchsc.edu | SCR_001613 | PhenoGen Informatics - The site for quantitative genetics of the transcriptome. | 2026-07-28 09:40:13 | 22 | |||
|
THOR Center for Neuroinformatics Resource Report Resource Website 1+ mentions |
THOR Center for Neuroinformatics (RRID:SCR_001400) | THOR Center | software application, data or information resource, software resource, topical portal, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022.Center hosting a number of related projects concerning neural networks, functional neuroimaging, multimedia signal processing, and biomedical signal processing. Neuroinformatics is a research field rooted in classical disciplines like signal processing, biology, physics, computer science and engineering. Neuroinformatics combines learning from the brain and learning about the brain. By studying information processing in the brain neuroinformatics invents new computing paradigms (e.g., artificial neural networks) with the objective of understanding the dynamics of the conscious mind. Artificial neural networks is an active neuroinformatics research field, which combines many approaches to adaptive signal processing in solving real world problems. They began using neural networks for general nonlinear adaptive signal processing. Since 1991 the CONNECT groups have participated in the development of neural computing as an advanced, non-linear statistical tool, which has been applied to forecasting within dynamical systems, pattern recognition, and medical image analysis, particularly functional neuroimages. While neural computing has largely been viewed as a black box approach, they have initiated research aimed at opening this black box, using hypertext, multimedia, and interactivity. Their key objective is to convert abstract models into intuitive knowledge through interactive visualization. | neuroinformatics, neural network, functional neuroimaging, multimedia, signal processing, biomedical, neuroscience, biomedical, brain |
has parent organization: Technical University of Denmark; Lyngby; Denmark is parent organization of: MRIWarp is parent organization of: Brede Toolbox is parent organization of: Lyngby |
Danish Research Council | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-08128 | SCR_001400 | Technology by Highly Oriented Research Center for Neuroinformatics | 2026-07-28 09:40:15 | 1 | ||||||
|
Brain Gene Expression Map Resource Report Resource Website 10+ mentions |
Brain Gene Expression Map (RRID:SCR_001517) | BGEM | data or information resource, expression atlas, database, atlas | This database contains gene expression patterns assembled from mouse nervous tissues at 4 time points throughout brain development including embryonic (e) day 11.5, e15.5, postnatal (p) day 7 and adult p42. Using a high throughput in situ hybridization approach we are assembling expression patterns from selected genes and presenting them in a searchable database. The database includes darkfield images obtained using radioactive probes, reference cresyl violet stained sections, the complete nucleotide sequence of the probes used to generate the data and all the information required to allow users to repeat and extend the analyses. The database is directly linked to Pubmed, LocusLink, Unigene and Gene Ontology Consortium housed at the National Center for Biotechnology Information (NCBI) in the National Library of Medicine. These data are provided freely to promote communication and cooperation among research groups throughout the world. | embryonic, expression pattern, gene expression, gene, adult, brain, brain development, in situ hybridization, mouse, nervous tissue, postnatal, molecular neuroanatomy resource, image | NINDS 5R37NS036558; NINDS N01-NS-0-2331 |
PMID:16602821 | nif-0000-09579 | SCR_001517 | BGEM - Brain Gene Expression Map, Mousebrain Gene Expression Map | 2026-07-28 09:40:12 | 10 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the nidm-terms Resources search. From here you can search through a compilation of resources used by nidm-terms and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that nidm-terms has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on nidm-terms then you can log in from here to get additional features in nidm-terms such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into nidm-terms you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
