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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Wave Surfer project Resource Report Resource Website |
Wave Surfer project (RRID:SCR_021476) | project portal, data or information resource, portal | Project related to neurophysiology data acquisition and analysis.Included open source software application for neurophysiology data acquisition and analysis is provided by Howard Hughes Medical Institute Janelia Research Campus scientists. Program is based in MatLab, and evolved from earlier open source software package called Ephus. | Neurophysiology data acquisition, neurophysiology data analysis, neurophysiology data, MATLAB, OpenBehavior |
is listed by: OpenBehavior is related to: Wave Surfer |
Free, Freely available | SCR_021476 | Wave Surfer | 2026-07-28 09:45:10 | 0 | |||||||||
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Automated Classification of Self-grooming in Mice project Resource Report Resource Website 1+ mentions |
Automated Classification of Self-grooming in Mice project (RRID:SCR_021597) | project portal, data or information resource, portal | Portal provides protocol that implements JAABA, open source machine learning based behavior detection system; motr, open-source mouse trajectory tracking software; and bonsai, open source system capable of streaming and recording video. Together they use these tools to process videos of mice performing grooming behaviors in variety of behavioral setups. | grooming behavior, behavior detection protocol, JAABA behavior detection system, motr mouse trajectory tracking software, bonsai streaming and recording video, OpenBehavior | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2017.05.026 | Free, Freely available | SCR_021597 | Automated Classification of Self-grooming in Mice | 2026-07-28 09:45:27 | 1 | ||||||||
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Calcium Imaging data Analysis project Resource Report Resource Website 1+ mentions |
Calcium Imaging data Analysis project (RRID:SCR_021477) | CaImAn | project portal, data or information resource, portal | Project related to calcium imaging.Provides software library, CaImAn, for one and two-photon Calcium Imaging data Analysis. | calcium imaging analysis, movie handling, motion correction, source extraction, spike deconvolution, result visualization, OpenBehavior |
is listed by: OpenBehavior is related to: Calcium Imaging data Analysis |
DOI:10.7554/elife.38173 | Free, Freely available | SCR_021477 | Calcium Imaging data Analysis | 2026-07-28 09:45:14 | 1 | |||||||
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BonVision project Resource Report Resource Website |
BonVision project (RRID:SCR_021491) | project portal, data or information resource, portal | Project related to creating and controlling visual environments.Provided open source software package for creating and controlling visual environments was developed by University College London scientists. | Creating visual environments, controlling visual environments, Bonsai, 2D environment, 3D environments, OpenBehavior |
is listed by: OpenBehavior is related to: BonVision has parent organization: University College London; London; United Kingdom |
DOI:10.1101/2020.03.09.983775 | Free, Freely available | SCR_021491 | BonVision | 2026-07-28 09:45:10 | 0 | ||||||||
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Open Source Whisking Video Database portal Resource Report Resource Website |
Open Source Whisking Video Database portal (RRID:SCR_021404) | project portal, data or information resource, portal | Portal provides shared database of videos featuring juvenile and adult male rats and adult male mice exploring stationary objects.This dataset includes wide variety of experimental conditions including genetic, pharmacological, and sensory deprivation interventions to explore how active sensing behavior is modulated by different factors. Database of high speed videos of whisking behavior in freely moving rodents.Open source high speed infrared videography database to study principles of active sensing in freely navigating rodents. | High speed videos, whisking behavior, freely moving rodents, infrared videography database, active sensing, OpenBehavior |
is listed by: OpenBehavior is related to: Open Source Whisking Video Database |
DOI:10.1093/gigascience/giy134 | Free, Freely available | SCR_021404 | 2026-07-28 09:45:12 | 0 | |||||||||
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NC4gate Resource Report Resource Website |
NC4gate (RRID:SCR_026445) | source code, software resource | Code for testing and operating NC4gate modules of modular gate system for autonomous control of rodent behavior. Fully customizable gate system that can be used in behavioral experiments involving rodent mazes (T-maze, Y-maze, radial arm, etc.). | OpenBehavior, modular gate system, autonomous control of rodent behavior, behavioral experiments, rodent mazes, | is listed by: OpenBehavior | DOI:10.1101/2024.11.22.624912 | Free, Available for download, Freely available | https://osf.io/uy7ez/, https://edspace.american.edu/openbehavior/project/nc4gate/ | SCR_026445 | 2026-07-28 09:46:39 | 0 | ||||||||
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ArUco Resource Report Resource Website 10+ mentions |
ArUco (RRID:SCR_026572) | instrument resource, source code, software resource | Automated rodent behavioral scoring system, complete with 3D design files and code/software. System monitors behavioral engagement using open-source software. 3D design files and necessary software has been made available, as well as code that can be used for data analysis. | OpenBehavior, Aruco marker based tracking, pose estimation, rodent behavioral session, | is listed by: OpenBehavior | NINDS R01NS110823; United States (US) Department of Veterans Affairs Rehabilitation Research and Development Service ; University of Texas at Dallas |
DOI:10.1523/ENEURO.0500-23.2024 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/aruco-markers/ | SCR_026572 | Augmented Reality University of Cordoba, Aruco | 2026-07-28 09:46:42 | 14 | ||||||
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STPoseNet Resource Report Resource Website |
STPoseNet (RRID:SCR_026834) | source code, software resource | Source code for pose recognition model for laboratory mice based on yolov8. Real-time spatiotemporal network model for robust mouse pose estimation. | OpenBehavior, spatiotemporal network model, mouse pose estimation, | is listed by: OpenBehavior | National Natural Science Foundation of China | PMID:38711440 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/stposenet/ | SCR_026834 | 2026-07-28 09:46:49 | 0 | |||||||
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Active Commutator Resource Report Resource Website |
Active Commutator (RRID:SCR_027098) | instrument resource, source code, software resource | Open source active commutator for Open Ephys / Intan electrophysiology systems. Motorized device used in neuroscience research, particularly in studies involving freely moving animals, to manage wires or fibers connecting headstage or other device to external equipment. Addresses common issue of tether tangling during experiments with freely moving subjects. Relies on Hall-Effect sensor detecting rotation of cable, this information is continuously fed to Adafruit microcontroller that operates servo motor to counter-rotate cable as needed, preventing twisting and ensuring clear, uninterrupted data collection. System can also be paused, restarted, and its neutral position recalibrated with simple button presses, allowing for flexible operation. | OpenBehavior, device, commutator, neuroscience, electrophysiology system, freely moving subjects, flexible operation, | is listed by: OpenBehavior | Free, Available for download, Freely available | SCR_027098 | 2026-07-28 09:46:59 | 0 | ||||||||||
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PyBehave Resource Report Resource Website |
PyBehave (RRID:SCR_025406) | software application, source code, software resource | Open source software interface and framework for controlling behavioral experiments in neuroscience and psychology. Python-based framework for designing and controlling behavioral experiments in animals. Used to develop, perform, and control behavioral tasks. | OpenBehavior, controlling behavioral experiments, neuroscience and psychology experiments, control behavioral tasks, behavioral experiments in animals, | is listed by: OpenBehavior | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/pybehave/ | SCR_025406 | 2026-07-28 09:46:22 | 0 | |||||||||
|
ghostipy Resource Report Resource Website |
ghostipy (RRID:SCR_026231) | software application, data analysis software, source code, data processing software, software resource, time-series analysis software, 1d time-series analysis software | Software signal processing and spectral analysis toolbox designed for local field potential recordings. | OpenBehavior, neuroscience, signal processing, spectral analysis, local field potential recordings, | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0202-21.2021 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/ghostipy/ | SCR_026231 | 2026-07-28 09:46:35 | 0 | ||||||||
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SaLSa Resource Report Resource Website |
SaLSa (RRID:SCR_026182) | source code, software toolkit, software resource | Software MATLAB package for analyzing and categorizing behaviors using pose estimation data. Integrates semi-automatic labeling with machine learning, specifically Long Short-Term Memory neural networks, to classify behavioral "syllables” (distinct, repeatable behaviors). Combinatory approach of semi-automatic labeling and long short-term memory to classify behavioral syllables. | OpenBehavior, semi-automatic labeling, long short-term memory, classify behavioral syllables, behavior, pose estimation data, | is listed by: OpenBehavior | PMID:37989587 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/salsa/ | SCR_026182 | 2026-07-28 09:46:34 | 0 | ||||||||
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tmilltracker Resource Report Resource Website |
tmilltracker (RRID:SCR_023511) | software resource | Open source computer vision controlled treadmill system for small running animals such as insects and mice. Treadmill is controlled by Python software, allowing for flexible control of video tracking parameters, behavioral triggers, distance ran, and feedback. Used for studying locomotor behavior. | OpenBehavior, treadmill system, running animals, locomotor behavior, video tracking parameters, behavioral triggers, distance ran, | is listed by: OpenBehavior | Royal Society Research ; Nuffield Foundation Science Bursary Programme ; BBSRC Research Experience Placement |
DOI:10.1016/j.jneumeth.2013.03.009 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/tmilltracker/ | SCR_023511 | 2026-07-25 12:10:31 | 0 | |||||||
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Automated 2 Photon Imaging Compatible Platform for Assessing Working Memory Resource Report Resource Website |
Automated 2 Photon Imaging Compatible Platform for Assessing Working Memory (RRID:SCR_023463) | instrument resource | Open source automated platform for assessing working memory and prefrontal circuit function. Designed for automated, high-throughput assessments of working memory and simultaneous two-photon imaging in chronic stress studies. Physiology compatible behavioral platform designed specifically for studying circuit mechanisms underlying working memory and related cognitive functions in chronic stress states. | OpenBehavior, instrument, assessing working memory, prefrontal circuit function, chronic stress, behavioral platform, | is listed by: OpenBehavior | DOI:10.1016/j.ynstr.2023.100518 | SCR_023463 | Automated 2-Photon Imaging-Compatible Platform for Assessing Working Memory | 2026-07-25 12:10:29 | 0 | |||||||||
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3D Printed Multi Pump System Resource Report Resource Website |
3D Printed Multi Pump System (RRID:SCR_023575) | instrument resource | System includes 3D Printed Syringe Pump Rack composed by 5 Syringe Pumps to have 2 continuous flow systems and one remaining pump. Syringe Pump is used to gradually administer small amounts of fluid to patient or for use in chemical and biomedical research. Main features include Open hardware/software, Extremely compact size ( 7cm movement range ), High precision lead screw and nut, Simple to use (command line interface), Simple to replicate, Minimal clean Design. | 3D Printed Syringe Pump Rack, Syringe Pumps, continuous flow system, OpenBehavior | is listed by: OpenBehavior | Freely available, Available for download, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_023575.pdf | https://edspace.american.edu/openbehavior/project/3d-printed-multi-pump-system/ | SCR_023575 | 3D Printed Syringe Pump Rack | 2026-07-25 12:10:30 | 0 | |||||||
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RatHeadphones Resource Report Resource Website |
RatHeadphones (RRID:SCR_023667) | software resource | Repository for highly controlled sound presentation in freely moving rats. Provides all necessary information for building, adjusting, and using Ratphones to reliably present auditory stimulation to freely moving rats. Used for 3D printing of headphones designed for auditory psychophysics in behaving rats. | OpenBehavior, instrument, highly controlled sound presentation, freely moving rats, auditory stimulation, 3D headphones printing, auditory psychophysics, behaving rats, | is listed by: OpenBehavior | Champalimaud Foundation ; Marie Curie Career Integration Grant ; Human Frontier Science Program ; EU FP7 Grant |
DOI:10.1523/ENEURO.0028-23.2023 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/ratphones/ | SCR_023667 | Ratphones | 2026-07-25 12:10:31 | 0 | ||||||
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Low Cost Open Source Eye Tracking Resource Report Resource Website |
Low Cost Open Source Eye Tracking (RRID:SCR_021497) | software resource | Software tool as part of system designed to be easy to build and setup for real time eye tracking.Open source software provides accurate eye tracking. Can identify shapes such as circles, lines, and triangles.You can rotate and mirror images and also use variety of filters.Capable of processing video in real-time for optical flow. App for viewing multiple video streams from USB cameras. | Real time eye tracking, identify shapes, identify circles, identify lines, identify triangles, fixed point laser beacons, camera, processing video in real time, OpenBehavior |
is listed by: OpenBehavior is related to: Low Cost Open Source Eye Tracking project |
Free, Freely available | https://edspace.american.edu/openbehavior/project/low-cost-eye-tracking/ | SCR_021497 | CameraMultiViewer | 2026-07-25 12:09:47 | 0 | ||||||||
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openEyeTrack Resource Report Resource Website 1+ mentions |
openEyeTrack (RRID:SCR_021401) | software resource | Open source software tool used as part of multithreaded eye tracker.Video based eye tracker. | Multithreaded eye tracker, tracking eye position system, head fixed application, OpenBehavior |
is listed by: OpenBehavior is related to: openEyeTrack project |
DOI:10.21105/joss.01631 | Free, Freely available | https://edspace.american.edu/openbehavior/project/openeyetrack/ | SCR_021401 | 2026-07-25 12:09:46 | 1 | ||||||||
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NINscope software Resource Report Resource Website |
NINscope software (RRID:SCR_021583) | software resource | Sofware tool for use with NINscope. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: NINscope |
DOI:10.7554/elife.49987 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/ninscope/ | SCR_021583 | 2026-07-25 12:09:48 | 0 | ||||||||
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OpenMV Resource Report Resource Website |
OpenMV (RRID:SCR_021615) | software resource | Software tool as part of OpenMV system. | OpenMV system, OpenBehavior |
is listed by: OpenBehavior is related to: OpenMV project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/openmv/ | SCR_021615 | 2026-07-25 12:09:48 | 0 |
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