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URL: https://cumulus.readthedocs.io/en/stable
Proper Citation: Cumulus (RRID:SCR_021644)
Description: Software tool as cloud based single cell genomics and spatial transcriptomics data analysis framework that is scalable to massive amounts of data and able to process variety of data types. Consists of cloud analysis workflow, Python analysis package and visualization application. Supports analysis of single-cell RNA-seq, CITE-seq, Perturb-seq, single-cell ATAC-seq, single-cell immune repertoire and spatial transcriptomics data.
Resource Type: data analysis software, data processing software, software application, software resource
Defining Citation: DOI:10.1038/s41592-020-0905-x
Keywords: Single cell genomics, spatial transcriptomics, single-cell RNA-seq, CITE-seq, Perturb-seq, single-cell ATAC-seq, single-cell immune repertoire, data
Funding: Frederick National Laboratory for Cancer Research ; HHMI ; Klarman Cell Observatory ; Leidos Biomedical Research ; Ludwig Center at MIT ; Manton Foundation ; NCI
Availability: Free, Available for download, Freely available
Resource Name: Cumulus
Resource ID: SCR_021644
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
