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Koch Institute at MIT Data Science and Multimodal Integration Core Facility (RRID:SCR_017894)Copy Citation Copied
URL: https://ki-sbc.mit.edu/dsmi
Proper Citation: Koch Institute at MIT Data Science and Multimodal Integration Core Facility (RRID:SCR_017894)
Description: Core provides central hub to help leverage bioinformatics and data science methods in research projects. Services include Transcriptomics: bulk RNA-Seq, single-cell RNA-Seq, and spatial RNA-Seq; Genomics: SNP, structural variants (SV), and copy number variation (CNV) analyses; Regulatory genomics: ChIP-Seq, ATAC-Seq, CUT&RUN, and Hi-C; Functional genomics: CRISPR-based loss-of-function screens;Image and metadata analysis: AI/ML-based approaches including knowledge graphs. Offers training, education, collaboration, consultation,custom guidance on study design and analysis approaches. Provides classroom and custom training sessions on computational, data science, bioinformatics topics, tailored workshops for requested specialized topics. Offers technical infrastructure and support, computing resource optimization and facilitation, bioinformatics software deployment (conda environments and Docker containers), version control and reproducible science (Git repositories), data management support and submission to public repositories.
Synonyms: Barbara K. Ostrom Bioinformatics Facility, Data Science & Multimodal Integration Core (DSMI), The Barbara K. Ostrom (1978) Bioinformatics and Computing Facility, Bioinformatics and Computing Core
Resource Type: access service resource, core facility, service resource
Keywords: Data Science, Bioinformatics, support, training, data, analysis, storage, service, core, ABRF, USEDit
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