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URL: http://www.bioinfo.tsinghua.edu.cn/dbsubloc.html
Proper Citation: DBSubLoc - Database of protein Subcellular Localization (RRID:SCR_002339)
Description: A database of protein subcellular localization containing proteins from primary protein database SWISS-PROT and PIR. By collecting the subcellular localization annotation, these information are classified and categorized by cross references to taxonomies and Gene Ontology database. Annotations were taken from primary protein databases, model organism genome projects and literature texts, and then were analyzed to dig out the subcellular localization features of the proteins. The proteins are also classified into different categories. Based on sequence alignment, nonredundant subsets of the database have been built, which may provide useful information for subcellular localization prediction. The database now contains >60 000 protein sequences including 30 000 protein sequences in the nonredundant data sets. Online download, SOAP server, Blast tools and prediction services are also available.
Abbreviations: DbSubLoc
Resource Type: analysis service resource, data access protocol, data analysis service, data or information resource, database, production service resource, service resource, software resource, web service
Defining Citation: PMID:14681374
Keywords: protein, protein database, protein subcellular localization, blast, prediction, subcellular
Funding: National Key Foundational Research of China 863-2002AA23/03/; National Key Foundational Research of China 2002AA234041; National Key Foundational Research of China 973-2003CB715900; National Key Foundational Research of China NSF-90303017
Resource Name: DBSubLoc - Database of protein Subcellular Localization
Resource ID: SCR_002339
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
