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Novel frem1-related mouse phenotypes and evidence of genetic interactions with gata4 and slit3.

Tyler F Beck | Oleg A Shchelochkov | Zhiyin Yu | Bum Jun Kim | Andrés Hernández-García | Hitisha P Zaveri | Colin Bishop | Paul A Overbeek | David W Stockton | Monica J Justice | Daryl A Scott
PloS one | 2013

The FRAS1-related extracellular matrix 1 (FREM1) gene encodes an extracellular matrix protein that plays a critical role in the development of multiple organ systems. In humans, recessive mutations in FREM1 cause eye defects, congenital diaphragmatic hernia, renal anomalies and anorectal malformations including anteriorly placed anus. A similar constellation of findings-microphthalmia, cryptophthalmos, congenital diaphragmatic hernia, renal agenesis and rectal prolapse-have been described in FREM1-deficient mice. In this paper, we identify a homozygous Frem1 missense mutation (c.1687A>T, p.Ile563Phe) in an N-ethyl-N-nitrosourea (ENU)-derived mouse strain, crf11, with microphthalmia, cryptophthalmos, renal agenesis and rectal prolapse. This mutation affects a highly conserved residue in FREM1's third CSPG domain. The p.Ile563Phe change is predicted to be deleterious and to cause decreased FREM1 protein stability. The crf11 allele also fails to complement the previously described eyes2 allele of Frem1 (p.Lys826*) providing further evidence that the crf11 phenotype is due to changes affecting Frem1 function. We then use mice bearing the crf11 and eyes2 alleles to identify lung lobulation defects and decreased anogenital distance in males as novel phenotypes associated with FREM1 deficiency in mice. Due to phenotypic overlaps between FREM1-deficient mice and mice that are deficient for the retinoic acid-responsive transcription factor GATA4 and the extracellular matrix protein SLIT3, we also perform experiments to look for in vivo genetic interactions between the genes that encode these proteins. These experiments reveal that Frem1 interacts genetically with Gata4 in the development of lung lobulation defects and with Slit3 in the development of renal agenesis. These results demonstrate that FREM1-deficient mice faithfully recapitulate many of the phenotypes seen in individuals with FREM1 deficiency and that variations in GATA4 and SLIT3 expression modulate some FREM1-related phenotypes in mice.

Pubmed ID: 23536828

Associated grants

  • Agency: NICHD NIH HHS, United States
    Id: R01 HD064667
  • Agency: NICHD NIH HHS, United States
    Id: R01HD064667
  • Agency: NICHD NIH HHS, United States
    Id: 5P30 HD024064
  • Agency: NICHD NIH HHS, United States
    Id: P30 HD024064
  • Agency: NICHD NIH HHS, United States
    Id: U01HD39372
  • Agency: NICHD NIH HHS, United States
    Id: U01 HD039372
  • Agency: NIGMS NIH HHS, United States
    Id: T32 GM008307
  • Agency: NEI NIH HHS, United States
    Id: R03 EY014854
  • Agency: NEI NIH HHS, United States
    Id: R03EY014854

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PANTHER Evolutionary analysis of coding SNPs (tool)

RRID:SCR_005145

Data analysis service that estimates the likelihood of a particular nonsynonymous (amino-acid changing) coding SNP to cause a functional impact on the protein. To analyze many SNPs, download the PANTHER Coding Snp Analysis tool from the downloads page.

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SIFT (tool)

RRID:SCR_012813

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Sequencher (tool)

RRID:SCR_001528

Software for Next-Generation DNA sequencing, Sanger DNA analysis, and RNA sequencing. It contains sequence analysis tools which include reference-guided alignments, de novo assembly, variant calling, and SNP analyses. It has integrated the Cufflinks suite for in-depth transcript analysis and differential gene expression of RNA-Seq data.

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National Institutes of Health (tool)

RRID:SCR_011417

NIH is the nations medical research agency - making important medical discoveries that improve health and save lives. The National Institutes of Health (NIH), a part of the U.S. Department of Health and Human Services, is the primary Federal agency for conducting and supporting medical research. Helping to lead the way toward important medical discoveries that improve peoples health and save lives, NIH scientists investigate ways to prevent disease as well as the causes, treatments, and even cures for common and rare diseases. NIH research impacts: * child and teen health, * men's health, * minority health, * seniors' health, * women's health, and * wellness and lifestyle issues. Composed of 27 Institutes and Centers, the NIH provides leadership and financial support to researchers in every state and throughout the world.

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129S6/SvEvTac (tool)

RRID:MGI:3044417

laboratory mouse with name 129S6/SvEvTac from MGI.

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Mus musculus with name C57BL/6J from IMSR.

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C57BL/6J (tool)

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Frem1crf11/Frem1crf11 (tool)

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Allele Detail: Chemically induced (ENU) This is a legacy resource.

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