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Integrated Animals is a virtual database currently indexing available animal strains and mutants from: AGSC (Ambystoma), BCBC (mice), BDSC (flies), European Xenopus Resource Center (frog), The National Xenopus Resource (frog), Xenopus Express (frog), CWRU Cystic Fibrosis Mouse Models (mice), DGGR (flies), FlyBase (flies), IMSR (mice), MGI (mice), MMRRC (mice), NSRRC (pig), RGD (rats), Sperm Stem Cell Libraries for Biological Research (rats), Tetrahymena Stock Center (Tetrahymena), WormBase (worms), XGSC (Xiphophorus), ZFIN (zebrafish), and ZIRC (zebrafish). Note, the IMSR data is linked, but users may need to re-execute the search if the top mouse is not returned properly.
Note: BCBC is no longer in service, so the links may not be functional.
| Organism Name | Proper Citation | Species | Synonyms |
Notes |
Phenotype | Affected Gene | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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PD126 Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00030552 | Caenorhabditis elegans | unc-54(e190) I; ccIs126. | ccIs126 [myo-2p::lacZ + unc-54(+)]. lacZ expression in pharyngeal and body wall muscles. Superficially wild-type, but gives some paralyzed animals. | WBGene00006789(unc-54) | WBGene00006789(unc-54) | WB-STRAIN:WBStrain00030552 | WormBase (WB) | WB | available | PMID:8244003 | WB-STRAIN:PD126, CGC_PD126 | 2026-09-05 04:52:23 | 0 | ||
|
PD2218 Resource Report Resource Website 1+ mentions |
RRID:WB-STRAIN:WBStrain00030557 | Caenorhabditis elegans | ccTi1594 umnIs7 III. | ccTi1594 [mex-5p::GFP::gpr-1::smu-1 3'UTR + Cbr-unc-119(+), III: 680195] III. umnIs7 [myo-2p::GFP + NeoR, III:9421936] III. GFP expression in germline and GFP expression in pharynx. High penetrance of non-Mendelian inheritance. Neomycin resistant. The GPR-1 overexpression transgene consistently confers a high penetrance of non-Mendelian inheritance; fluorescent markers allow tracking of Mendelian and non-Mendelian events. The genomic location of ccTi1594 is with respect to the WEBcel235 assembly.|"Supplementary_genotype ccTi1594 [mex-5p::GFP::gpr-1::smu-1 3'UTR + Cbr-unc-119(+), III: 680195] III. umnIs7 [myo-2p::GFP + NeoR, III:9421936] III" | WB-STRAIN:WBStrain00030557 | WormBase (WB) | WB | available | PMID:37878696 | WB-STRAIN:PD2218, CGC_PD2218 | 2026-09-05 04:52:23 | 1 | ||||
|
PD2220 Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00030558 | Caenorhabditis elegans | ccTi1594 umnIs27 III. | ccTi1594 [mex-5p::GFP::gpr-1::smu-1 3'UTR + Cbr-unc-119(+), III: 680195] III. umnIs27 [myo-2::GFP + NeoR, III: 8856215 (intergenic)] III. GFP expression in germline and GFP expression in pharynx. High penetrance of non-Mendelian inheritance. Neomycin resistant. The GPR-1 overexpression transgene consistently confers a high penetrance of non-Mendelian inheritance; fluorescent markers allow tracking of Mendelian and non-Mendelian events. The genomic location of ccTi1594 is with respect to the WEBcel235 assembly. | WB-STRAIN:WBStrain00030558 | WormBase (WB) | WB | available | PMID:39300074 | WB-STRAIN:PD2220, CGC_PD2220 | 2026-09-05 04:52:23 | 0 | ||||
|
PD1594 Resource Report Resource Website 1+ mentions |
RRID:WB-STRAIN:WBStrain00030555 | Caenorhabditis elegans | ccTi1594 unc-119(ed3) III. | ccTi1594 [mex-5p::GFP::gpr-1::smu-1 3'UTR + Cbr-unc-119(+), III: 680195] III. GFP expression in germline. Transgene rescues unc-119(ed3). Improved GPR-1 over-expression transgene appears to be stably expressed in the germline at a wide range of temperatures and does not require special handling. (unlike other GPR-1 overexpressing transgenes previously described in the literature). The GPR-1 overexpression transgene consistently confers a high penetrance of non-Mendelian inheritance. Neomycin resistant. The genomic location of ccTi1594 is with respect to the WEBcel235 assembly.|"Made_by: Christian Froekjaer Jensen" | WBGene00006843(unc-119) | WBGene00006843(unc-119) | WB-STRAIN:WBStrain00030555 | WormBase (WB) | WB | available | WB-STRAIN:PD1594, CGC_PD1594 | 2026-09-05 04:52:23 | 1 | |||
|
PD2217 Resource Report Resource Website 1+ mentions |
RRID:WB-STRAIN:WBStrain00030556 | Caenorhabditis elegans | ccTi1594 unc-119(ed3) III; hjSi20 IV. | ccTi1594 [mex-5p::GFP::gpr-1::smu-1 3'UTR + Cbr-unc-119(+), III: 680195] III. hjSi20 [myo-2p::mCherry::unc-54 3'UTR] IV. GFP expression in germline. mCherry expression in pharynx. The ccTi1594 transgene rescues unc-119(ed3). High penetrance of non-Mendelian inheritance. The GPR-1 overexpression transgene consistently confers a high penetrance of non-Mendelian inheritance; fluorescent markers allow tracking of Mendelian and non-Mendelian events. The genomic location of ccTi1594 is with respect to the WEBcel235 assembly. | WBGene00006843(unc-119) | WBGene00006843(unc-119) | WB-STRAIN:WBStrain00030556 | WormBase (WB) | WB | available | PMID:38946472 | WB-STRAIN:PD2217, CGC_PD2217 | 2026-09-05 04:52:23 | 2 | ||
|
PD1074 Resource Report Resource Website 10+ mentions |
RRID:WB-STRAIN:WBStrain00030553 | Caenorhabditis elegans | EMPTY | A defined and recently cloned population of animals derived from the original Bristol variant of C. elegans originally obtained by Brenner from E. Dougherty with no known history of mutagenesis. Brenners original population, called N2, was used as the basis for the vast majority of laboratory strains in use currently. No early frozen stock of the unmutagenized N2 population currently exists, but later stocks were available from several laboratories. PD1074 is a clonal population founded by picking a single worm of one such stock, VC3510. VC3510 in turn derives from a subpopulation of N2 described in the literature as VC2010. PD1074 is intended to be used as a wild type reference strain with the closely matched genome assembly of Yoshimura et al (ref) available on Wormbase as VC2010-1.0. (ENA study accession PRJEB28388; assembly accession GCA_900538205). We note that PD1074 is expected to be largely similar to most lab N2 strains, but that as a clonal isolate derived from N2, there will be some loci that will vary compared to any other particular N2 isolate. One such example is a partial deletion of the alh-2 locus in PD1074. Additional loci that were found to vary between the prior N2 reference genome (WormBase release WS264) and the VC2010-1.0 assembly are detailed in supplemental table 8 in Yoshimura et al (ref).|"A defined and recently cloned population of animals derived from the original Bristol variant of C. elegans originally obtained by Brenner from E. Dougherty with no known history of mutagenesis. Brenners original population, called N2, was used as the basis for the vast majority of laboratory strains in use currently. No early frozen stock of the unmutagenized N2 population currently exists, but later stocks were available from several laboratories. PD1074 is a clonal population founded by picking a single worm of one such stock, VC3510. VC3510 in turn derives from a subpopulation of N2 described in the literature as VC2010. PD1074 is intended to be used as a wild type reference strain with the closely matched genome assembly of Yoshimura, et al. (Genome Res. 2019 Jun;29(6):1009-1022) available on Wormbase as VC2010-1.0. (ENA study accession PRJEB28388; assembly accession GCA_900538205). We note that PD1074 is expected to be largely similar to most lab N2 strains, but that as a clonal isolate derived from N2, there will be some loci that will vary compared to any other particular N2 isolate. One such example is a partial deletion of the alh-2 locus in PD1074. Additional loci that were found to vary between the prior N2 reference genome (WormBase release WS264) and the VC2010-1.0 assembly are detailed in supplemental table 8 in Yoshimura, et al, (2019)."|"Added Wild_Isolate tag as genotype info suggesting that they were sampled from the wild."|"Made_by: Karen Artiles & Mark Edgley"|"no longer available from the CGC."|"Supplementary_genotype"|"WBStrain provided so WBPaper00061243 paper added based on AFP_Strain data."|"WBStrain provided so WBPaper00061573 paper added based on AFP_Strain data." | WB-STRAIN:WBStrain00030553 | WormBase (WB) | WB | unknown | PMID:33313486 PMID:33458604 PMID:33693840 PMID:34156835 PMID:37008729 PMID:36595469 PMID:37170380 PMID:37590248 PMID:37777524 PMID:38596360 PMID:38488606 PMID:38771761 PMID:39712935 |
WB-STRAIN:PD1074 | 2026-09-05 04:52:23 | 11 | ||||
|
PD2860 Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00030562 | Caenorhabditis elegans | pelo-1(cc2849) III; skih-2(cc2854) IV. | Made_by: Joshua Arribere|"Temperature-sensitive. Weakly fertile at 16C; sterile at 23C. Incomplete de-repression of nonstop mRNAs. Reference: Arribere, JA and Fire, AZ. Nonsense-mediated decay triggers SKI/pelota-dependent decay in a metazoan." | WBGene00008502(skih-2)|WBGene00011280(pelo-1) | WBGene00008502(skih-2), WBGene00011280(pelo-1) | WB-STRAIN:WBStrain00030562 | WormBase (WB) | WB | available | WB-STRAIN:PD2860, CGC_PD2860 | 2026-09-05 04:52:23 | 0 | |||
|
PD2859 Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00030561 | Caenorhabditis elegans | unc-54(cc2859[unc-54::GFP::TAA::NSUTR]) I. | Endogenous unc-54::GFP made by CRISPR. Exhibits green thick muscle filaments in the body wall muscle. Weakly Unc. Reference: Arribere JA, Cenik ES, Jain N, Hess GT, Lee CH, Bassik MC, Fire AZ. Translation readthrough mitigation. Nature. 2016 Jun 30;534(7609):719-23. Epub 2016 Jun 1.|"Made_by: Joshua Arribere" | WBGene00006789(unc-54) | WBGene00006789(unc-54) | WB-STRAIN:WBStrain00030561 | WormBase (WB) | WB | available | WB-STRAIN:PD2859, CGC_PD2859 | 2026-09-05 04:52:23 | 0 | |||
|
PD3852 Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00030568 | Caenorhabditis elegans | EMPTY | EMPTY | WBGene00004010(pha-1)|WBGene00006789(unc-54) | WBGene00004010(pha-1), WBGene00006789(unc-54) | WB-STRAIN:WBStrain00030568 | WormBase (WB) | WB | unknown | WB-STRAIN:PD3852 | 2026-09-05 04:52:23 | 0 | |||
|
PD3330 Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00030566 | Caenorhabditis elegans | rrf-3(pk1426);him-8(e1489) | EMPTY | WB-STRAIN:WBStrain00030566 | WormBase (WB) | WB | unknown | PMID:21177965 | WB-STRAIN:PD3330 | 2026-09-05 04:52:23 | 0 | ||||
|
PD7227 Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00030600 | Caenorhabditis elegans | let-856(cc514) unc-4(e120)/mnC1 [dpy-10(e128) unc-52(e444)] II. | Heterozygotes are WT and segregate WT, paralyzed Dpys and Unc-4s which arrest as larval lethals. | WBGene00001072(dpy-10)|WBGene00002955(let-856)|WBGene00006744(unc-4)|WBGene00006787(unc-52) | WBGene00001072(dpy-10), WBGene00002955(let-856), WBGene00006744(unc-4), WBGene00006787(unc-52) | WB-STRAIN:WBStrain00030600 | WormBase (WB) | WB | available | PMID:9136012 | WB-STRAIN:PD7227, CGC_PD7227 | 2026-09-05 04:52:23 | 0 | ||
|
OU100 Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00030530 | Caenorhabditis elegans | prkl-1(zy11) IV. | Reference: Sanchez-Alvarez L, et al. PLoS Genet. 2011 Sep;7(9):e1002257. | WBGene00022727(prkl-1) | WBGene00022727(prkl-1) | WB-STRAIN:WBStrain00030530 | WormBase (WB) | WB | available | WB-STRAIN:OU100, CGC_OU100 | 2026-09-05 04:52:23 | 0 | |||
|
OW715 Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00030538 | Caenorhabditis elegans | tdo-2(zg216) III. | Crispr/Cas9 engineered deletion mutant removes 28 basepairs in tdo-2 coding region. Reference: Michels H, et al. Sci Rep. 2016 Dec 20;6:39199.|"Made_by: H. Michels" | WBGene00016201(tdo-2) | WBGene00016201(tdo-2) | WB-STRAIN:WBStrain00030538 | WormBase (WB) | WB | available | WB-STRAIN:OW715, CGC_OW715 | 2026-09-05 04:52:23 | 0 | |||
|
OW454 Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00030535 | Caenorhabditis elegans | kynu-1(tm4924) X. | C15H9.7. Homozygous viable. Reference: van der Goot AT, et al. Proc. Natl. Acad. Sci. U.S.A. 2012 109(37) 14912-7.|"Made_by: A. van der Goot" | WBGene00015802(kynu-1) | WBGene00015802(kynu-1) | WB-STRAIN:WBStrain00030535 | WormBase (WB) | WB | available | WB-STRAIN:OW454, CGC_OW454 | 2026-09-05 04:52:23 | 0 | |||
|
OW477 Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00030536 | Caenorhabditis elegans | afmd-1(tm4547) IV. | D2024.2. Homozygous viable. Reference: van der Goot AT, et al. Proc. Natl. Acad. Sci. U.S.A. 2012 109(37) 14912-7.|"Made_by: R. Seinstra" | WBGene00017051(afmd-1) | WBGene00017051(afmd-1) | WB-STRAIN:WBStrain00030536 | WormBase (WB) | WB | available | WB-STRAIN:OW477, CGC_OW477 | 2026-09-05 04:52:23 | 0 | |||
|
OW15 Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00030533 | Caenorhabditis elegans | grk-2(gk268) III; pkIs2386 IV. | pkIs2386 [unc-54p::alpha-synnuclein::YFP + unc-119(+)]. | WBGene00001709(grk-2) | WBGene00001709(grk-2) | WB-STRAIN:WBStrain00030533 | WormBase (WB) | WB | available | WB-STRAIN:OW15, CGC_OW15 | 2026-09-05 04:52:23 | 0 | |||
|
OU247 Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00030531 | Caenorhabditis elegans | zyIs1. | zyIs1 [lin-11::RFP + rol-6(su1006)]. Roller. Reference: Sanchez-Alvarez L, et al. PLoS Genet. 2011 Sep;7(9):e1002257. | WB-STRAIN:WBStrain00030531 | WormBase (WB) | WB | available | WB-STRAIN:OU247, CGC_OU247 | 2026-09-05 04:52:23 | 0 | |||||
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OW716 Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00030539 | Caenorhabditis elegans | tdo-2(zg217) III. | Crispr/Cas9 engineered deletion mutant removes 14 basepairs in tdo-2 coding region. Reference: Michels H, et al. Sci Rep. 2016 Dec 20;6:39199.|"Made_by: H. Michels" | WBGene00016201(tdo-2) | WBGene00016201(tdo-2) | WB-STRAIN:WBStrain00030539 | WormBase (WB) | WB | available | WB-STRAIN:OW716, CGC_OW716 | 2026-09-05 04:52:23 | 0 | |||
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OW1002 Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00030541 | Caenorhabditis elegans | lir-3(tm813) II. | Homozygous viable. Reference: Sin O, et al. Mol Cell. 2017 Mar 16;65(6):1096-1108.|"Made_by: O. Sin" | WBGene00003046(lir-3) | WBGene00003046(lir-3) | WB-STRAIN:WBStrain00030541 | WormBase (WB) | WB | available | WB-STRAIN:OW1002, CGC_OW1002 | 2026-09-05 04:52:23 | 0 | |||
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PC73 Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00030549 | Caenorhabditis elegans | ubIs6. | ubIs6 [hsp16.1::hsp-16A::lacZ + rol-6(su1006)]. Transgene contains a translational fusion to lacZ in which a Sau 3A fragment containing the intergenic region of a hsp16-48 and hsp16-1 gene pair of locus hsp16A was fused in-frame to lacZ to the Sau 3A site in exon of hsp16-1. The contruct contains the SV40 nuclear localization signal fused to the beginning of the lacZ coding region. Published as ubIn6. | WB-STRAIN:WBStrain00030549 | WormBase (WB) | WB | available | WB-STRAIN:PC73, CGC_PC73 | 2026-09-05 04:52:23 | 0 |
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Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
