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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Project Production Systems Laboratory Resource Report Resource Website |
Project Production Systems Laboratory (RRID:SCR_024641) | P2SL | institution | Research institute dedicated to developing and deploying knowledge and tools for project management. Projects are temporary production systems. Dedicated to developing and deploying knowledge and tools for management of project production systems and the management of organizations that produce and deliver goods and services through such systems. | developing and deploying project management knowledge and tools, project production systems, |
is listed by: DataCite has parent organization: University of California; California; USA |
https://api.datacite.org/dois?prefix=10.34942 | SCR_024641 | UC Berkeley Project Production Systems Laboratory, The Project Production Systems Laboratory | 2026-07-25 12:10:39 | 0 | ||||||||
|
Ontario Ministry of Research and Innovation; Ontario; Canada Resource Report Resource Website 1+ mentions |
Ontario Ministry of Research and Innovation; Ontario; Canada (RRID:SCR_000989) | ORFAB | regional funding resource, funding resource | Ministry that supports research, commercialization and innovation taking place across Ontario through a range of programs and services like the Ontario Research Fund, Innovation Demonstration Fund and Ontario Venture Capital Fund. | is parent organization of: Ontario Centres of Excellence | nlx_157929 | https://www.ontario.ca/ministry-research-innovation | SCR_000989 | Ontario Ministry of Research and Innovation | 2026-07-25 12:10:41 | 2 | ||||||||
|
AutoDock Resource Report Resource Website 10000+ mentions |
AutoDock (RRID:SCR_012746) | autodock | software resource | Software suite of automated docking tools. Designed to predict how small molecules, such as substrates or drug candidates, bind to receptor of known 3D structure. AutoDock consist of AutoDock 4 and AutoDock Vina. AutoDock 4 consists of autodock to perform docking of ligand to set of grids describing target protein, and autogrid to pre calculate these grids. | Small molecules receptor binding, automated docking tools, 3D structure, AutoDock 4, AutoDock Vina, ligand, docking |
is listed by: bio.tools is listed by: Debian is listed by: SoftCite is related to: Autogrid |
PMID:19399780 | Free, Available for download, Freely available | OMICS_01594, biotools:autodock | https://bio.tools/autodock, https://sources.debian.org/src/autodock/ | SCR_012746 | 2026-07-25 12:07:39 | 11935 | ||||||
|
ExiMiR Resource Report Resource Website 1+ mentions |
ExiMiR (RRID:SCR_012753) | ExiMiR | software resource | R functions for the normalization of Exiqon miRNA array data. |
is listed by: OMICtools has parent organization: Bioconductor |
OMICS_00783 | SCR_012753 | 2026-07-25 12:07:35 | 1 | ||||||||||
|
CNV Workshop Resource Report Resource Website 1+ mentions |
CNV Workshop (RRID:SCR_012635) | CNV Workshop | software resource | Software for a web-enabled platform for analyzing genome variation such as copy number variation (CNV). |
is listed by: OMICtools has parent organization: SourceForge |
GNU Affero General Public License | OMICS_00715 | SCR_012635 | 2026-07-25 12:07:36 | 1 | |||||||||
|
motifRG Resource Report Resource Website 1+ mentions |
motifRG (RRID:SCR_012602) | motifRG | software resource | Software tools for discriminative motif discovery using regression methods. |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:24162561 | Free | OMICS_00487 | SCR_012602 | motifRG - A package for discriminative motif discovery designed for high throughput sequencing dataset | 2026-07-25 12:07:34 | 5 | |||||||
|
American Academy of Neurology Resource Report Resource Website 10+ mentions |
American Academy of Neurology (RRID:SCR_012739) | AAN | institution | An international professional association of 24,000 neurologists and neuroscience professionals dedicated to promoting the highest quality patient-centered neurologic care. They provide guidance and inspiration through education, information, policy development and advocacy for our members and their patients. The Academy''s professional website is only one of the domains associated with the AAN: * TheBrainMatters.org, public & patient education website * m.AAN.com, mobile AAN.com for members * Neurology journal * Neurology Now, patient magazine * Neurology Today, magazine for neurology professionals The AAN is committed to bringing its members the highest quality continuing medical education and professional education opportunities. The Academy''s Education programs cover the spectrum of neurological disorders, from the most prevalent to newly emerging issues. The AAN also provides a wide range of program formats, including in-depth print, convenient online, and hands-on workshop options. The AAN Annual Meeting brings together more than 10,000 neuroscience professionals for one of the world''s largest neurology gatherings. It has long been a leading showcase for the latest developments in scientific research, and the place to honor peers at the forefront of the work. The AAN offers a variety of publications, news, blogs, jobs, and practice guidelines. | clinical neurology, grant, human, neurological disorder, neurologist, neurology, neuroscience professional, patient, professional association, self-assessment examination, continuing medical education, journal |
is parent organization of: Neurology Podcast is parent organization of: American Academy of Neurology Research Fellowship Program |
Wikidata: Q4742898, nif-0000-00453, ISNI: 0000 0001 0280 2179, grid.417923.a, Crossref funder ID: 100005339 | https://ror.org/00mv9dj85 | SCR_012739 | 2026-07-25 12:07:37 | 13 | ||||||||
|
MiRaGE Resource Report Resource Website 10+ mentions |
MiRaGE (RRID:SCR_012738) | MiRaGE | software resource | Software package that contains functions for inference of target gene regulation by miRNA, based on only target gene expression profile. |
is listed by: OMICtools has parent organization: Bioconductor |
OMICS_00785 | SCR_012738 | 2026-07-25 12:07:35 | 29 | ||||||||||
|
Samuel Roberts Noble Foundation Resource Report Resource Website 1+ mentions |
Samuel Roberts Noble Foundation (RRID:SCR_012794) | Noble Foundation | institution | The Samuel Roberts Noble Foundation is an independent, nonprofit institute headquartered in Ardmore, Okla. Founded in 1945, the Noble Foundation conducts direct operations, including assisting farmers and ranchers, and conducting plant science research and agricultural programs, to enhance agricultural productivity regionally, nationally and internationally. Employing more than 360 persons, the Noble Foundation conducts its operations through the activities of three operating divisions: * Agricultural Division: Serving a 47-county area within a 100-mile radius of the Noble Foundation''s headquarters in Ardmore, Okla., the Agricultural Division assists more than 1,700 regional farmers and ranchers in achieving their individual financial, production, stewardship and quality-of life goals. * Plant Biology Division: The Plant Biology Division conducts basic biochemical, genetic and genomic plant research for the purpose of improving crop productivity and value, and enhancing animal and human health. * Forage Improvement Division: The Forage Improvement Division translates basic plant science research into tangible plant varieties. Within the institution, the Forage Improvement Division serves as a link between the discoveries in the laboratory and the field, where such discoveries are intended to enhance agricultural outcomes in Oklahoma and around the world. The coordinated efforts of these operating divisions enable the Noble Foundation agricultural specialists and scientists to move science and innovation from the laboratory to the field, giving life to discovery and improving agriculture in Oklahoma, in the United States and around the world. |
is parent organization of: MedicCyc is parent organization of: LegumeIP is parent organization of: PlantTFcat is parent organization of: psRNATarget |
ISNI: 0000 0004 0370 5663, nlx_151456, grid.419447.b, Crossref funder ID: 100000944 | https://ror.org/02zta5505 | SCR_012794 | Noble Foundation | 2026-07-25 12:07:36 | 5 | ||||||||
|
Chinese Academy of Sciences; Beijing; China Resource Report Resource Website 10+ mentions |
Chinese Academy of Sciences; Beijing; China (RRID:SCR_012797) | CAS | university | Public university for graduate education, under the direct leadership of the Chinese Academy of Sciences. |
is parent organization of: pFind Studio: pLink is parent organization of: Cascleave is parent organization of: rSNPBase is parent organization of: pNovo+ is parent organization of: pLabel is parent organization of: pBuild is parent organization of: Human Potential Tumor Associated Antigen database is parent organization of: pFind is parent organization of: Linked Neuron Data is parent organization of: QC-Chain is parent organization of: Network Ontology Analysis is parent organization of: GOEAST - Gene Ontology Enrichment Analysis Software Toolkit is parent organization of: Human Protein-Protein Interaction Mining Tool is parent organization of: Database of Domain Interactions and Bindings is parent organization of: Group Information Guided ICA is parent organization of: Groupwise Image Registration Toolbox is parent organization of: Local Label Learning Segmentation is parent organization of: Shanghai Institutes for Biological Sciences; Shanghai; China is parent organization of: GPU-Meta-Storms is parent organization of: EPGD is parent organization of: MethyCancer is parent organization of: inGAP is parent organization of: SysZNF - C2H2 Zinc Finger genes is parent organization of: NONCODE is parent organization of: Systematic Platform for Identifying Mutated Proteins (SysPIMP) is parent organization of: IVDB - Influenza Virus Database is parent organization of: Brainnetome fMRI toolkit is parent organization of: Brainnetome Atlas Viewer is parent organization of: Automatic Tractography-based Parcellation Pipeline |
grid.9227.e, Wikidata: Q530471, ISNI: 119573309, Crossref funder ID: 501100002367, nlx_47801 | https://ror.org/034t30j35 | SCR_012797 | Chinese Academy of Sciences | 2026-07-25 12:07:40 | 30 | ||||||||
|
U.S. Department of Defense Resource Report Resource Website 10+ mentions |
U.S. Department of Defense (RRID:SCR_012712) | DOD | institution | Executive branch department of the federal government charged with coordinating and supervising all agencies and functions of the government directly related to national security and the United States Armed Forces. | Government granting agency |
is parent organization of: Defense Advanced Research Projects Agency is parent organization of: Office of Naval Research is parent organization of: Defense and Veterans Brain Injury Center is parent organization of: Defense Centers of Excellence for Psychological Health and Traumatic Brain Injury is parent organization of: Congressionally Directed Medical Research Program is parent organization of: BHSAI; Maryland; USA |
ISNI: 0000 0004 0478 6223, grid.420391.d, nlx_143670, Crossref funder ID: 100000005, Wikidata: Q11209 | https://ror.org/0447fe631 | SCR_012712 | Department of Defense, United States Department of Defense, US Department of Defense | 2026-07-25 12:07:35 | 41 | |||||||
|
GNU.org Resource Report Resource Website 100+ mentions |
GNU.org (RRID:SCR_012764) | software resource | Unix-like operating system that is free software. GNU (more precisely, GNU/Linux systems) are entirely free software. The GNU Project was launched in 1984 to develop the GNU system. A Unix-like operating system is a software collection of applications, libraries, and developer tools, plus a program to allocate resources and talk to the hardware, known as a kernel. The Hurd, GNU''s own kernel, is some way from being ready for daily use. Thus, GNU is typically used today with a kernel called Linux. This combination is the GNU/Linux operating system. GNU/Linux is used by millions, though many call it Linux by mistake. | nlx_156924 | SCR_012764 | 2026-07-25 12:07:40 | 173 | ||||||||||||
|
CexoR Resource Report Resource Website |
CexoR (RRID:SCR_012769) | CexoR | software resource | Software for strand specific peak-pair calling in ChIP-exo replicates. |
is listed by: OMICtools has parent organization: Bioconductor |
MIT License | OMICS_00519 | SCR_012769 | CexoR: An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates | 2026-07-25 12:07:40 | 0 | ||||||||
|
MotifLab Resource Report Resource Website 1+ mentions |
MotifLab (RRID:SCR_012649) | MotifLab | software resource | Software for a general workbench for analyzing regulatory sequence regions and discovering transcription factor binding sites and cis-regulatory modules. |
is listed by: OMICtools has parent organization: Norwegian University of Science and Technology; Trondheim; Norway |
Research Council of Norway | PMID:23323883 | Acknowledgement requested, Free, Public | OMICS_00486 | SCR_012649 | 2026-07-25 12:07:38 | 2 | |||||||
|
DNaseR Resource Report Resource Website |
DNaseR (RRID:SCR_012819) | DNaseR | software resource | A R package that enables the identification of protein binding footprints in DNase I hypersensitive sites sequencing (DNase-seq) data. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Bioconductor |
PMID:23118738 | Free | biotools:dnaser, OMICS_00517 | https://bio.tools/dnaser | SCR_012819 | DNaseR: DNase I footprinting analysis of DNase-seq data | 2026-07-25 12:07:37 | 0 | |||||
|
Institute of Molecular and Cell Biology; Singapore; Singapore Resource Report Resource Website |
Institute of Molecular and Cell Biology; Singapore; Singapore (RRID:SCR_012775) | IMCB | institution | The Institute of Molecular and Cell Biology (IMCB) was established in 1987 at the National University of Singapore (NUS) before becoming an autonomous research institute (RI) of A*STAR. Its mission is to develop and foster a vibrant research culture for cutting-edge basic biomedical sciences and for training high-quality Ph.D. students for the flourishing biotechnology and pharmaceutical industries in Singapore. Funded primarily by the Biomedical Research Council (BMRC) of A*STAR, IMCB now boasts about 30 core research labs and 8 core facility units consisting of over 300 research scientists in total. IMCB''s research activities focus on six major fields: Cell Biology, Developmental Biology, Structural Biology, Infectious Diseases, Cancer Biology and Translational Research with core strengths in cell cycling, cell signalling, cell death, cell motility and protein trafficking. IMCB continues to strive for excellence in biomedical R&D to see the vision of Singapore being a world class hub for the Biomedical Sciences in Asia and beyond. IMCB''s achievements include being part of the international consortium that successfully sequenced the entire pufferfish (Fugu rubripes) in 2002. IMCB was awarded the Nikkei Prize 2000 for Technological Innovation in recognition of its growth into a leading international research centre and its collaboration with industry and research institutes worldwide. IMCB continues to publish in renowned international journals, with more than 1300 publications to its credit since 1987. |
has parent organization: Agency for Science Technology and Research is parent organization of: Fugu Genome Project is parent organization of: Elephant shark genome sequencing is parent organization of: Japanese Lamprey Genome Project |
grid.418812.6, Crossref funder ID: 501100007674, ISNI: 0000 0004 0620 9243, Wikidata: Q16999819, nlx_91982 | https://ror.org/04xpsrn94 | SCR_012775 | 2026-07-25 12:07:36 | 0 | |||||||||
|
tRanslatome Resource Report Resource Website 1+ mentions |
tRanslatome (RRID:SCR_012810) | tRanslatome | software resource | Detection of differentially expressed genes (DEGs) from the comparison of two biological conditions among different levels of gene expression, using several statistical methods: Rank Product, t-test, SAM, Limma, ANOTA, DESeq, edgeR. |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:24222209 | Free | OMICS_01316 | SCR_012810 | tRanslatome - Comparison between multiple levels of gene expression | 2026-07-25 12:07:41 | 2 | |||||||
|
Krona Resource Report Resource Website 50+ mentions |
Krona (RRID:SCR_012785) | Krona | software resource | Software that allows hierarchical data to be explored with zoomable pie charts. | bio.tools |
is listed by: bio.tools has parent organization: SourceForge |
PMID:21961884 | OMICS_01498, biotools:krona | https://bio.tools/krona | SCR_012785 | Krona - Hierarchical data browser | 2026-07-25 12:07:36 | 89 | ||||||
|
U.S. Social Security Administration Resource Report Resource Website 1+ mentions |
U.S. Social Security Administration (RRID:SCR_012905) | SSA | institution | Independent agency of the U.S. federal government that administers Social Security, a social insurance program consisting of retirement, disability, and survivor benefits. | Government granting agency | is parent organization of: New Beneficiary Data System | Crossref funder ID: 100005225, ISNI: 0000 0001 0726 0196, nlx_151831, grid.453277.0, Wikidata: Q2824618 | https://ror.org/04b7xxn32 | SCR_012905 | Social Security Administration, Social Security Administration (SSA) | 2026-07-25 12:07:39 | 6 | |||||||
|
Meharry Medical College Resource Report Resource Website |
Meharry Medical College (RRID:SCR_012863) | MMC | university | Founded in 1876, Meharry is a non-profit university in Tennessee. Meharry includes a medical school, dental school, and a graduate school. | undergraduate, graduate, master's, doctoral, phD, institution, university |
is related to: Clinical and Translational Science Awards Consortium is parent organization of: Meharry Endocrine core is parent organization of: Meharry Flow Cytometry and BSL3 Core is parent organization of: Meharry Human Tissue Acquistion and Pathology Core is parent organization of: Meharry Molecular Biology Core Facility is parent organization of: Meharry Morphology Core is parent organization of: Meharry Medical College School of Graduate Studies and Research; Tennessee; USA is parent organization of: Meharry Proteomics Core is parent organization of: Meharry Microarray and Bioinformatics Core is parent organization of: Meharry Medical College Molecular Biology Core Facility is parent organization of: Meharry Medical College Labs and Facilities |
ISNI:0000 0001 0286 752X, nlx_66976, grid.259870.1, Wikidata:Q4026847 | https://ror.org/00k63dq23 | SCR_012863 | Meharry Medical, Meharry, Meharry Medical College | 2026-07-25 12:07:38 | 0 |
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Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
