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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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trinetx Resource Report Resource Website 100+ mentions |
trinetx (RRID:SCR_022760) | database, data or information resource | Network of healthcare organizations, together with data partners in Brazil, South Korea, and Japan, to bring clinical facts on more than 250 million patients around the world. Federated model so users of this data are ensured new patients, observations, and results every day, all harmonized to standard terminology like ICD-10 and LOINC without any data wrangling required at the point of care. The raw data is not available to authors of papers and papers in medicine are being retracted. | Data, medical data, clinical facts, patients around the world, raw data is not available to authors, papers in medicine are being retracted | Restricted | SCR_022760 | 2026-07-25 12:12:17 | 139 | |||||||||||
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OncoboxPD Resource Report Resource Website 1+ mentions |
OncoboxPD (RRID:SCR_023723) | database, data or information resource | Structured curated collection of protein based and of metabolic human molecular pathways. Human molecular pathways database with tools for activity calculating and visualization.All pathways are functionally classified according to GO terms enrichment patterns. All pathway participants, their interactions and reactions are uniformly processed and annotated, and are ready for numeric analysis of experimental expression data.For every comparison graph is generated summarizing top up and down regulated pathways. | Gene Ontology terms enrichment patterns, human molecular pathways, curated collection, GO terms enrichment patterns, experimental expression data analysis, |
is related to: oncoboxlib is related to: Gene Ontology |
Russian Science Foundation ; National Natural Science Foundation of China ; Qingdao Key Research Project ; Qingdao Key Health Discipline Development Fund |
PMID:35615022 | Free, Freely available | SCR_023723 | Oncobox Pathway Databank | 2026-07-25 12:12:17 | 3 | |||||||
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VDJbase Resource Report Resource Website 1+ mentions |
VDJbase (RRID:SCR_022599) | database, data or information resource | Open source adaptive immune receptor genotype and haplotype database. Core collection is inferred from immune receptor repertoire sequences and genomically derived material. Provides customisable reports, which allow users to study gene and allele usage in various ways. | Adaptive immune receptor genes, genotypes and haplotypes, immune receptor repertoire sequences, customisable reports, gene and allele | European Union ; NIAID R01AI127877; NIAID R01AI125567; NIAID R01AI130398 |
DOI:10.1093/nar/gkz872 | Free, Freely available | SCR_022599 | 2026-07-25 12:12:17 | 6 | |||||||||
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BnTIR Resource Report Resource Website 1+ mentions |
BnTIR (RRID:SCR_023021) | database, data or information resource | Searchable database of Brassiceae genomic data hosted on the website. | Brassica napus, transcriptome information, Brassiceae genomic data | National Key Research and Development Plan of China | Free, Freely available | SCR_023021 | Brassica napus Transcriptome Information Resource | 2026-07-25 12:12:17 | 5 | |||||||||
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Kinase Associated Neural Phospho Signaling Resource Report Resource Website |
Kinase Associated Neural Phospho Signaling (RRID:SCR_023659) | KANPHOS | database, data or information resource | Database system that provides phosphorylated sites and information about which substrates are phosphorylated by specific kinase and which extracellular stimuli activate or inhibit protein phosphorylation via intracellular signaling cascades. | Fujita Health University, Toyoake, Japan, phosphorylated sites, substrates, phosphorylation, kinase, protein phosphorylation, intracellular signaling cascades, |
works with: Allen Brain Atlas works with: HuGE Navigator - Human Genome Epidemiology Navigator works with: UniProtKB |
Free, Freely available | SCR_023659 | 2026-07-25 12:12:16 | 0 | |||||||||
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Brassicaceae Database Resource Report Resource Website 100+ mentions |
Brassicaceae Database (RRID:SCR_023019) | BRAD | database, data or information resource | Database includes newly released genome sequences of Brassiceae species and published genomic data of most other Brassicaceae species.Data can be browsed in JBrowse or searched in BLAST. Offers service of searching for syntenic genes, which are generated based on their syntenic relationships to genes in Arabidopsis thaliana. Regularly updated with newly released reference genomes. | genome sequences, Brassiceae species, published genomic data, syntenic genes, | National Programon Key Research Project ; National Natural Science Foundation of China |
DOI:10.1093/nar/gkab1057 | Free, Freely available | SCR_023019 | 2026-07-25 12:12:15 | 291 | ||||||||
|
ATCC STR database Resource Report Resource Website 1+ mentions |
ATCC STR database (RRID:SCR_019203) | database, data or information resource | Comprehensive database of Short Tandem Repeat DNA profiles for all of ATCC human cell lines. ATCC data collection as part of continuing efforts to characterize and authenticate cell lines in Cell Biology collection. | Short tandem repeat, DNA profile, ATCC human cell line, ATCC data collection | is related to: ATCC | Restricted | SCR_019203 | STR database, Short Tandem Repeat database | 2026-07-25 12:12:13 | 4 | |||||||||
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PanglaoDB Resource Report Resource Website 50+ mentions |
PanglaoDB (RRID:SCR_022580) | database, data or information resource | Database for exploration of single cell RNA sequencing experiments from mouse and human. Collects and integrate data from multiple studies and present them through unified framework. | single cell RNA sequencing experiments, mouse data, human data, single cell RNA sequencing | Karolinska Institutet/AstraZeneca Integrated Cardio Metabolic Centre ; Fondation Leducq—Transantlantic PlaqOmics Network ; Hjärt-och Lungfonden ; Vetenskapsrådet |
PMID:30951143 | Free, Freely available | SCR_022580 | 2026-07-25 12:12:15 | 91 | |||||||||
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LifeLegacy Foundation Resource Report Resource Website 1+ mentions |
LifeLegacy Foundation (RRID:SCR_000518) | biomaterial supply resource, material resource | A non-profit tissue bank that facilitates the distribution of non-transplantable tissue to the medical and research community. It provides snap frozen low post mortem interval (PMI) tissue, normal and diseased tissue, plastinated specimens, anatomical specimens, and specialty specimens. The foundation also works to increase public awareness of research tissue donation for medical research. | tissue, bank, medicine, research, body, transplant, biomaterial | is listed by: One Mind Biospecimen Bank Listing | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_37185 | SCR_000518 | LifeLegacy | 2026-07-25 12:12:19 | 1 | ||||||||
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CLC Main Workbench Resource Report Resource Website 10+ mentions |
CLC Main Workbench (RRID:SCR_000354) | CLC Main Workbench | software resource, software toolkit | A suite of software for DNA, RNA and protein sequence data analysis. The software allows for the analysis and visualization of Sanger sequencing data as well as gene expression analysis, molecular cloning, primer design, phylogenetic analyses, and sequence data management. | sequencing, analysis, cloning, data, management, molecular, gene, genome, dna, rna |
is listed by: OMICtools is listed by: SoftCite |
Restricted | OMICS_01813 | SCR_000354 | 2026-07-25 12:12:19 | 31 | ||||||||
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Acquisition and Analysis for Electron Tomography Resource Report Resource Website |
Acquisition and Analysis for Electron Tomography (RRID:SCR_000192) | TOM Toolbox | software resource, software toolkit | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. A software platform for low dose electron tomography (ET) for all processing steps: acquisition, alignment, reconstruction, and analysis. Requires: Matlab R2008a and Image Processing Toolbox (V6.1) | electron microscope, electron tomography, acquisition, alignment, analysis, processing, reconstruction, software, alignment, reconstruction, processing | has parent organization: Max Planck Institute of Biochemistry; Martinsried; Germany | PMID:15721576 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10145 | http://www.biochem.mpg.de/en/rd/baumeister/tom_e/ | SCR_000192 | TOM software toolbox | 2026-07-25 12:12:17 | 0 | |||||
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University of Michigan Human Breast Cancer Cell Lines Resource Report Resource Website 1+ mentions |
University of Michigan Human Breast Cancer Cell Lines (RRID:SCR_000542) | University of Michigan Human Breast Cancer Cell Lines | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 1, 2023. Asterand, Inc., the Detroit-based supplier of human tissue products and services, announces the distribution of eleven breast cancer cell lines, derived at the University of Michigan. The University has agreed to license the marketing of the breast cancer cell lines, known as the SUM lines, through Asterand in an effort to provide an exceptional tool to a broad base of researchers studying the disease. There are an estimated 1.2 million new diagnoses worldwide of breast cancer each year. The cell lines can be used to study all aspects of breast cancer biology, from new drug target identification to cell signaling to effects of novel drugs on cellular proliferation. | cell line, breast cancer |
is related to: Asterand has parent organization: University of Michigan Medical School; Michigan; USA |
Breast cancer | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_84393 | SCR_000542 | University of Michigan SUM-LINES, University of Michigan Human Breast Cancer Cell Lines (SUM-LINES) | 2026-07-25 12:12:18 | 3 | ||||||
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Mexican Health and Aging Study Resource Report Resource Website 1+ mentions |
Mexican Health and Aging Study (RRID:SCR_000818) | MHAS | biomaterial supply resource, material resource | A dataset of a prospective panel study of health and aging in Mexico. The study was designed to ensure comparability with the U.S. Health and Retirement Study in many domains, and the NHANES III. The baseline survey in 2001 is nationally representative of the 13 million Mexicans born prior to 1951. The six Mexican states which are home to 40% of all migrants to the U.S. were over-sampled at a rate of 1.7:1. Spouse/partners of eligible respondents were interviewed also, even if the spouse was born after 1950. Completed interviews were obtained in 9,862 households, for a total of 15,186 individual interviews. All interviews were face-to-face, with average duration of 82 minutes. A direct interview (on the Basic questionnaire) was sought, and Proxy interviews were obtained when poor health or temporary absence precluded a direct interview. Questionnaire topics included the following: * HEALTH MEASURES: self-reports of conditions, symptoms, functional status, hygienic behaviors (e.g., smoking & drinking history), use/source/costs of health care services, depression, pain, reading and cognitive performance; * BACKGROUND: Childhood health and living conditions, education, ability to read/write and count, migration history, marital history; * FAMILY: rosters of all children (including deceased children); for each, demographic attributes, summary indicators of childhood and current health, education, current work status, migration. Parent and sibling migration experiences; * TRANSFERS: financial and time help given to and received by respondent from children, indexed to specific child; time and financial help to parent; * ECONOMIC: sources and amounts of income, including wages, pensions, and government subsidies; type and value of assets. All amount variables are bracketed in case of non-response. * HOUSING ENVIRONMENT: type, location, building materials, other indicators of quality, and ownership of consumer durables; * ANTHROPOMETRIC: for a 20% sub-sample, measured weight, height; waist, hip, and calf circumference; knee height, and timed one-leg stands. Current plans are to conduct another two follow-up surveys in 2012 and 2014 and will field the 3rd and 4th waves of survey data collection in Mexico. For the 2012 wave, interviews will be sought for: every person who was part of the panel in 2003 and their new spouse / partner, if applicable, and a new sample of persons born between 1952 and 1962. For the 2014 wave, we will follow-up the whole sample from 2012. Interviews will be conducted person-to-person. Direct interviews will be sought with all informants, but proxy interviews are allowed for those unable to complete their own interview for health or cognitive reasons. A next-of-kin interview will be completed with a knowledgeable respondent for those who were part of the panel but have died since the last interview. A sub-sample will be selected to obtain objective markers such as blood sample and anthropometric measures. Data Availability: The 2001 baseline data, 2003 follow-up data, and documentation can be downloaded. * Dates of Study: 2001-2003 * Study Features: Longitudinal, International, Anthropometric Measures * Sample Size: 2001: 15,186 (Baseline) Link: * ICPSR: http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/00142 | health, mexican, adult human, mexico, longitudinal, international, anthropometric measure, middle adult human, late adult human, interview, survey, spouse, health behavior, health status, childhood, family background, migration, income, housing environment, family life, behavior, housing, living arrangement, mental health, quality of life, questionnaire, disease, disability, economic, family, urban, rural, blood, self-report, chronic condition, symptom report, functionality, cognition, socioeconomic, work history, health insurance, health expenditure, parent, child, household resident, asset, pension, smoking, alcohol use, depressive disorder, pain, reading, education, demographics, employment |
is listed by: One Mind Biospecimen Bank Listing is listed by: Inter-university Consortium for Political and Social Research (ICPSR) has parent organization: University of Texas Medical Branch at Galveston |
Aging | NIA R01AG018016 | Public, Registration is required, Acknowledgement requested | nlx_151859 | http://www.mhas.pop.upenn.edu/english/home.htm | SCR_000818 | Mexican Health & Aging Study, Mexican Health and Aging Study (MHAS) | 2026-07-25 12:12:19 | 3 | ||||
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Polish Academy of Sciences Warsaw; Warsaw; Poland Resource Report Resource Website 1+ mentions |
Polish Academy of Sciences Warsaw; Warsaw; Poland (RRID:SCR_000250) | PAS, PAN | institution | Polish state sponsored institution of higher learning. Headquartered in Warsaw, it is responsible for spearheading development of science across country by society of distinguished scholars and network of research institutes. Polish research institution comprised of smaller institutes with goal to support development of science and establishing standards of research quality and ethics. | institution, research, support, science |
is parent organization of: 5S Ribosomal RNA Database is parent organization of: DNAtraffic is parent organization of: Nencki Institute of Experimental Biology; Warsaw; Poland |
nlx_22116 | http://institution.pan.pl | SCR_000250 | Polska Akademia Nauk, Warsaw Scientific Society, Warsaw Society of Friends of Learning, Polish Academy of Science | 2026-07-25 12:12:17 | 1 | |||||||
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Genetics of Kidneys in Diabetes Resource Report Resource Website |
Genetics of Kidneys in Diabetes (RRID:SCR_000133) | GoKinD, Go KinD | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Collect, store, and distribute genetic samples from cases and controls of type 1 diabetes and diabetic nephropathy for investigator-driven research into the genetic basis of diabetic nephropathy. As the risk of kidney complications in type 1 diabetes appears to have a considerable genetic component, this study assembled a large data resource for researchers attempting to identify causative genetic variants. The types of data collected allowed traditional case-control testing, a rapid and often powerful approach, and family-based analysis, a robust approach that is not influenced by population substructure. | clinical, genetics, genetic variant, gene, data set |
is listed by: One Mind Biospecimen Bank Listing is listed by: NIDDK Information Network (dkNET) has parent organization: George Washington University; Washington D.C.; USA |
Type 1 diabetes, Diabetes, Diabetic nephropathy, Kidney disease | JDRF ; NIH |
PMID:16775037 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152764 | http://www.gokind.org/access | SCR_000133 | Genetics of Kidneys in Diabetes (GoKinD) Study, Genetics of Kidneys in Diabetes Study | 2026-07-25 12:12:18 | 0 | |||
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metaMA Resource Report Resource Website |
metaMA (RRID:SCR_000408) | software resource, software toolkit | Software R package for meta-analysis for microarrays. It combines either p-values or modified effect sizes from different studies to find differentially expressed genes. | standalone software, mac os x, unix/linux, windows, r |
is listed by: OMICtools is listed by: CRAN is related to: SMAGEXP |
Scottish Government Rural and Environment Research and Analysis Directorate | PMID:19628502 | Free, Available for download, Freely available | OMICS_03524 | SCR_000408 | Meta-analysis for MicroArrays, Meta analysis for MicroArrays | 2026-07-25 12:12:19 | 0 | ||||||
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Symptom Score for Benign Prostatic Hyperplasia Resource Report Resource Website |
Symptom Score for Benign Prostatic Hyperplasia (RRID:SCR_000127) | AUA BPH, AUABPH | assessment test provider, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016. Adapted from the American Urology Association Symptom Score for Benign Prostatic Hyperplasia, this chart will assist physicians, researchers, and patients in assessing the severity of the problem. | severity, symptom, prostate |
is listed by: NIDDK Information Network (dkNET) has parent organization: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
Benign Prostatic Hyperplasia | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152737 | https://www.niddk.nih.gov/health-information/health-topics/urologic-disease/benign-prostatic-hyperplasia-bph/pages/facts.aspx | SCR_000127 | American Urological Association's Symptom Score for Benign Prostatic Hyperplasia, AUA Symptom Score for BPH | 2026-07-25 12:12:19 | 0 | |||||
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Taburit Umbilical Cord Blood Bank Resource Report Resource Website |
Taburit Umbilical Cord Blood Bank (RRID:SCR_000920) | biomaterial supply resource, material resource | A blood bank that operates as the marketing arm for the family cord blood banking operations of Sheba Medical Center. It is the largest medical center in the Middle East with a 24/7 call center to answer questions. The center provides collection kits, supervises the collection process, and transports the collected blood to the Sheba Cord Blood Bank. | blood, bank, middle east, collection, transport, family, sheba medical center | nlx_38777 | http://www.taburit.co.il/ | SCR_000920 | Tamburit | 2026-07-25 12:12:21 | 0 | |||||||||
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Creative Diagnostics Resource Report Resource Website |
Creative Diagnostics (RRID:SCR_000367) | biomaterial supply resource, material resource | An antibody supplier that also provides diagnostic components, assay reagents and contract biologic RandD and manufacturing services. The company focuses on providing services to help clients develop, manufacture and commercialize their products. | antibody, supplier, reagent, assay, research, development, manufacture, market, commercial |
is parent organization of: ELISA Kits Resources is parent organization of: Primary Antibodies |
Public | nlx_158541 | SCR_000367 | 2026-07-25 12:12:19 | 0 | |||||||||
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K Bar Livestock Resource Report Resource Website |
K Bar Livestock (RRID:SCR_000924) | biomaterial supply resource, material resource | A business that supplies livestock organisms and equipment to biomedical researchers and teachers. Examples of services include livestock such as sheep, goats, swine, and calves; materials such as blood, isolated tissue, feed, hay, equipment; and timed pregnancies and pre-delivery laboratory tests. | domestic, livestock, sheep, goat, calf, swine, pig, timed pregnancy, blood, isolated tissue, feed, hay equipment | Available to the research community, Available to the teaching community | nlx_52158 | SCR_000924 | K Bar Livestock LLC, K-Bar Livestock | 2026-07-25 12:12:21 | 0 |
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Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
