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http://www.bioconductor.org/packages/2.14/bioc/html/GLAD.html

Software for analysis of array CGH data: detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified.

Proper citation: GLAD (RRID:SCR_001284) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/bycom/

A software which can perform methylcytosine calling from BS-seq (WGBS and RRBS), and permits either unmapped reads (FASTQ) or mapped reads (SAM/BAM) to be used as the input data. Certain SNPs (C>A/G) can also be selected in the output.

Proper citation: Bycom (RRID:SCR_000659) Copy   

•   Source: SciCrunch Registry

https://github.com/plaisier-lab/OncoMerge

Software tool to integrate somatic mutation types into comprehensive integrated somatic mutation matrix for downstream analyses.Somatic mutation integration platform that tames allelic heterogeneity, discovers causal mutations, integrates binary PAM and fusion with quantitative CNA data types, and overcomes known obstacles in cancer genetics. Used for systematic integration of protein affecting mutations, gene fusions, and copy number alterations into comprehensive somatic mutational profile.

Proper citation: OncoMerge (RRID:SCR_023079) Copy   

•   Source: SciCrunch Registry

http://prime.psc.riken.jp/compms/msdial/main.html

Software tool for data independent MS/MS deconvolution for comprehensive metabolome analysis. Universal program for untargeted metabolomics that supports multiple instruments (GC/MS, GC/MS/MS, LC/MS, and LC/MS/MS) and MS vendors (Agilent, Bruker, LECO, Sciex, Shimadzu, Thermo, and Waters). Used for untargeted metabolomics and lipidomics supporting any type of chromatography/mass spectrometry methods.

Proper citation: MS-DIAL (RRID:SCR_023076) Copy   

•   Source: SciCrunch Registry

https://amstar.ca/

Guide tool to assess methodological quality of systematic reviews. Used to evaluate systematic reviews of randomised trials. AMSTAR 2 enables more detailed assessment of systematic reviews that include randomised or non-randomised studies of healthcare interventions, or both.

Proper citation: AMSTAR (RRID:SCR_023194) Copy   

•   Source: SciCrunch Registry

https://www.standardbio.com/products-services/instruments/hyperion

Imaging system enables comprehensive analysis of cellular phenotypes. Allows access to single cell insights. This includes deeper understanding of intricate spatial relationships of cells, pathways and phenotypes in tissue microenvironment.

Proper citation: Fluidigm: Hyperion Imaging System (RRID:SCR_023195) Copy   

•   Source: SciCrunch Registry

https://www.licor.com/bio/support/answer-portal/imaging-systems/odyssey-fc.html

System used to image and analyze Western blots. Odyssey Fc imager has been discontinued.

Proper citation: LI-COR: Odyssey Fc Imaging System (RRID:SCR_023227) Copy   

•   Source: SciCrunch Registry

https://andor.oxinst.com/products/ixon-emccd-cameras-for-life-science

Scientific camera with EMCCD image sensor that is capable of detecting single photon events without image intensifier, achievable by way of unique electron multiplying structure built into the chip.

Proper citation: Andor: iXon Ultra EMCCD camera (RRID:SCR_023166) Copy   

•   Source: SciCrunch Registry

https://andor.oxinst.com/downloads/uploads/Andor_Luca-S_Manual.pdf

Luca-S camera of single photon sensitive imaging Andor family scientific cameras with Electron Multiplying Charge Coupled Device detector, designed for most challenging low-light imaging applications.

Proper citation: Andor: Luca S EMCCD camera (RRID:SCR_023165) Copy   

•   Source: SciCrunch Registry

https://www.heka.com/downloads/hardware/manual/m_itc18.pdf

Second generation low noise 16 bit computer interface from Instrutech Corporation. 16-bit Multi-Channel Data Acquisition Interface with PCI or USB host adapter.

Proper citation: Heka Elektronik: InstruTECH ITC-18 (RRID:SCR_023164) Copy   

•   Source: SciCrunch Registry

http://www.humanmotorthalamus.com/

A research tool for clinical and experimental neuroscience, which provides images of human thalamus in the stereotactic planes of the coordinate system based on intercommissural line. Images include histological sagittal sections, sagittal maps, coronal maps, horizontal maps, and MRI images all from the same brain. The website also provides materials and methods section, references to the articles and presentations describing research data (on which the maps are based), and a bibliography on the synaptic relationships of subcortical and cortical afferents with projection and local circuit neurons in the motor thalamus.

Proper citation: Human Thalamus in 3D Stereotactic Coordinates (RRID:SCR_014214) Copy   

•   Source: SciCrunch Registry

https://github.com/eirikhoye/airr_tools

Github repository for the paper "T cell receptor repertoire sequencing reveals chemotherapy-driven clonal expansion in colorectal liver metastases" by Høye et al.

Proper citation: airr_tools (RRID:SCR_023297) Copy   

•   Source: SciCrunch Registry

https://www.sartorius.com/en/products/protein-analysis/octet-bli-detection/octet-systems-software

Octet BLI systems enable real-time, label-free analysis for determination of kinetics, affinity and antibody/protein quantitation. Includes Octet Analysis Studio for analysis of assays measuring kinetics and affinity values for drug-target binding and high-throughput kinetic screening for lead identification. Typical applications include kinetic analysis of protein-protein, protein-small molecules, antibody-antigen, antibody-VLP, antibody-Fc gamma receptors, including antibody-neonatal receptor (FcRn) interactions. Additional applications supported include lot release and stability analysis of drug molecules based on binding kinetics and affinity.

Proper citation: Thermo Fisher: Sartorius: Octet BLI systems (RRID:SCR_023267) Copy   

•   Source: SciCrunch Registry

https://www.eppendorf.com/gb-en/eShop-Products/PCR/Thermocyclers/Mastercycler-nexus-p-PF-14698

Thermal cycler conduct PCR runs with range of standard vessel types, from 0.2 mL tubes to 96 well plates using single 96-well aluminum block. Can accommodate 96-well PCR plates, 0.2 mL PCR tubes, 0.2 mL PCR tube strips, and 0.5 mL PCR tubes.Mastercycler nexus cycler can email you when PCR run is complete.

Proper citation: Eppendorf: Mastercycler nexus PCR Thermal Cycler (RRID:SCR_023266) Copy   

•   Source: SciCrunch Registry

https://bioscience.lonza.com/lonza_bs/JP/en/Transfection/p/000000000000276883/4D-Nucleofector-X-Unit

One of four functional modules of 4D-Nucleofector System. It supports Nucleofection of various cell numbers cells in different formats.

Proper citation: Lonza: 4D Nucleofector X Unit (RRID:SCR_023155) Copy   

•   Source: SciCrunch Registry

https://www.thermofisher.com/order/catalog/product/50143210?SID=srch-srp-50143210

Storage used for high capacity random access storage (210 SBS microplates) at ambient conditions. The Cytomat 10 Hotel (PH) offers multiple transfer positions, dual access point (DAP) and as combined benchtop-under bench solution, it allows flexible placement within the laboratory.

Proper citation: Thermo Fisher: Cytomat 10 Hotel Ambient Storage (RRID:SCR_023273) Copy   

•   Source: SciCrunch Registry

https://www.medicalexpo.com/ja/prod/erma/product-68401-922563.html

Automatic cell counting instrument. Used to count blood cells.

Proper citation: ERMA: Automatic blood cell counter PCE-210N (RRID:SCR_023148) Copy   

•   Source: SciCrunch Registry

https://www.adobe.com/acrobat/pricing.html?mv=search&mv=search&sdid=QLD1PCTN&ef_id=25c445b483b7165088e721ba69a40b8e%3AG%3As&s_kwcid=AL%213085%2110%2179371125970841%2121216644722

Productivity and collaboration PDF solution, combining Acrobat desktop software, mobile scan app, signature app and Acrobat Reader mobile app enhanced with premium mobile features and premium Document Cloud services.

Proper citation: Adobe Acrobat Pro (RRID:SCR_023361) Copy   

•   Source: SciCrunch Registry

https://www.eppendorf.com/dk-en/eShop-Products/Liquid-Handling/Manual-Pipetting-Dispensing/Eppendorf-Research-plus-p-3123000063

Eppendorf manual, autoclavable, air-cushion pipette for accurate ergonomic pipetting of aqueous solutions.

Proper citation: Eppendorf: Research plus 100-1000 uL 1 channel pipette (RRID:SCR_023466) Copy   

•   Source: SciCrunch Registry

https://www.eppendorf.com/ie-en/eShop-Products/Liquid-Handling/Manual-Pipetting-Dispensing/Eppendorf-Research-plus-p-3123000039

Mechanical and autoclavable, manual, air cushion pipette for accurate, ergonomic pipetting of aqueous solutions.

Proper citation: Eppendorf: Research plus 2 ��� 20 ��L yellow 1 channel pipette (RRID:SCR_023465) Copy   

•   Source: SciCrunch Registry